Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.6e-126 455.3 215 100.0
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.3e-16 90.9 103 53.4
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 3.6e-11 72.8 100 39.0
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 4.8e-11 72.4 107 35.5
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 1.4e-10 70.9 52 65.4
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.4e-10 70.9 55 63.6
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.8e-10 70.5 55 61.8
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.8e-10 70.5 56 60.7
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 2.4e-10 70.1 51 60.8
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.1e-10 69.7 103 38.8
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 3.1e-10 69.7 63 54.0
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 4.0e-10 69.3 56 58.9
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 4.0e-10 69.3 70 55.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 4.0e-10 69.3 55 61.8
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 4.0e-10 69.3 51 62.7
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 5.3e-10 68.9 55 56.4
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 5.3e-10 68.9 55 54.5
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 5.3e-10 68.9 55 58.2
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 5.3e-10 68.9 66 53.0
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 6.9e-10 68.6 51 60.8
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 6.9e-10 68.6 55 54.5
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 6.9e-10 68.6 55 54.5
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 9.0e-10 68.2 55 54.5
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 9.0e-10 68.2 55 60.0
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 9.0e-10 68.2 55 56.4
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.2e-09 67.8 51 60.8
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.2e-09 67.8 51 60.8
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.2e-09 67.8 51 60.8
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.2e-09 67.8 55 58.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.5e-09 67.4 55 58.2
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.5e-09 67.4 51 60.8
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.5e-09 67.4 101 35.6
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 2.0e-09 67.0 55 52.7
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 2.0e-09 67.0 55 52.7
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.0e-09 67.0 55 52.7
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 2.0e-09 67.0 75 45.3
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.6e-09 66.6 56 58.9
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 2.6e-09 66.6 52 57.7
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 2.6e-09 66.6 51 60.8
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.6e-09 66.6 68 48.5
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 3.4e-09 66.2 55 52.7
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.4e-09 66.2 52 61.5
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 3.4e-09 66.2 55 52.7
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 3.4e-09 66.2 55 52.7
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 3.4e-09 66.2 55 52.7
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 3.4e-09 66.2 55 52.7
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 3.4e-09 66.2 55 52.7
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 3.4e-09 66.2 55 58.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 3.4e-09 66.2 55 52.7
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.4e-09 66.2 55 60.0
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.4e-09 66.2 56 57.1
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.4e-09 66.2 56 57.1
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 3.4e-09 66.2 55 58.2
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 4.5e-09 65.9 52 61.5
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 5.8e-09 65.5 102 40.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 5.8e-09 65.5 52 53.8
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 5.8e-09 65.5 55 56.4
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 5.8e-09 65.5 55 56.4
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 7.6e-09 65.1 55 52.7
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 7.6e-09 65.1 55 52.7
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 7.6e-09 65.1 55 56.4
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 9.9e-09 64.7 55 50.9
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.3e-08 64.3 55 54.5
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.3e-08 64.3 51 58.8
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.3e-08 64.3 51 58.8
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.3e-08 64.3 65 47.7
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 1.7e-08 63.9 55 52.7
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.2e-08 63.5 51 58.8
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 2.2e-08 63.5 51 58.8
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 2.9e-08 63.2 55 50.9
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.9e-08 63.2 51 58.8
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.9e-08 63.2 51 58.8
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.9e-08 63.2 65 49.2
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 2.9e-08 63.2 55 52.7
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 3.8e-08 62.8 55 56.4
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 3.8e-08 62.8 51 56.9
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 3.8e-08 62.8 55 52.7
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 3.8e-08 62.8 55 49.1
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 4.9e-08 62.4 51 56.9
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.9e-08 62.4 54 53.7
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 4.9e-08 62.4 55 50.9
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 6.4e-08 62.0 51 56.9
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 6.4e-08 62.0 51 51.0
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 8.4e-08 61.6 55 52.7
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 8.4e-08 61.6 55 50.9
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 8.4e-08 61.6 55 50.9
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 8.4e-08 61.6 55 50.9
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.1e-07 61.2 51 56.9
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.1e-07 61.2 55 52.7
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.4e-07 60.8 52 51.9
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.4e-07 60.8 53 54.7
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.4e-07 60.8 51 52.9
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.9e-07 60.5 102 39.2
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.9e-07 60.5 52 53.8
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.9e-07 60.5 69 42.0
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.9e-07 60.5 51 51.0
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.9e-07 60.5 51 51.0
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.9e-07 60.5 55 52.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 2.4e-07 60.1 52 53.8
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 2.4e-07 60.1 51 52.9
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 2.4e-07 60.1 55 50.9
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 3.2e-07 59.7 51 49.0
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 4.2e-07 59.3 51 51.0
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 4.2e-07 59.3 51 52.9
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 4.2e-07 59.3 51 52.9
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 4.2e-07 59.3 51 52.9
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 4.2e-07 59.3 51 52.9
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 7.1e-07 58.5 55 49.1
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 7.1e-07 58.5 55 41.8
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 9.3e-07 58.2 51 51.0
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 9.3e-07 58.2 55 50.9
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 9.3e-07 58.2 37 67.6
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 9.3e-07 58.2 54 51.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.6e-06 57.4 77 39.0
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.1e-06 57.0 51 49.0
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.1e-06 57.0 56 53.6
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.1e-06 57.0 56 53.6
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 2.7e-06 56.6 51 52.9
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 2.7e-06 56.6 51 52.9
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 2.7e-06 56.6 51 52.9
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 2.7e-06 56.6 93 32.3
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 4.6e-06 55.8 56 50.0
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 7.9e-06 55.1 99 34.3


User provided reference genes

Program Settings