Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015958 Vanilla planifolia HOM05D001340 ORTHO05D002318 9.3e-234 813.1 405 100.0
HPP92_015971 Vanilla planifolia HOM05D001340 ORTHO05D002318 9.4e-69 265.0 298 57.4
TAR362G0447 Trochodendron aralioides HOM05D001340 ORTHO05D002318 5.6e-29 132.9 311 35.7
TAR633G1266 Trochodendron aralioides HOM05D001340 ORTHO05D002318 8.1e-28 129.0 304 36.2
CSS0002436 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 3.2e-24 117.1 288 35.8
RcHm_v2.0_Chr7g0241001 Rosa chinensis HOM05D001340 ORTHO05D002318 2.1e-23 114.4 321 33.0
TAR365G0840 Trochodendron aralioides HOM05D001340 ORTHO05D002318 6.0e-23 112.8 222 41.9
MBI19_g40072_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D002318 1.3e-22 111.7 309 35.0
Prupe.8G265700 Prunus persica HOM05D001340 ORTHO05D002318 1.3e-22 111.7 281 34.2
Eucgr.K03549 Eucalyptus grandis HOM05D001340 ORTHO05D002318 2.3e-22 110.9 270 35.9
Gohir.A07G128900 Gossypium hirsutum HOM05D001340 ORTHO05D002318 3.0e-22 110.5 267 36.7
Gorai.001G144600 Gossypium raimondii HOM05D001340 ORTHO05D002318 3.0e-22 110.5 310 33.2
FAN13G2122 Fragaria x ananassa HOM05D001340 ORTHO05D002318 6.6e-22 109.4 340 30.6
CSS0006677 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 2.5e-21 107.5 292 34.2
FAN04G0292 Fragaria x ananassa HOM05D001340 ORTHO05D002318 3.3e-21 107.1 273 33.7
Dinv24448 Davidia involucrata HOM05D001340 ORTHO05D002318 5.6e-21 106.3 275 32.7
Aqoxy3G00582 Aquilegia oxysepala HOM05D001340 ORTHO05D002318 9.6e-21 105.5 303 32.7
CDE02G2681 Ceratophyllum demersum HOM05D001340 ORTHO05D002318 9.6e-21 105.5 296 28.7
Gohir.D07G133300 Gossypium hirsutum HOM05D001340 ORTHO05D002318 9.6e-21 105.5 284 33.8
EL10As5g23542 Beta vulgaris HOM05D001340 ORTHO05D002318 4.7e-20 103.2 272 36.8
Duzib133G1523 Durio zibethinus HOM05D001340 ORTHO05D002318 6.2e-20 102.8 265 37.4
Dinv10110 Davidia involucrata HOM05D001340 ORTHO05D002318 8.1e-20 102.4 290 33.4
FvH4_5g39030 Fragaria vesca HOM05D001340 ORTHO05D002318 8.1e-20 102.4 335 30.7
MD00G1140600 Malus domestica HOM05D001340 ORTHO05D002318 1.1e-19 102.1 279 33.3
TPR.G4096 Trifolium pratense HOM05D001340 ORTHO05D002318 1.1e-19 102.1 312 31.7
Actinidia21395 Actinidia chinensis HOM05D001340 ORTHO05D002318 1.4e-19 101.7 290 31.4
Ah.02g112340 Amaranthus hybridus HOM05D001340 ORTHO05D002318 1.4e-19 101.7 316 32.3
Manes.08G110850 Manihot esculenta HOM05D001340 ORTHO05D002318 1.4e-19 101.7 291 34.0
Dinv33126 Davidia involucrata HOM05D001340 ORTHO05D002318 1.8e-19 101.3 280 31.8
PGR044G2294 Punica granatum HOM05D001340 ORTHO05D002318 3.1e-19 100.5 256 38.7
Cfa005783 Carpinus fangiana HOM05D001340 ORTHO05D002318 4.0e-19 100.1 281 34.9
Haze_05057 Corylus avellana HOM05D001340 ORTHO05D002318 4.0e-19 100.1 287 34.8
Glyma.19G217200 Glycine max HOM05D001340 ORTHO05D002318 4.0e-19 100.1 330 30.3
Hund02943 Selenicereus undatus HOM05D001340 ORTHO05D002318 6.9e-19 99.4 299 32.1
Actinidia35519 Actinidia chinensis HOM05D001340 ORTHO05D002318 1.2e-18 98.6 336 28.3
Lalb_Chr06g0166911 Lupinus albus HOM05D001340 ORTHO05D002318 2.0e-18 97.8 246 35.4
Actinidia17907 Actinidia chinensis HOM05D001340 ORTHO05D002318 2.6e-18 97.4 251 33.1
MD03G1292700 Malus domestica HOM05D001340 ORTHO05D002318 3.4e-18 97.1 278 33.1
Actinidia20989 Actinidia chinensis HOM05D001340 ORTHO05D002318 4.4e-18 96.7 309 33.3
CSS0011362 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 4.4e-18 96.7 417 26.4
PSO357G0595 Papaver somniferum HOM05D001340 ORTHO05D002318 5.8e-18 96.3 280 32.1
CSS0038844 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 7.6e-18 95.9 219 34.7
Hma1.2p1_0486F.1_g163370 Hydrangea macrophylla HOM05D001340 ORTHO05D002318 1.3e-17 95.1 271 32.8
Lalb_Chr18g0046671 Lupinus albus HOM05D001340 ORTHO05D002318 1.3e-17 95.1 318 30.5
PSO210G4454 Papaver somniferum HOM05D001340 ORTHO05D002318 1.3e-17 95.1 270 32.6
MD12G1205400 Malus domestica HOM05D001340 ORTHO05D002318 1.7e-17 94.7 273 34.4
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 1.7e-17 94.7 327 30.0
MBI18_g17310_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D002318 2.9e-17 94.0 313 29.7
Phvul.001G213800 Phaseolus vulgaris HOM05D001340 ORTHO05D002318 3.8e-17 93.6 278 30.6
Cpa.g.sc18.58 Carica papaya HOM05D001340 ORTHO05D002318 4.9e-17 93.2 329 30.1
Ca_09216_v3 Cicer arietinum L. HOM05D001340 ORTHO05D002318 4.9e-17 93.2 263 33.5
Psat3g019600 Pisum sativum HOM05D001340 ORTHO05D002318 4.9e-17 93.2 316 31.3
GSVIVG01028133001 Vitis vinifera HOM05D001340 ORTHO05D002318 4.9e-17 93.2 242 36.0
CDE09G1391 Ceratophyllum demersum HOM05D001340 ORTHO05D002318 6.4e-17 92.8 213 33.3
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 1.1e-16 92.0 288 30.6
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.1e-16 92.0 273 33.7
TWI36G0984 Tripterygium wilfordii HOM05D001340 ORTHO05D002318 1.4e-16 91.7 275 32.0
Manes.05G004500 Manihot esculenta HOM05D001340 ORTHO05D002318 2.4e-16 90.9 315 31.1
RcHm_v2.0_Chr3g0457181 Rosa chinensis HOM05D001340 ORTHO05D002318 2.4e-16 90.9 276 32.6
arahy.Tifrunner.gnm1.ann1.IPGA62 Arachis hypogaea HOM05D001340 ORTHO05D002318 7.1e-16 89.4 256 33.6
FvH4_6g07480 Fragaria vesca HOM05D001340 ORTHO05D002318 7.1e-16 89.4 279 33.3
Glyma.03G220300 Glycine max HOM05D001340 ORTHO05D002318 1.2e-15 88.6 245 33.9
PSO170G0296 Papaver somniferum HOM05D001340 ORTHO05D002318 1.6e-15 88.2 206 37.9
Sabra13G0007000 Salix brachista HOM05D001340 ORTHO05D002318 1.6e-15 88.2 291 29.9
VMungo1383G2602 Vigna mungo HOM05D001340 ORTHO05D002318 2.1e-15 87.8 246 32.5
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 3.5e-15 87.0 279 33.0
Thecc.01G314700 Theobroma cacao HOM05D001340 ORTHO05D002318 4.6e-15 86.7 275 33.1
Thecc.05G323500 Theobroma cacao HOM05D001340 ORTHO05D002318 4.6e-15 86.7 280 32.1
CiPaw.07G118500 Carya illinoinensis HOM05D001340 ORTHO05D002318 6.0e-15 86.3 186 37.6
MELO3C015918.2 Cucumis melo HOM05D001340 ORTHO05D002318 6.0e-15 86.3 272 30.1
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 6.0e-15 86.3 262 34.0
Hund09636 Selenicereus undatus HOM05D001340 ORTHO05D002318 6.0e-15 86.3 254 32.7
Atru.chr2.202 Acer truncatum HOM05D001340 ORTHO05D002318 7.8e-15 85.9 291 29.6
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 7.8e-15 85.9 282 29.8
Haze_04057 Corylus avellana HOM05D001340 ORTHO05D002318 1.7e-14 84.7 283 29.3
Duzib177G1143 Durio zibethinus HOM05D001340 ORTHO05D002318 1.7e-14 84.7 285 31.6
Cc01_g21510 Coffea canephora HOM05D001340 ORTHO05D002318 2.3e-14 84.3 301 28.6
CSS0003451 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 3.0e-14 84.0 257 31.1
Gohir.D11G283900 Gossypium hirsutum HOM05D001340 ORTHO05D002318 3.0e-14 84.0 296 31.4
Potri.013G008300 Populus trichocarpa HOM05D001340 ORTHO05D002318 5.1e-14 83.2 281 31.3
arahy.Tifrunner.gnm1.ann1.0F9TFU Arachis hypogaea HOM05D001340 ORTHO05D002318 6.6e-14 82.8 246 30.9
Dinv15186 Davidia involucrata HOM05D001340 ORTHO05D002318 6.6e-14 82.8 233 31.3
Potri.005G014000 Populus trichocarpa HOM05D001340 ORTHO05D002318 6.6e-14 82.8 285 31.2
Gorai.007G306800 Gossypium raimondii HOM05D001340 ORTHO05D002318 8.7e-14 82.4 296 31.1
CsaV3_7G030020 Cucumis sativus L. HOM05D001340 ORTHO05D002318 1.5e-13 81.6 272 32.0
THA.LOC104800350 Tarenaya hassleriana HOM05D001340 ORTHO05D002318 1.5e-13 81.6 241 32.8
TWI56G0128 Tripterygium wilfordii HOM05D001340 ORTHO05D002318 1.5e-13 81.6 286 30.1
Duzib138G1716 Durio zibethinus HOM05D001340 ORTHO05D002318 2.5e-13 80.9 269 33.1
Thhalv10001400m.g Eutrema salsugineum HOM05D001340 ORTHO05D002318 2.5e-13 80.9 287 30.3
Gohir.A11G273800 Gossypium hirsutum HOM05D001340 ORTHO05D002318 3.3e-13 80.5 296 30.4
Hma1.2p1_0008F-1.1_g005580 Hydrangea macrophylla HOM05D001340 ORTHO05D002318 4.3e-13 80.1 288 30.9
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 5.6e-13 79.7 264 31.4
Lj1g0005808 Lotus japonicus HOM05D001340 ORTHO05D002318 5.6e-13 79.7 244 32.8
ATR0796G276 Amborella trichopoda HOM05D001340 ORTHO05D002318 7.3e-13 79.3 222 36.5
Cpa.g.sc48.166 Carica papaya HOM05D001340 ORTHO05D002318 7.3e-13 79.3 284 32.0
Rhsim11G0095400 Rhododendron simsii HOM05D001340 ORTHO05D002318 9.6e-13 79.0 168 36.3
CiPaw.08G155000 Carya illinoinensis HOM05D001340 ORTHO05D002318 1.3e-12 78.6 292 29.8
Atru.chr5.981 Acer truncatum HOM05D001340 ORTHO05D002318 1.6e-12 78.2 272 32.4
CANSAT25G2668 Cannabis sativa HOM05D001340 ORTHO05D002318 1.6e-12 78.2 281 28.8
DCAR_012336 Daucus carota HOM05D001340 ORTHO05D002318 1.6e-12 78.2 328 27.7
Lj5A331T38 Lonicera japonica HOM05D001340 ORTHO05D002318 1.6e-12 78.2 222 33.8
Ciclev10023762m.g Citrus clementina HOM05D001340 ORTHO05D002318 2.1e-12 77.8 276 31.9
MSTRG.18095 Avicennia marina HOM05D001340 ORTHO05D002318 2.8e-12 77.4 275 29.5
QL03p013963 Quercus lobata HOM05D001340 ORTHO05D002318 2.8e-12 77.4 289 29.4
vmacro01565 Vaccinium macrocarpon HOM05D001340 ORTHO05D002318 3.6e-12 77.0 227 33.0
Sed0004948 Sechium edule HOM05D001340 ORTHO05D002318 4.8e-12 76.6 204 33.3
Potri.014G119600 Populus trichocarpa HOM05D001340 ORTHO05D002318 6.2e-12 76.3 273 30.4
arahy.Tifrunner.gnm1.ann1.QXLP7L Arachis hypogaea HOM05D001340 ORTHO05D002318 8.1e-12 75.9 256 30.9
SalBow3G4348 Salvia bowleyana HOM05D001340 ORTHO05D002318 8.1e-12 75.9 141 34.0
Thecc.04G299200 Theobroma cacao HOM05D001340 ORTHO05D002318 8.1e-12 75.9 145 37.2
CiPaw.07G030000 Carya illinoinensis HOM05D001340 ORTHO05D002318 1.4e-11 75.1 287 30.7
CiPaw.08G088900 Carya illinoinensis HOM05D001340 ORTHO05D002318 1.4e-11 75.1 267 31.5
Sabra14G0088600 Salix brachista HOM05D001340 ORTHO05D002318 1.4e-11 75.1 281 29.5
Sp4g29290 Schrenkiella parvula HOM05D001340 ORTHO05D002318 1.8e-11 74.7 281 30.2
Aqoxy2G02739 Aquilegia oxysepala HOM05D001340 ORTHO05D002318 4.0e-11 73.6 269 31.2
TWI18G0419 Tripterygium wilfordii HOM05D001340 ORTHO05D002318 4.0e-11 73.6 275 29.5
QL06p011851 Quercus lobata HOM05D001340 ORTHO05D002318 6.9e-11 72.8 229 33.2
CANSAT54G2406 Cannabis sativa HOM05D001340 ORTHO05D002318 1.2e-10 72.0 287 29.6
arahy.Tifrunner.gnm1.ann1.W1X4YZ Arachis hypogaea HOM05D001340 ORTHO05D002318 3.4e-10 70.5 383 25.6
Lj1A16T39 Lonicera japonica HOM05D001340 ORTHO05D002318 3.4e-10 70.5 321 29.6
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 4.5e-10 70.1 207 31.9
TWI73G0888 Tripterygium wilfordii HOM05D001340 ORTHO05D002318 4.5e-10 70.1 226 28.8
Cpa.g.sc9.70 Carica papaya HOM05D001340 ORTHO05D002318 5.8e-10 69.7 104 43.3
COL.COLO4_34631 Corchorus olitorius HOM05D001340 ORTHO05D002318 5.8e-10 69.7 146 34.9
DCAR_018293 Daucus carota HOM05D001340 ORTHO05D002318 5.8e-10 69.7 307 26.7
Peaxi162Scf00691g00418 Petunia axillaris HOM05D001340 ORTHO05D002318 7.6e-10 69.3 309 28.5
CSS0021219 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 1.3e-09 68.6 207 31.4
Manes.03G204100 Manihot esculenta HOM05D001340 ORTHO05D002318 1.7e-09 68.2 195 30.3
GSVIVG01035006001 Vitis vinifera HOM05D001340 ORTHO05D002318 2.2e-09 67.8 193 30.6
Aa31LG1G28650 Aethionema arabicum HOM05D001340 ORTHO05D002318 3.8e-09 67.0 275 29.1
Carub.0004s3007 Capsella rubella HOM05D001340 ORTHO05D002318 3.8e-09 67.0 291 26.8
Duzib052G0070 Durio zibethinus HOM05D001340 ORTHO05D002318 3.8e-09 67.0 221 29.0
Gohir.A02G054000 Gossypium hirsutum HOM05D001340 ORTHO05D002318 4.9e-09 66.6 145 35.2
Sc19g0003170 Simmondsia chinensis HOM05D001340 ORTHO05D002318 4.9e-09 66.6 221 31.2
Rhsim13G0004400 Rhododendron simsii HOM05D001340 ORTHO05D002318 6.4e-09 66.2 251 31.5
Gohir.D02G058700 Gossypium hirsutum HOM05D001340 ORTHO05D002318 1.1e-08 65.5 223 30.5
Gorai.005G066400 Gossypium raimondii HOM05D001340 ORTHO05D002318 1.4e-08 65.1 150 34.7
HanXRQChr04g0106191 Helianthus annuus HOM05D001340 ORTHO05D002318 1.9e-08 64.7 196 31.6
HanXRQChr06g0168121 Helianthus annuus HOM05D001340 ORTHO05D002318 1.9e-08 64.7 222 32.4
Haze_01290 Corylus avellana HOM05D001340 ORTHO05D002318 5.4e-08 63.2 204 31.9
TWI09G1050 Tripterygium wilfordii HOM05D001340 ORTHO05D002318 7.1e-08 62.8 275 27.3
Sabra02G0161700 Salix brachista HOM05D001340 ORTHO05D002318 9.3e-08 62.4 265 29.4
Sopen01g031130 Solanum pennellii HOM05D001340 ORTHO05D002318 9.3e-08 62.4 300 28.3
Nitab4.5_0007087g0040 Nicotiana tabacum HOM05D001340 ORTHO05D002318 1.6e-07 61.6 303 27.7
AT2G47350 Arabidopsis thaliana HOM05D001340 ORTHO05D002318 2.7e-07 60.8 287 25.8
AUR62024641 Chenopodium quinoa HOM05D001340 ORTHO05D002318 2.7e-07 60.8 130 37.7
Cc02_g35080 Coffea canephora HOM05D001340 ORTHO05D002318 2.7e-07 60.8 291 28.2
COL.COLO4_23221 Corchorus olitorius HOM05D001340 ORTHO05D002318 2.7e-07 60.8 248 31.5
PGSC0003DMG400009046 Solanum tuberosum HOM05D001340 ORTHO05D002318 4.6e-07 60.1 303 28.4
vmacro02397 Vaccinium macrocarpon HOM05D001340 ORTHO05D002318 4.6e-07 60.1 185 31.4
C04p00590 Brassica napus HOM05D001340 ORTHO05D002318 6.0e-07 59.7 263 27.0
Cfa015325 Carpinus fangiana HOM05D001340 ORTHO05D002318 6.0e-07 59.7 141 35.5
Lalb_Chr18g0046681 Lupinus albus HOM05D001340 ORTHO05D002318 6.0e-07 59.7 208 30.8
MD04G1214800 Malus domestica HOM05D001340 ORTHO05D002318 6.0e-07 59.7 256 28.9
Nitab4.5_0003540g0120 Nicotiana tabacum HOM05D001340 ORTHO05D002318 7.9e-07 59.3 288 28.1
Potri.008G106200 Populus trichocarpa HOM05D001340 ORTHO05D002318 7.9e-07 59.3 197 29.9
Migut.D00076 Erythranthe guttata HOM05D001340 ORTHO05D002318 1.0e-06 58.9 225 27.6
AUR62011794 Chenopodium quinoa HOM05D001340 ORTHO05D002318 1.3e-06 58.5 124 34.7
AL4G46910 Arabidopsis lyrata HOM05D001340 ORTHO05D002318 1.8e-06 58.2 286 25.9
BraA05t19053Z Brassica rapa HOM05D001340 ORTHO05D002318 1.8e-06 58.2 285 28.4
Oeu018082.1 Olea europaea HOM05D001340 ORTHO05D002318 2.3e-06 57.8 326 24.5
Sc17g0000430 Simmondsia chinensis HOM05D001340 ORTHO05D002318 3.0e-06 57.4 196 29.1
SGA_v2.0_scaffold376G50288 Striga asiatica HOM05D001340 ORTHO05D002318 3.0e-06 57.4 148 35.8
BolC4t21693H Brassica oleracea HOM05D001340 ORTHO05D002318 3.9e-06 57.0 263 27.0
Ciclev10004963m.g Citrus clementina HOM05D001340 ORTHO05D002318 3.9e-06 57.0 216 32.4
Solyc01g079350.3 Solanum lycopersicum HOM05D001340 ORTHO05D002318 3.9e-06 57.0 291 27.8
A05p00550 Brassica napus HOM05D001340 ORTHO05D002318 5.1e-06 56.6 278 27.3
CANSAT78G2492 Cannabis sativa HOM05D001340 ORTHO05D002318 5.1e-06 56.6 269 26.8


User provided reference genes

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