Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 7.0e-51 203.8 110 100.0
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.4e-43 179.5 111 89.2
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 1.8e-43 179.1 111 89.2
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 1.8e-43 179.1 111 88.3
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 3.2e-43 178.3 111 87.4
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 3.2e-43 178.3 111 89.2
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 7.0e-43 177.2 111 88.3
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 1.2e-42 176.4 108 87.0
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 2.0e-42 175.6 112 85.7
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 2.0e-42 175.6 112 87.5
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 86.5
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 2.7e-42 175.3 106 87.7
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 4.6e-42 174.5 108 86.1
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 4.6e-42 174.5 112 87.5
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 6.0e-42 174.1 110 88.2
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 85.6
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 86.5
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 85.6
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 1.3e-41 172.9 111 86.5
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 1.3e-41 172.9 106 89.6
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 1.7e-41 172.6 103 88.3
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 1.7e-41 172.6 111 85.6
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 2.3e-41 172.2 111 84.7
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 84.7
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 84.7
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 84.7
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 87.4
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 3.0e-41 171.8 109 87.2
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 87.4
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 3.9e-41 171.4 111 86.5
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 3.9e-41 171.4 111 86.5
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 3.9e-41 171.4 111 86.5
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 3.9e-41 171.4 109 87.2
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 3.9e-41 171.4 108 88.0
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 5.0e-41 171.0 111 84.7
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 5.0e-41 171.0 106 88.7
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 5.0e-41 171.0 111 83.8
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 5.0e-41 171.0 109 85.3
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 5.0e-41 171.0 111 83.8
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 6.6e-41 170.6 112 84.8
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 6.6e-41 170.6 106 85.8
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 8.6e-41 170.2 109 87.2
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 1.1e-40 169.9 112 83.9
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 3.3e-40 168.3 112 83.9
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 82.1
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 4.3e-40 167.9 100 89.0
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 84.7
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 7.3e-40 167.2 109 85.3
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 1.2e-39 166.4 124 76.6
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.6e-39 166.0 112 82.1
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 2.8e-39 165.2 112 83.0
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 2.8e-39 165.2 109 82.6
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 6.2e-39 164.1 111 82.0
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 6.2e-39 164.1 111 82.9
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 6.2e-39 164.1 109 84.4
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 8.0e-39 163.7 112 82.1
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 8.0e-39 163.7 111 83.8
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 1.1e-38 163.3 133 71.4
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.1e-38 163.3 108 84.3
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 1.4e-38 162.9 99 87.9
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 1.8e-38 162.5 108 79.6
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 1.8e-38 162.5 109 83.5
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 2.3e-38 162.2 111 82.9
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.3e-38 162.2 115 80.9
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 6.8e-38 160.6 111 82.0
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.8e-38 160.6 111 82.0
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 6.8e-38 160.6 111 82.0
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 1.2e-37 159.8 113 76.1
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.5e-37 159.5 111 82.0
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 1.5e-37 159.5 110 80.0
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.5e-37 159.5 111 82.0
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.0e-37 159.1 111 82.0
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 80.0
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 80.0
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 80.2
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 80.2
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 80.2
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 3.4e-37 158.3 111 81.1
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 4.4e-37 157.9 112 77.7
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 5.8e-37 157.5 111 80.2
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 5.8e-37 157.5 108 78.7
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 7.5e-37 157.1 110 79.1
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 7.5e-37 157.1 112 76.8
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 9.8e-37 156.8 108 78.7
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 9.8e-37 156.8 108 78.7
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 9.8e-37 156.8 108 78.7
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 4.9e-36 154.5 107 78.5
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 4.9e-36 154.5 107 78.5
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 76.4
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 1.9e-35 152.5 110 77.3
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 4.1e-35 151.4 110 77.3
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 5.4e-35 151.0 102 77.5
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 7.0e-35 150.6 112 76.8
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 9.2e-35 150.2 110 76.4
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.2e-34 149.8 110 75.5
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.2e-34 149.8 110 75.5
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 2.1e-34 149.1 107 78.5
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 6.0e-34 147.5 110 74.5
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 7.8e-34 147.1 110 75.5
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.0e-33 146.7 99 82.8
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 1.0e-33 146.7 110 74.5
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 1.0e-33 146.7 110 74.5
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 1.0e-33 146.7 110 74.5
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 1.0e-33 146.7 110 74.5
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 1.0e-33 146.7 110 73.6
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 2.3e-33 145.6 111 75.7
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.3e-33 145.6 110 73.6
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 3.9e-33 144.8 110 73.6
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 3.9e-33 144.8 110 74.5
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 6.6e-33 144.1 111 74.8
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.1e-32 143.3 111 75.7
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 1.9e-32 142.5 112 75.9
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 3.3e-32 141.7 110 72.7
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 4.3e-32 141.4 110 70.9
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.6e-31 139.4 112 72.3
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 2.8e-31 138.7 98 78.6
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 4.7e-31 137.9 97 73.2
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 8.1e-31 137.1 111 70.3
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.1e-30 136.7 97 75.3
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.1e-30 136.7 111 73.0
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.4e-30 136.3 107 69.2
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.8e-30 136.0 110 69.1
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 5.2e-30 134.4 182 51.1
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 6.8e-30 134.0 107 71.0
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 8.9e-30 133.7 108 69.4
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 2.2e-28 129.0 104 70.2
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.9e-28 128.6 110 69.1
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 1.4e-27 126.3 83 86.7
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.6e-26 122.9 85 76.5
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.5e-26 121.7 110 66.4
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 1.1e-24 116.7 102 65.7
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 2.5e-24 115.5 96 64.6
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 4.4e-21 104.8 110 60.0
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.4e-19 99.8 68 80.9
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 4.6e-18 94.7 57 86.0
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 3.6e-15 85.1 55 81.8
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 4.7e-15 84.7 57 77.2
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.5e-13 79.7 85 58.8
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 2.0e-13 79.3 92 54.3
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 5.8e-13 77.8 62 69.4
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 1.3e-12 76.6 110 44.5
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.3e-12 76.6 60 70.0
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 2.2e-12 75.9 62 69.4
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 9.3e-11 70.5 53 73.6
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 2.1e-07 59.3 102 40.2


User provided reference genes

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