Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 3.9e-57 224.6 112 100.0
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 2.0e-53 212.2 110 95.5
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 9.1e-14 80.5 56 69.6
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.6e-13 79.7 55 67.3
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 2.0e-13 79.3 55 67.3
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 3.5e-13 78.6 42 83.3
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 5.9e-13 77.8 40 87.5
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 5.9e-13 77.8 40 87.5
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 5.9e-13 77.8 40 87.5
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 5.9e-13 77.8 57 64.9
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 7.7e-13 77.4 40 85.0
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 1.0e-12 77.0 40 82.5
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 1.7e-12 76.3 40 85.0
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 2.2e-12 75.9 54 63.0
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 3.8e-12 75.1 86 50.0
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 3.8e-12 75.1 40 80.0
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 3.8e-12 75.1 40 80.0
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 3.8e-12 75.1 40 80.0
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 3.8e-12 75.1 46 73.9
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 5.0e-12 74.7 41 75.6
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 5.0e-12 74.7 41 78.0
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 5.0e-12 74.7 40 80.0
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 8.5e-12 73.9 40 77.5
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 8.5e-12 73.9 42 73.8
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 1.1e-11 73.6 40 80.0
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 1.1e-11 73.6 40 82.5
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 1.1e-11 73.6 40 77.5
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 1.1e-11 73.6 40 77.5
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 1.5e-11 73.2 44 70.5
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 1.5e-11 73.2 40 77.5
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 1.5e-11 73.2 40 80.0
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 1.9e-11 72.8 40 80.0
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 1.9e-11 72.8 40 80.0
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 2.5e-11 72.4 40 80.0
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 2.5e-11 72.4 40 77.5
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 3.2e-11 72.0 40 77.5
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 3.2e-11 72.0 40 77.5
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 3.2e-11 72.0 40 77.5
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 4.2e-11 71.6 40 72.5
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 4.2e-11 71.6 40 72.5
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 4.2e-11 71.6 40 72.5
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 4.2e-11 71.6 40 72.5
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 4.2e-11 71.6 40 72.5
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 4.2e-11 71.6 40 72.5
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 5.5e-11 71.2 40 77.5
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 5.5e-11 71.2 40 77.5
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 5.5e-11 71.2 43 67.4
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 7.2e-11 70.9 40 77.5
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 7.2e-11 70.9 48 62.5
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 7.2e-11 70.9 40 75.0
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 9.4e-11 70.5 40 72.5
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 9.4e-11 70.5 45 66.7
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.2e-10 70.1 40 75.0
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.2e-10 70.1 40 75.0
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 1.2e-10 70.1 40 75.0
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.2e-10 70.1 48 60.4
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 1.2e-10 70.1 60 55.0
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 1.2e-10 70.1 42 73.8
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 1.6e-10 69.7 39 74.4
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 1.6e-10 69.7 40 72.5
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 1.6e-10 69.7 40 72.5
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 2.1e-10 69.3 52 55.8
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 2.1e-10 69.3 40 70.0
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 2.7e-10 68.9 44 63.6
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 3.6e-10 68.6 40 67.5
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 4.7e-10 68.2 40 70.0
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 6.1e-10 67.8 47 59.6
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 8.0e-10 67.4 40 70.0
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 8.0e-10 67.4 40 70.0
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 8.0e-10 67.4 40 70.0
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 1.0e-09 67.0 40 67.5
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 1.0e-09 67.0 40 67.5
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 1.0e-09 67.0 40 67.5
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 1.0e-09 67.0 40 70.0
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 1.4e-09 66.6 40 65.0
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 1.4e-09 66.6 40 67.5
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 1.4e-09 66.6 40 72.5
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 1.8e-09 66.2 40 70.0
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 2.3e-09 65.9 52 53.8
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 2.3e-09 65.9 40 70.0
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 2.3e-09 65.9 47 57.4
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 3.0e-09 65.5 40 67.5
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 3.0e-09 65.5 40 67.5
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 3.0e-09 65.5 40 67.5
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 4.0e-09 65.1 40 65.0
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 8.8e-09 63.9 40 67.5
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 2.0e-08 62.8 33 87.9
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 9.8e-08 60.5 33 75.8
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 2.8e-07 58.9 33 72.7
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 1.8e-06 56.2 33 69.7
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 9.1e-06 53.9 36 75.0


User provided reference genes

Program Settings