Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 5.8e-36 153.7 77 100.0
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 2.2e-27 125.2 75 80.0
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 4.9e-27 124.0 73 76.7
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 4.9e-27 124.0 73 78.1
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 6.5e-27 123.6 75 78.7
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 1.1e-26 122.9 75 77.3
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.5e-26 121.7 75 77.3
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 2.5e-26 121.7 75 77.3
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 4.2e-26 120.9 73 79.5
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 9.3e-26 119.8 73 76.7
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 9.3e-26 119.8 75 76.0
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 1.2e-25 119.4 73 74.0
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 2.1e-25 118.6 75 73.3
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 7.9e-25 116.7 73 75.3
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 7.9e-25 116.7 73 74.0
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 1.0e-24 116.3 73 74.0
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 1.3e-24 115.9 73 71.2
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 1.3e-24 115.9 73 71.2
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 1.8e-24 115.5 73 74.0
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.8e-24 115.5 73 75.3
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 2.3e-24 115.2 73 74.0
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 2.3e-24 115.2 73 69.9
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 2.3e-24 115.2 73 69.9
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 3.0e-24 114.8 73 72.6
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 3.0e-24 114.8 73 72.6
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 3.9e-24 114.4 75 69.3
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 3.9e-24 114.4 73 74.0
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 3.9e-24 114.4 73 72.6
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 3.9e-24 114.4 75 72.0
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 5.1e-24 114.0 73 69.9
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 8.7e-24 113.2 73 72.6
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.1e-23 112.8 73 75.3
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 1.5e-23 112.5 73 71.2
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.5e-23 112.5 75 73.3
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.5e-23 112.5 73 71.2
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 1.9e-23 112.1 73 69.9
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 1.9e-23 112.1 73 69.9
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.9e-23 112.1 73 68.5
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 2.5e-23 111.7 73 67.1
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 3.3e-23 111.3 73 71.2
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 4.3e-23 110.9 73 71.2
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 4.3e-23 110.9 73 69.9
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 4.3e-23 110.9 73 69.9
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 5.7e-23 110.5 67 76.1
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 5.7e-23 110.5 75 68.0
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 5.7e-23 110.5 75 68.0
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 9.6e-23 109.8 71 73.2
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 9.6e-23 109.8 75 68.0
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 9.6e-23 109.8 75 68.0
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.3e-22 109.4 73 67.1
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.3e-22 109.4 73 65.8
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 1.3e-22 109.4 75 66.7
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 1.3e-22 109.4 73 67.1
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 2.8e-22 108.2 75 66.7
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 3.7e-22 107.8 75 65.3
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 4.8e-22 107.5 75 64.0
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 4.8e-22 107.5 75 64.0
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 4.8e-22 107.5 75 68.0
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 6.3e-22 107.1 75 64.0
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 6.3e-22 107.1 71 69.0
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 8.2e-22 106.7 67 71.6
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 1.4e-21 105.9 73 64.4
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 1.4e-21 105.9 73 67.1
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.4e-21 105.9 75 64.0
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 1.8e-21 105.5 68 70.6
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 2.4e-21 105.1 75 62.7
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 2.4e-21 105.1 75 62.7
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 2.4e-21 105.1 75 62.7
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 2.4e-21 105.1 75 62.7
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 2.4e-21 105.1 75 62.7
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 2.4e-21 105.1 75 62.7
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 2.4e-21 105.1 75 62.7
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 2.4e-21 105.1 75 62.7
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.4e-21 105.1 76 63.2
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 2.4e-21 105.1 75 61.3
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 2.4e-21 105.1 73 68.5
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 5.3e-21 104.0 75 62.7
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 9.0e-21 103.2 75 60.0
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 9.0e-21 103.2 72 63.9
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 9.0e-21 103.2 68 69.1
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 2.0e-20 102.1 73 61.6
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 2.6e-20 101.7 72 62.5
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 2.6e-20 101.7 68 67.6
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 2.6e-20 101.7 63 74.6
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 2.6e-20 101.7 63 74.6
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 3.4e-20 101.3 68 66.2
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 3.4e-20 101.3 67 68.7
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 3.4e-20 101.3 63 74.6
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 3.4e-20 101.3 63 74.6
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 4.5e-20 100.9 63 74.6
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 5.9e-20 100.5 75 61.3
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 5.9e-20 100.5 75 61.3
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 1.0e-19 99.8 68 64.7
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 1.3e-19 99.4 63 73.0
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 1.7e-19 99.0 63 73.0
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 1.7e-19 99.0 72 65.3
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 2.9e-19 98.2 63 74.6
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 3.8e-19 97.8 63 71.4
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 8.5e-19 96.7 63 71.4
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.1e-18 96.3 68 64.7
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.4e-18 95.9 73 58.9
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.4e-18 95.9 73 63.0
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.4e-18 95.9 73 61.6
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.4e-18 95.9 73 61.6
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.4e-18 95.9 73 61.6
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.4e-18 95.9 73 61.6
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 1.4e-18 95.9 63 68.3
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.9e-18 95.5 73 61.6
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 4.2e-18 94.4 70 67.1
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 5.5e-18 94.0 73 61.6
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 7.2e-18 93.6 73 57.5
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 9.3e-18 93.2 73 64.4
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 9.3e-18 93.2 68 66.2
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 9.3e-18 93.2 73 60.3
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 9.3e-18 93.2 70 70.0
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 2.1e-17 92.0 63 68.3
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 2.3e-16 88.6 60 66.7
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 1.2e-12 76.3 73 47.9
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 8.5e-11 70.1 69 50.7
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 2.5e-10 68.6 73 43.8
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 2.7e-09 65.1 73 41.1
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.5e-07 59.3 38 76.3
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 2.0e-07 58.9 34 85.3
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 2.8e-06 55.1 75 36.0
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 3.7e-06 54.7 46 58.7


User provided reference genes

Program Settings