Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.0e-136 489.2 264 100.0
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.5e-115 419.9 264 84.1
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.5e-115 419.9 264 84.5
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 3.3e-115 418.7 264 84.5
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.3e-114 416.8 264 83.3
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.3e-114 416.8 264 83.7
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 3.7e-114 415.2 264 82.6
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 4.8e-114 414.8 264 83.3
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.1e-113 413.7 264 83.3
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.1e-113 413.7 264 83.3
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.4e-113 413.3 264 83.7
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 1.4e-113 413.3 264 83.7
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.8e-113 412.9 264 83.3
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 2.4e-113 412.5 264 82.6
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.4e-113 412.5 264 83.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.1e-113 412.1 264 83.0
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 3.1e-113 412.1 264 83.0
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 4.1e-113 411.8 264 83.0
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 4.1e-113 411.8 264 83.0
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 4.1e-113 411.8 264 81.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 5.3e-113 411.4 264 83.0
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 6.9e-113 411.0 264 83.0
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 6.9e-113 411.0 264 81.8
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.5e-112 409.8 264 81.4
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.5e-112 409.8 264 81.8
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.5e-112 409.8 264 82.6
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.5e-112 409.8 264 82.6
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.5e-112 409.8 264 82.6
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.5e-112 409.8 264 82.2
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.6e-112 409.1 264 83.0
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 2.6e-112 409.1 264 83.3
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.6e-112 409.1 264 82.2
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 2.6e-112 409.1 264 82.2
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.6e-112 409.1 264 82.6
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.6e-112 409.1 264 81.1
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 3.4e-112 408.7 264 81.1
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 4.5e-112 408.3 264 82.6
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 5.9e-112 407.9 264 81.8
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 5.9e-112 407.9 264 81.8
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.9e-112 407.9 264 81.1
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.7e-112 407.5 264 81.1
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.7e-112 407.5 264 81.1
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.0e-111 407.1 264 81.4
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.0e-111 407.1 264 80.3
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.3e-111 406.8 264 80.7
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.3e-111 406.8 270 81.9
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.3e-111 406.8 264 79.9
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 2.2e-111 406.0 264 82.6
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.2e-111 406.0 264 80.7
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 2.2e-111 406.0 264 81.4
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 2.9e-111 405.6 265 83.8
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 5.0e-111 404.8 264 82.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.5e-111 404.4 264 81.8
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 6.5e-111 404.4 264 81.4
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 8.5e-111 404.1 264 80.3
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.1e-110 403.7 263 80.6
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.1e-110 403.7 264 81.8
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.1e-110 403.7 264 80.7
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.4e-110 403.3 264 79.9
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.4e-110 403.3 264 80.3
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.4e-110 403.3 264 81.4
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.9e-110 402.9 264 81.1
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.9e-110 402.9 264 79.5
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 2.5e-110 402.5 264 80.7
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.2e-110 402.1 264 81.1
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 3.2e-110 402.1 270 80.4
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 9.4e-110 400.6 264 80.3
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 9.4e-110 400.6 264 81.4
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.2e-109 400.2 264 81.1
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.6e-109 399.8 264 79.9
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 2.7e-109 399.1 264 79.9
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 4.7e-109 398.3 264 80.7
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.1e-109 397.9 264 79.9
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 6.1e-109 397.9 264 79.2
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 6.1e-109 397.9 265 80.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 7.9e-109 397.5 264 79.9
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 7.9e-109 397.5 264 80.7
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 7.9e-109 397.5 264 80.7
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 7.9e-109 397.5 264 79.2
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.4e-108 396.7 264 80.7
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.4e-108 396.7 249 82.3
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 3.0e-108 395.6 264 79.2
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.0e-108 395.6 264 80.3
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 3.9e-108 395.2 264 76.9
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 5.1e-108 394.8 264 79.5
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.7e-108 394.4 264 78.4
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 6.7e-108 394.4 264 78.4
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 8.8e-108 394.0 264 78.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 2.6e-107 392.5 264 78.8
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 4.4e-107 391.7 264 79.2
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 4.4e-107 391.7 261 80.1
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 8.2e-106 387.5 264 77.7
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.1e-105 387.1 257 79.4
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.1e-105 387.1 264 77.7
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.4e-105 386.0 264 77.3
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 2.4e-105 386.0 264 81.4
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 3.1e-105 385.6 264 81.4
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.1e-105 385.2 234 85.9
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 5.9e-104 381.3 249 81.9
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 7.7e-104 380.9 264 78.0
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.3e-103 380.2 249 81.5
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.7e-103 379.8 264 78.0
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.2e-103 379.4 247 83.4
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.2e-103 379.4 264 76.5
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-102 377.1 264 76.9
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.9e-102 376.3 264 76.5
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.9e-102 376.3 264 76.9
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.9e-102 376.3 264 76.9
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.9e-102 376.3 264 76.9
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.9e-102 376.3 264 76.9
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.9e-102 376.3 264 76.5
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.9e-102 376.3 265 79.6
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 3.2e-102 375.6 264 76.1
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 4.2e-102 375.2 264 76.5
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 4.2e-102 375.2 264 76.5
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 4.2e-102 375.2 264 76.5
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 4.2e-102 375.2 264 76.5
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 4.2e-102 375.2 264 76.1
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 4.2e-102 375.2 264 80.3
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 5.5e-102 374.8 264 76.1
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 5.5e-102 374.8 264 76.5
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 5.5e-102 374.8 264 76.5
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 1.2e-101 373.6 264 76.1
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.6e-101 373.2 264 79.5
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 2.1e-101 372.9 264 75.8
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 2.1e-101 372.9 264 75.8
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 8.0e-101 370.9 241 80.9
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-100 370.5 265 76.2
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-100 370.5 265 76.2
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.0e-100 370.5 265 76.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.4e-97 360.1 264 76.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 2.7e-96 355.9 249 77.5
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.5e-94 349.4 265 73.2
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.8e-92 343.2 264 71.6
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.0e-92 342.4 264 71.2
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 5.2e-92 341.7 243 78.6
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 2.0e-91 339.7 219 81.7
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 2.0e-91 339.7 211 83.9
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 2.2e-90 336.3 227 75.8
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 9.1e-89 330.9 264 65.5
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 5.9e-88 328.2 220 76.8
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 6.5e-87 324.7 264 65.5
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 8.5e-87 324.3 267 66.3
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.2e-85 320.5 216 80.6
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.0e-83 313.2 264 67.8
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.6e-83 312.8 219 72.6
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 2.5e-78 296.2 219 69.4
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 6.8e-76 288.1 230 62.6
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 4.6e-72 275.4 249 63.5
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.6e-72 275.4 251 64.9
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 3.0e-71 272.7 251 62.2
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.1e-70 270.8 205 73.2
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 7.3e-70 268.1 265 60.4
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 7.3e-70 268.1 209 65.6
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.8e-69 266.2 270 57.4
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.1e-65 252.3 264 58.7
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 5.4e-65 251.9 209 62.7
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.5e-54 216.5 245 51.4
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.6e-53 213.8 236 57.6
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.0e-52 209.1 245 49.4
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.9e-50 202.2 132 78.8
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 8.4e-50 201.4 138 80.4
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.3e-47 194.1 122 82.0
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.7e-42 177.2 118 79.7
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.1e-38 164.5 181 53.6
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.5e-30 137.5 129 62.0
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.5e-30 137.5 194 45.9
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.6e-29 132.9 96 70.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 7.9e-24 115.2 69 85.5


User provided reference genes

Program Settings