Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016288 Vanilla planifolia HOM05D003846 ORTHO05D004726 6.3e-85 317.4 158 100.0
HPP92_016307 Vanilla planifolia HOM05D003846 ORTHO05D004726 2.6e-83 312.0 158 98.1
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 8.8e-63 243.8 159 77.4
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 2.6e-62 242.3 159 76.7
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 3.3e-62 241.9 158 78.5
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 9.7e-62 240.4 159 75.5
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 2.2e-61 239.2 160 78.1
TAR622G0464 Trochodendron aralioides HOM05D003846 ORTHO05D004726 4.8e-61 238.0 159 75.5
Atru.chr11.1333 Acer truncatum HOM05D003846 ORTHO05D004726 6.3e-61 237.7 158 76.6
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 2.4e-60 235.7 158 75.9
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 1.6e-59 233.0 159 75.5
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 1.6e-59 233.0 161 73.3
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 2.0e-59 232.6 159 73.0
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 4.5e-59 231.5 160 75.6
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 5.9e-59 231.1 158 73.4
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 5.9e-59 231.1 158 75.3
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 7.7e-59 230.7 159 73.0
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 1.0e-58 230.3 158 75.3
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.0e-58 230.3 158 73.4
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 1.3e-58 229.9 159 72.3
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 1.3e-58 229.9 159 73.6
EL10Ac6g14463 Beta vulgaris HOM05D003846 ORTHO05D004726 1.7e-58 229.6 158 72.2
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 1.7e-58 229.6 158 72.2
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 1.7e-58 229.6 159 72.3
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 2.2e-58 229.2 159 73.6
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 2.2e-58 229.2 159 72.3
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 2.2e-58 229.2 158 73.4
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 2.9e-58 228.8 159 73.6
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 3.8e-58 228.4 159 73.0
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 3.8e-58 228.4 159 72.3
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 3.8e-58 228.4 159 73.0
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 6.5e-58 227.6 160 75.0
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 6.5e-58 227.6 160 73.8
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 6.5e-58 227.6 159 73.6
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 8.5e-58 227.3 159 72.3
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 8.5e-58 227.3 159 71.1
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 1.1e-57 226.9 159 72.3
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 1.1e-57 226.9 159 73.6
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 1.5e-57 226.5 159 72.3
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.9e-57 226.1 159 72.3
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 2.5e-57 225.7 159 71.7
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 2.5e-57 225.7 159 71.1
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 3.2e-57 225.3 159 72.3
CDE11G1133 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 4.2e-57 224.9 161 70.8
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 4.2e-57 224.9 159 71.7
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 4.2e-57 224.9 159 71.1
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 4.2e-57 224.9 159 73.0
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 5.5e-57 224.6 159 74.2
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 5.5e-57 224.6 159 72.3
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 7.2e-57 224.2 159 73.0
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 7.2e-57 224.2 159 72.3
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 7.2e-57 224.2 159 72.3
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 7.2e-57 224.2 159 71.7
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 7.2e-57 224.2 159 71.7
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 7.2e-57 224.2 157 72.0
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 9.4e-57 223.8 159 72.3
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 9.4e-57 223.8 159 72.3
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 9.4e-57 223.8 159 73.0
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 9.4e-57 223.8 159 73.0
RcHm_v2.0_Chr4g0435651 Rosa chinensis HOM05D003846 ORTHO05D004726 1.2e-56 223.4 157 73.9
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 1.6e-56 223.0 159 72.3
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 2.7e-56 222.2 159 71.7
PSO063G1115 Papaver somniferum HOM05D003846 ORTHO05D004726 2.7e-56 222.2 161 73.3
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 2.7e-56 222.2 157 72.0
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 4.7e-56 221.5 160 70.0
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 4.7e-56 221.5 161 71.4
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 4.7e-56 221.5 159 73.0
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 6.1e-56 221.1 159 72.3
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 1.4e-55 219.9 161 71.4
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 1.8e-55 219.5 161 71.4
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 3.0e-55 218.8 161 70.2
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 3.0e-55 218.8 159 70.4
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 3.0e-55 218.8 139 78.4
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 4.0e-55 218.4 159 71.1
PSO782G3649 Papaver somniferum HOM05D003846 ORTHO05D004726 5.2e-55 218.0 161 72.0
Psat2g088560 Pisum sativum HOM05D003846 ORTHO05D004726 5.2e-55 218.0 141 78.0
SEGI_01063 Sequoiadendron giganteum HOM05D003846 ORTHO05D004726 1.1e-54 216.9 163 68.7
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 1.5e-54 216.5 160 71.2
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 2.0e-54 216.1 162 70.4
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 2.0e-54 216.1 162 70.4
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 2.0e-54 216.1 159 69.8
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 2.0e-54 216.1 156 69.2
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 2.6e-54 215.7 162 70.4
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 2.6e-54 215.7 120 88.3
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 3.3e-54 215.3 159 71.1
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 3.3e-54 215.3 159 72.3
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 3.3e-54 215.3 159 69.2
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 3.3e-54 215.3 159 71.7
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 4.4e-54 214.9 159 68.6
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 5.7e-54 214.5 159 67.9
Sed0009794 Sechium edule HOM05D003846 ORTHO05D004726 5.7e-54 214.5 158 69.6
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 7.5e-54 214.2 159 69.2
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 7.5e-54 214.2 164 70.7
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 9.7e-54 213.8 139 77.0
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 1.7e-53 213.0 131 80.2
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 1.7e-53 213.0 120 86.7
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 2.2e-53 212.6 132 81.8
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 3.7e-53 211.8 139 77.7
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea HOM05D003846 ORTHO05D004726 4.8e-53 211.5 159 69.8
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 6.3e-53 211.1 159 67.9
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 6.3e-53 211.1 156 71.2
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 8.2e-53 210.7 161 68.9
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 1.1e-52 210.3 163 69.3
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 3.1e-52 208.8 164 67.7
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 3.1e-52 208.8 118 83.9
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 4.1e-52 208.4 163 68.7
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 4.1e-52 208.4 120 85.0
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 5.3e-52 208.0 139 76.3
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 7.0e-52 207.6 119 84.0
MD14G1223300 Malus domestica HOM05D003846 ORTHO05D004726 7.0e-52 207.6 161 66.5
Prupe.5G218600 Prunus persica HOM05D003846 ORTHO05D004726 9.1e-52 207.2 157 69.4
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 9.1e-52 207.2 120 82.5
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.2e-51 206.8 160 67.5
RcHm_v2.0_Chr7g0184811 Rosa chinensis HOM05D003846 ORTHO05D004726 1.2e-51 206.8 157 68.8
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 1.6e-51 206.5 160 68.1
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 2.0e-51 206.1 164 65.9
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 4.5e-51 204.9 142 74.6
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 5.9e-51 204.5 120 82.5
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 5.9e-51 204.5 160 67.5
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 1.0e-50 203.8 149 71.1
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 1.3e-50 203.4 163 67.5
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 1.3e-50 203.4 164 65.9
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 1.7e-50 203.0 162 68.5
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 1.7e-50 203.0 162 68.5
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 1.7e-50 203.0 185 60.0
FAN04G0089 Fragaria x ananassa HOM05D003846 ORTHO05D004726 2.2e-50 202.6 161 65.8
FAN18G2723 Fragaria x ananassa HOM05D003846 ORTHO05D004726 2.2e-50 202.6 161 65.8
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 2.2e-50 202.6 162 69.1
FvH4_5g12540 Fragaria vesca HOM05D003846 ORTHO05D004726 2.9e-50 202.2 158 67.1
FAN18G2095 Fragaria x ananassa HOM05D003846 ORTHO05D004726 2.9e-50 202.2 158 67.1
FAN08G1200 Fragaria x ananassa HOM05D003846 ORTHO05D004726 3.8e-50 201.8 158 66.5
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 6.5e-50 201.1 127 79.5
FAN13G1296 Fragaria x ananassa HOM05D003846 ORTHO05D004726 6.5e-50 201.1 158 66.5
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 8.5e-50 200.7 162 67.9
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 4.2e-49 198.4 164 63.4
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 4.2e-49 198.4 156 66.0
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 7.2e-49 197.6 153 69.3
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 7.2e-49 197.6 120 78.3
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 4.7e-48 194.9 151 66.9
Sed0022338 Sechium edule HOM05D003846 ORTHO05D004726 8.0e-48 194.1 160 65.6
Psat1g039320 Pisum sativum HOM05D003846 ORTHO05D004726 1.8e-47 193.0 118 81.4
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 1.8e-47 193.0 156 65.4
Medtr6g085050 Medicago truncatula HOM05D003846 ORTHO05D004726 2.3e-47 192.6 157 66.9
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 3.0e-47 192.2 164 62.2
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 4.0e-47 191.8 120 80.0
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 5.2e-47 191.4 140 71.4
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 1.2e-46 190.3 135 70.4
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 1.2e-46 190.3 109 85.3
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 7.5e-46 187.6 213 51.6
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 9.8e-46 187.2 145 70.3
SGA_v2.0_scaffold63G21786 Striga asiatica HOM05D003846 ORTHO05D004726 9.8e-46 187.2 134 69.4
HPP92_027194 Vanilla planifolia HOM05D003846 ORTHO05D004726 4.8e-45 184.9 142 71.8
Pp3c10_21560 Physcomitrium patens HOM05D003846 ORTHO05D004726 5.9e-43 177.9 106 80.2
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 1.0e-42 177.2 135 65.9
GSVIVG01011936001 Vitis vinifera HOM05D003846 ORTHO05D004726 3.8e-42 175.3 158 61.4
Pp3c20_21920 Physcomitrium patens HOM05D003846 ORTHO05D004726 6.5e-42 174.5 114 73.7
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 1.7e-37 159.8 89 84.3
CBR_g40856 Chara braunii HOM05D003846 ORTHO05D004726 7.0e-36 154.5 119 66.4
DCAR_011545 Daucus carota HOM05D003846 ORTHO05D004726 4.5e-35 151.8 83 84.3
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 1.8e-28 129.8 118 59.3
Manes.11G040441 Manihot esculenta HOM05D000085 ORTHO05D249439 8.0e-24 114.4 95 57.9
Lsat_1_v5_gn_4_145001 Lactuca sativa HOM05D003846 ORTHO05D004726 1.8e-23 113.2 66 78.8
CDE05G0888 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 6.8e-23 111.3 141 46.8
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 2.6e-22 109.4 106 56.6
Cre17.g696400 Chlamydomonas reinhardtii HOM05D003846 ORTHO05D004726 5.8e-22 108.2 111 49.5
Manes.11G039928 Manihot esculenta HOM05D000085 ORTHO05D250131 9.8e-22 107.5 113 50.4
Manes.11G040408 Manihot esculenta HOM05D003846 ORTHO05D004726 1.7e-21 106.7 88 58.0
TPR.G20310 Trifolium pratense HOM05D003846 ORTHO05D004726 5.4e-20 101.7 54 88.9
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 6.0e-19 98.2 91 58.2
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 6.0e-19 98.2 91 58.2
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.7e-18 96.7 87 58.6
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.7e-18 96.7 87 58.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 5.6e-17 91.7 72 68.1
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 9.5e-17 90.9 53 79.2
Lj6A762T41 Lonicera japonica HOM05D003846 ORTHO05D004726 3.6e-16 89.0 55 74.5
Aa31sc562G10 Aethionema arabicum HOM05D003846 ORTHO05D004726 8.9e-15 84.3 48 79.2
Nn4g23759 Nelumbo nucifera HOM05D003846 ORTHO05D004726 2.9e-13 79.3 72 58.3
CsaV3_5G034070 Cucumis sativus L. HOM05D000040 ORTHO05D000759 6.0e-11 71.6 75 53.3
FAN12G0550 Fragaria x ananassa HOM05D003846 ORTHO05D004726 7.8e-11 71.2 63 65.1
C06p41190 Brassica napus HOM05D003846 ORTHO05D004726 1.1e-07 60.8 40 70.0
Aa31LG6G7310 Aethionema arabicum HOM05D003846 ORTHO05D058653 5.2e-07 58.5 32 84.4


User provided reference genes

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