Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 0.0e+00 1214.9 609 100.0
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.8e-201 706.4 495 71.3
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 1.4e-196 690.3 498 70.1
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.7e-194 683.3 493 70.2
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 6.4e-194 681.4 494 68.8
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.6e-192 676.8 486 69.3
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 2.3e-191 672.9 489 68.3
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.3e-191 672.9 489 68.9
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 5.0e-191 671.8 492 68.3
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.6e-189 666.8 486 68.5
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 2.8e-189 666.0 490 68.6
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 4.7e-189 665.2 486 68.3
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 8.0e-189 664.5 489 69.5
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 8.9e-188 661.0 492 66.7
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.5e-187 660.2 486 68.5
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.0e-187 659.8 497 66.2
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 2.6e-187 659.4 484 68.2
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 5.8e-187 658.3 486 68.5
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 9.8e-187 657.5 486 67.1
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 9.8e-187 657.5 511 65.2
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.9e-186 656.0 498 67.1
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 3.7e-186 655.6 495 67.9
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.7e-186 655.6 489 67.9
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 1.1e-185 654.1 489 67.1
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 1.9e-185 653.3 489 65.6
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.9e-185 653.3 483 67.7
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.4e-185 652.9 489 66.5
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 2.4e-185 652.9 486 67.3
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.2e-185 652.5 489 66.7
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 3.2e-185 652.5 491 66.8
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.4e-185 651.7 483 67.7
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.4e-185 651.7 483 67.7
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 7.0e-185 651.4 489 66.5
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 7.0e-185 651.4 570 60.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 9.2e-185 651.0 488 67.0
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.2e-184 650.6 495 65.9
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.6e-184 650.2 496 65.3
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.0e-184 649.8 498 65.3
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.7e-184 649.4 489 66.5
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.6e-184 648.7 489 66.1
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 6.0e-184 648.3 493 65.5
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.0e-184 648.3 481 67.6
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 6.0e-184 648.3 489 66.5
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.3e-183 647.1 490 65.9
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.7e-183 646.7 486 66.0
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.3e-183 646.4 489 66.1
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.3e-183 646.4 489 66.1
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 3.0e-183 646.0 496 66.9
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.0e-183 646.0 491 66.6
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.0e-183 645.2 486 67.1
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 6.6e-183 644.8 483 65.8
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 6.6e-183 644.8 483 66.9
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.5e-182 643.7 482 66.4
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.5e-182 643.7 490 67.3
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 1.5e-182 643.7 494 65.8
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.5e-182 643.7 498 66.5
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.9e-182 643.3 482 66.8
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.5e-182 642.9 493 65.5
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 5.6e-182 641.7 486 66.3
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 7.3e-182 641.3 482 66.4
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 9.5e-182 641.0 483 66.3
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.8e-181 639.4 486 66.0
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 3.6e-181 639.0 482 66.6
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 4.7e-181 638.6 492 65.0
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 4.7e-181 638.6 486 65.2
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 4.7e-181 638.6 492 65.9
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 6.2e-181 638.3 482 66.6
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 6.2e-181 638.3 492 65.0
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 6.2e-181 638.3 492 65.0
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 6.2e-181 638.3 489 65.8
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 8.1e-181 637.9 502 64.7
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 8.1e-181 637.9 486 66.5
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.4e-180 637.1 491 66.0
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.3e-180 636.3 483 65.8
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 4.0e-180 635.6 494 65.2
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 4.0e-180 635.6 486 65.6
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 6.8e-180 634.8 491 64.8
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 6.8e-180 634.8 491 64.8
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 8.9e-180 634.4 482 65.4
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.2e-179 634.0 483 66.0
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.2e-179 634.0 483 66.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.5e-179 633.6 536 61.0
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 2.0e-179 633.3 501 64.3
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.0e-179 633.3 482 65.4
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.6e-179 632.9 492 65.4
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.6e-179 632.9 492 65.4
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.6e-179 632.9 482 65.6
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 4.4e-179 632.1 484 64.0
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 4.4e-179 632.1 482 64.7
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 4.4e-179 632.1 488 66.8
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.3e-178 630.6 482 66.0
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.3e-178 630.6 489 65.0
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.7e-178 630.2 493 65.1
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.7e-178 630.2 486 65.2
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 8.3e-178 627.9 482 65.4
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 8.3e-178 627.9 490 62.0
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.1e-177 627.5 493 63.9
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.4e-177 627.1 491 64.8
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 9.2e-177 624.4 486 64.2
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.2e-176 624.0 482 64.5
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 2.1e-176 623.2 521 62.0
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 7.8e-176 621.3 494 64.4
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.7e-175 620.2 494 64.2
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.5e-174 617.1 499 63.5
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.5e-174 617.1 492 63.0
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 5.6e-174 615.1 494 63.4
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 4.7e-173 612.1 505 61.8
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 4.0e-172 609.0 525 61.0
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 3.8e-170 602.4 486 62.8
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.1e-169 600.9 502 63.1
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 4.1e-169 599.0 509 61.1
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 9.2e-169 597.8 456 64.9
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.3e-167 594.0 577 54.8
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.1e-164 584.3 486 61.7
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 3.1e-164 582.8 494 62.3
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.0e-163 580.1 489 61.6
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 9.3e-161 571.2 570 55.6
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 8.7e-159 564.7 524 59.0
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.5e-158 563.1 498 60.2
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 6.2e-157 558.5 485 59.2
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 8.1e-157 558.1 461 61.2
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 5.3e-156 555.4 484 62.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 9.0e-156 554.7 436 64.4
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.5e-155 553.9 505 56.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.5e-155 553.9 459 59.7
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.3e-151 540.8 395 69.9
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 6.2e-149 531.9 491 56.0
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.7e-146 523.9 496 57.7
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.1e-140 504.6 395 65.6
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 2.3e-135 486.9 379 66.2
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.8e-133 479.9 399 64.2
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.1e-132 476.5 365 67.7
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-130 471.5 391 65.5
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 4.8e-125 452.6 465 51.6
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 8.2e-125 451.8 541 48.2
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.9e-122 443.4 345 64.9
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 5.0e-122 442.6 352 63.6
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.7e-120 436.8 361 63.2
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 2.2e-114 417.2 359 61.0
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.4e-105 385.2 399 54.6
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.8e-103 378.6 282 67.0
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.8e-101 372.9 300 63.0
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.3e-98 364.8 277 67.9
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 6.5e-98 362.5 307 61.6
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-93 347.4 274 65.3
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.2e-80 305.1 480 39.0
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 5.4e-76 289.7 235 63.4
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.4e-69 266.2 171 74.3
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 3.5e-67 260.4 252 56.7
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.1e-65 255.4 207 66.2
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.5e-65 254.2 187 67.4
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 1.2e-56 225.3 200 58.0
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 8.1e-48 196.1 148 65.5
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 3.1e-47 194.1 130 70.8
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 8.4e-45 186.0 148 64.2
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 3.2e-44 184.1 130 70.8
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 6.0e-43 179.9 235 45.5
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 8.7e-42 176.0 259 40.9
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 5.6e-41 173.3 129 64.3
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.3e-40 172.2 114 71.1
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.0e-34 152.5 114 64.0
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.0e-34 152.5 206 45.6
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.3e-34 151.4 265 41.1
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.5e-33 148.7 136 59.6
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 6.0e-27 126.7 93 59.1
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 6.0e-27 126.7 93 59.1
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 1.1e-20 105.9 92 64.1
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 7.1e-20 103.2 63 76.2
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 9.3e-20 102.8 67 74.6
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 4.6e-19 100.5 63 74.6
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.6e-19 100.5 65 81.5
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 6.7e-18 96.7 60 73.3
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.3e-17 94.0 65 75.4
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.6e-16 92.0 192 35.4
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 3.7e-16 90.9 65 63.1
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.7e-16 90.9 65 72.3
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.1e-15 89.4 65 70.8
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 5.0e-13 80.5 96 43.8
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.1e-12 79.3 77 59.7
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 6.9e-07 60.1 46 54.3
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 3.4e-06 57.8 36 66.7


User provided reference genes

Program Settings