Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015957 Vanilla planifolia HOM05D007226 ORTHO05D009160 9.6e-28 125.9 57 100.0
HPP92_015945 Vanilla planifolia HOM05D007226 ORTHO05D009160 1.8e-26 121.7 57 96.5
HPP92_015909 Vanilla planifolia HOM05D001129 ORTHO05D003157 1.7e-08 62.0 27 100.0
Lj2C351T11 Lonicera japonica HOM05D007226 ORTHO05D009160 2.2e-08 61.6 55 52.7
ATR0763G163 Amborella trichopoda HOM05D007226 ORTHO05D009160 8.5e-08 59.7 55 49.1
Lsat_1_v5_gn_2_62900 Lactuca sativa HOM05D007226 ORTHO05D009160 8.5e-08 59.7 42 59.5
Psat7g130920 Pisum sativum HOM05D007226 ORTHO05D009160 8.5e-08 59.7 62 50.0
SGA_v2.0_scaffold175G39365 Striga asiatica HOM05D007226 ORTHO05D009160 8.5e-08 59.7 42 57.1
PGSC0003DMG400010353 Solanum tuberosum HOM05D007226 ORTHO05D009160 1.1e-07 59.3 42 57.1
CiPaw.09G078000 Carya illinoinensis HOM05D007226 ORTHO05D009160 1.4e-07 58.9 41 56.1
Ca_18766_v3 Cicer arietinum L. HOM05D007226 ORTHO05D009160 1.4e-07 58.9 41 56.1
Dinv05963 Davidia involucrata HOM05D007226 ORTHO05D009160 1.4e-07 58.9 42 57.1
Lalb_Chr05g0219731 Lupinus albus HOM05D007226 ORTHO05D009160 1.4e-07 58.9 41 58.5
Medtr4g083990 Medicago truncatula HOM05D007226 ORTHO05D009160 1.4e-07 58.9 41 56.1
Nitab4.5_0003773g0030 Nicotiana tabacum HOM05D007226 ORTHO05D009160 1.4e-07 58.9 42 59.5
Peaxi162Scf00149g00723 Petunia axillaris HOM05D007226 ORTHO05D009160 1.4e-07 58.9 42 54.8
TPR.G20974 Trifolium pratense HOM05D007226 ORTHO05D009160 1.4e-07 58.9 41 56.1
DCAR_004326 Daucus carota HOM05D007226 ORTHO05D009160 1.9e-07 58.5 42 54.8
Gohir.A06G141000 Gossypium hirsutum HOM05D007226 ORTHO05D009160 1.9e-07 58.5 41 61.0
Gohir.D06G145000 Gossypium hirsutum HOM05D007226 ORTHO05D009160 1.9e-07 58.5 41 61.0
Gorai.010G168700 Gossypium raimondii HOM05D007226 ORTHO05D009160 1.9e-07 58.5 41 61.0
PGR004G0179 Punica granatum HOM05D007226 ORTHO05D009160 1.9e-07 58.5 42 57.1
GSVIVG01012076001 Vitis vinifera HOM05D007226 ORTHO05D009160 1.9e-07 58.5 42 54.8
Sopen02g018030 Solanum pennellii HOM05D007226 ORTHO05D009160 2.5e-07 58.2 42 54.8
arahy.Tifrunner.gnm1.ann1.8FEK6M Arachis hypogaea HOM05D007226 ORTHO05D009160 3.2e-07 57.8 41 56.1
arahy.Tifrunner.gnm1.ann1.X3ZR55 Arachis hypogaea HOM05D007226 ORTHO05D009160 3.2e-07 57.8 41 56.1
ECA238G0615 Erigeron canadensis HOM05D007226 ORTHO05D009160 3.2e-07 57.8 42 59.5
Migut.M01975 Erythranthe guttata HOM05D007226 ORTHO05D009160 3.2e-07 57.8 41 56.1
HanXRQChr14g0447221 Helianthus annuus HOM05D007226 ORTHO05D009160 3.2e-07 57.8 42 59.5
QL11p017833 Quercus lobata HOM05D007226 ORTHO05D009160 3.2e-07 57.8 41 56.1
Rhsim02G0212700 Rhododendron simsii HOM05D007226 ORTHO05D009160 3.2e-07 57.8 41 58.5
Oeu056023.2 Olea europaea HOM05D007226 ORTHO05D009160 4.2e-07 57.4 42 54.8
VMungo0251G0617 Vigna mungo HOM05D007226 ORTHO05D009160 4.2e-07 57.4 41 56.1
Actinidia22392 Actinidia chinensis HOM05D007226 ORTHO05D009160 5.5e-07 57.0 42 52.4
SEGI_36655 Sequoiadendron giganteum HOM05D007226 ORTHO05D009160 5.5e-07 57.0 42 57.1
Atru.chr10.515 Acer truncatum HOM05D007226 ORTHO05D009160 7.2e-07 56.6 41 53.7
AL8G14200 Arabidopsis lyrata HOM05D007226 ORTHO05D009160 7.2e-07 56.6 41 56.1
AL8G14380 Arabidopsis lyrata HOM05D007226 ORTHO05D009160 7.2e-07 56.6 41 56.1
AT5G45040 Arabidopsis thaliana HOM05D007226 ORTHO05D009160 7.2e-07 56.6 41 56.1
FvH4_3g12220 Fragaria vesca HOM05D007226 ORTHO05D009160 7.2e-07 56.6 41 53.7
FAN21G0149 Fragaria x ananassa HOM05D007226 ORTHO05D009160 7.2e-07 56.6 41 53.7
RcHm_v2.0_Chr5g0020011 Rosa chinensis HOM05D007226 ORTHO05D009160 7.2e-07 56.6 41 53.7
Sabra15G0137600 Salix brachista HOM05D007226 ORTHO05D009160 7.2e-07 56.6 41 56.1
Potri.015G121101 Populus trichocarpa HOM05D007226 ORTHO05D009160 9.4e-07 56.2 41 56.1
Cfa000717 Carpinus fangiana HOM05D007226 ORTHO05D009160 1.2e-06 55.8 41 53.7
Thecc.06G141800 Theobroma cacao HOM05D007226 ORTHO05D009160 1.2e-06 55.8 41 53.7
Aa31LG9G8170 Aethionema arabicum HOM05D007226 ORTHO05D009160 1.6e-06 55.5 40 57.5
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 1.6e-06 55.5 41 56.1
BcaB07g30483 Brassica carinata HOM05D007226 ORTHO05D009160 1.6e-06 55.5 40 55.0
CAN.G149.55 Capsicum annuum HOM05D007226 ORTHO05D009160 1.6e-06 55.5 42 52.4
Ciclev10017084m.g Citrus clementina HOM05D007226 ORTHO05D009160 1.6e-06 55.5 42 50.0
Eucgr.E01876 Eucalyptus grandis HOM05D007226 ORTHO05D009160 1.6e-06 55.5 42 54.8
MD05G1252700 Malus domestica HOM05D007226 ORTHO05D009160 1.6e-06 55.5 41 53.7
Solyc02g068930.4 Solanum lycopersicum HOM05D007226 ORTHO05D009160 1.6e-06 55.5 42 52.4
CARHR177680 Cardamine hirsuta HOM05D007226 ORTHO05D009160 2.1e-06 55.1 40 55.0
Cc09_g06180 Coffea canephora HOM05D007226 ORTHO05D009160 2.1e-06 55.1 42 52.4
Thhalv10001050m.g Eutrema salsugineum HOM05D007226 ORTHO05D009160 2.1e-06 55.1 40 55.0
FAN25G1348 Fragaria x ananassa HOM05D007226 ORTHO05D009160 2.1e-06 55.1 41 51.2
Manes.16G056825 Manihot esculenta HOM05D007226 ORTHO05D009160 2.1e-06 55.1 42 54.8
COL.COLO4_30987 Corchorus olitorius HOM05D007226 ORTHO05D009160 2.7e-06 54.7 41 56.1
PSO675G1576 Papaver somniferum HOM05D007226 ORTHO05D009160 2.7e-06 54.7 42 52.4
SalBow6G7060 Salvia bowleyana HOM05D007226 ORTHO05D009160 2.7e-06 54.7 40 52.5
SalBow8G0530 Salvia bowleyana HOM05D007226 ORTHO05D009160 2.7e-06 54.7 40 52.5
CDE02G1897 Ceratophyllum demersum HOM05D007226 ORTHO05D009160 3.6e-06 54.3 42 57.1
CDE06G2689 Ceratophyllum demersum HOM05D007226 ORTHO05D009160 3.6e-06 54.3 42 57.1
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.6e-06 54.3 58 44.8
ClCG01G025800 Citrullus lanatus HOM05D007226 ORTHO05D009160 3.6e-06 54.3 40 57.5
MELO3C007008.2 Cucumis melo HOM05D007226 ORTHO05D009160 3.6e-06 54.3 40 57.5
Duzib192G0307 Durio zibethinus HOM05D007226 ORTHO05D009160 3.6e-06 54.3 41 53.7
Phvul.002G098700 Phaseolus vulgaris HOM05D007226 ORTHO05D009160 3.6e-06 54.3 41 53.7
Prupe.4G111200 Prunus persica HOM05D007226 ORTHO05D009160 3.6e-06 54.3 41 51.2
TAR371G1071 Trochodendron aralioides HOM05D007226 ORTHO05D009160 3.6e-06 54.3 36 61.1
CSS0023119 Camellia sinensis var. sinensis HOM05D007226 ORTHO05D009160 4.7e-06 53.9 42 50.0
BcaC03g16718 Brassica carinata HOM05D007226 ORTHO05D009160 6.1e-06 53.5 40 52.5
A02p28790 Brassica napus HOM05D007226 ORTHO05D009160 6.1e-06 53.5 40 52.5
C02p45640 Brassica napus HOM05D007226 ORTHO05D009160 6.1e-06 53.5 40 52.5
C02p45740 Brassica napus HOM05D007226 ORTHO05D009160 6.1e-06 53.5 40 52.5
BolC2t10627H Brassica oleracea HOM05D007226 ORTHO05D009160 6.1e-06 53.5 40 52.5
BolC2t10635H Brassica oleracea HOM05D007226 ORTHO05D009160 6.1e-06 53.5 40 52.5
BraA02t07911Z Brassica rapa HOM05D007226 ORTHO05D009160 6.1e-06 53.5 40 52.5
Carub.0008s0327 Capsella rubella HOM05D007226 ORTHO05D009160 6.1e-06 53.5 40 52.5
Aqoxy1G01459 Aquilegia oxysepala HOM05D007226 ORTHO05D009160 7.9e-06 53.1 41 53.7
Lj4g0002757 Lotus japonicus HOM05D007226 ORTHO05D009160 7.9e-06 53.1 41 53.7


User provided reference genes

Program Settings