Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015819 Vanilla planifolia HOM05D000023 ORTHO05D028692 8.8e-48 194.1 175 100.0
Actinidia21899 Actinidia chinensis HOM05D000023 ORTHO05D000014 6.6e-19 98.2 76 60.5
CSS0044302 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.5e-18 97.1 77 58.4
Nitab4.5_0000261g0080 Nicotiana tabacum HOM05D000023 ORTHO05D000014 5.6e-18 95.1 77 57.1
Nitab4.5_0007485g0010 Nicotiana tabacum HOM05D000023 ORTHO05D000014 5.6e-18 95.1 77 57.1
Sopen00g013210 Solanum pennellii HOM05D000023 ORTHO05D000014 1.6e-17 93.6 76 55.3
Solyc09g005660.4 Solanum lycopersicum HOM05D000023 ORTHO05D000014 3.6e-17 92.4 76 53.9
Peaxi162Scf00890g00014 Petunia axillaris HOM05D000023 ORTHO05D000014 8.1e-17 91.3 77 53.2
PGSC0003DMG400004456 Solanum tuberosum HOM05D000023 ORTHO05D000014 8.1e-17 91.3 76 53.9
Nn8g41271 Nelumbo nucifera HOM05D000023 ORTHO05D000014 1.1e-16 90.9 76 53.9
Rhsim08G0252000 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.8e-16 90.1 79 57.0
AUR62007190 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.3e-16 89.7 77 53.2
Atru.chr3.4094 Acer truncatum HOM05D000023 ORTHO05D000014 3.1e-16 89.4 77 51.9
AUR62018814 Chenopodium quinoa HOM05D000023 ORTHO05D000014 3.1e-16 89.4 77 51.9
QL09p040424 Quercus lobata HOM05D000023 ORTHO05D000014 4.0e-16 89.0 76 57.9
Sabra07G0002400 Salix brachista HOM05D000023 ORTHO05D000014 1.5e-15 87.0 78 50.0
Aqoxy7G02565 Aquilegia oxysepala HOM05D000023 ORTHO05D000014 2.6e-15 86.3 75 52.0
MBI11_g09072_MAGBIO Magnolia biondii HOM05D017755 ORTHO05D022892 9.9e-15 84.3 77 50.6
Ah.12g053880 Amaranthus hybridus HOM05D000023 ORTHO05D000014 1.3e-14 84.0 81 46.9
Cc11_g02970 Coffea canephora HOM05D000023 ORTHO05D000014 2.2e-14 83.2 77 48.1
Hund11308 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.2e-14 83.2 77 51.9
vmacro18724 Vaccinium macrocarpon HOM05D000023 ORTHO05D000014 2.2e-14 83.2 77 54.5
TWI12G1209 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 4.9e-14 82.0 76 51.3
PSO541G3670 Papaver somniferum HOM05D000023 ORTHO05D000014 5.4e-13 78.6 77 46.8
PSO541G0103 Papaver somniferum HOM05D000023 ORTHO05D000014 9.2e-13 77.8 57 59.6
PSO675G7568 Papaver somniferum HOM05D000023 ORTHO05D000014 9.2e-13 77.8 57 59.6
EL10Ac5g12240 Beta vulgaris HOM05D000023 ORTHO05D000014 7.8e-12 74.7 77 45.5
CDE05G2095 Ceratophyllum demersum HOM05D017755 ORTHO05D028692 1.3e-11 73.9 62 51.6
Duzib235G1361 Durio zibethinus HOM05D000023 ORTHO05D000014 1.7e-11 73.6 77 48.1
Atru.chr6.1787 Acer truncatum HOM05D000023 ORTHO05D000014 3.0e-11 72.8 77 44.2
Cc11_g02880 Coffea canephora HOM05D000023 ORTHO05D000014 1.1e-10 70.9 80 40.0
A01p40490 Brassica napus HOM05D000023 ORTHO05D000014 2.5e-10 69.7 56 53.6
THA.LOC104804851 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 2.5e-10 69.7 55 54.5
THA.LOC104804854 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 2.5e-10 69.7 54 53.7
THA.LOC104822746 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 2.5e-10 69.7 54 53.7
AT3G13020 Arabidopsis thaliana HOM05D000023 ORTHO05D000014 3.3e-10 69.3 56 51.8
BraA01t04084Z Brassica rapa HOM05D000023 ORTHO05D000014 7.3e-10 68.2 56 53.6
PGR102G0634 Punica granatum HOM05D000023 ORTHO05D000014 7.3e-10 68.2 78 46.2
RcHm_v2.0_Chr2g0148401 Rosa chinensis HOM05D000023 ORTHO05D000014 1.2e-09 67.4 60 48.3
AL3G24730 Arabidopsis lyrata HOM05D000023 ORTHO05D000014 1.6e-09 67.0 56 50.0
BcaC09g48290 Brassica carinata HOM05D000023 ORTHO05D000014 2.1e-09 66.6 56 53.6
BolC1t05151H Brassica oleracea HOM05D000023 ORTHO05D000014 2.1e-09 66.6 56 53.6
BcaB04g21035 Brassica carinata HOM05D000023 ORTHO05D000014 2.8e-09 66.2 65 46.2
BcaB04g21033 Brassica carinata HOM05D000023 ORTHO05D000014 3.6e-09 65.9 55 49.1
PSO063G3518 Papaver somniferum HOM05D000023 ORTHO05D000014 3.6e-09 65.9 77 44.2
PSO478G3641 Papaver somniferum HOM05D000023 ORTHO05D000014 4.7e-09 65.5 67 43.3
PSO017G0301 Papaver somniferum HOM05D000023 ORTHO05D000014 6.2e-09 65.1 49 51.0
PSO407G0285 Papaver somniferum HOM05D000023 ORTHO05D000014 6.2e-09 65.1 56 48.2
PSO407G0009 Papaver somniferum HOM05D000023 ORTHO05D000014 8.1e-09 64.7 80 38.8
PSO170G4291 Papaver somniferum HOM05D017755 ORTHO05D022892 1.1e-08 64.3 52 51.9
ATR0626G282 Amborella trichopoda HOM05D000023 ORTHO05D000014 3.1e-08 62.8 59 47.5
CiPaw.11G064600 Carya illinoinensis HOM05D000023 ORTHO05D000014 3.1e-08 62.8 61 47.5
Eucgr.F04058 Eucalyptus grandis HOM05D000023 ORTHO05D000014 3.1e-08 62.8 75 44.0
CiPaw.13G120100 Carya illinoinensis HOM05D000023 ORTHO05D000014 4.0e-08 62.4 61 47.5
CSS0021036 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 5.2e-08 62.0 76 43.4
CiPaw.01G093600 Carya illinoinensis HOM05D000023 ORTHO05D000014 5.2e-08 62.0 57 50.9
CiPaw.07G082500 Carya illinoinensis HOM05D000023 ORTHO05D000014 5.2e-08 62.0 57 50.9
PSO170G2664 Papaver somniferum HOM05D000023 ORTHO05D000014 5.2e-08 62.0 57 45.6
TWI38G0509 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 5.2e-08 62.0 45 55.6
PSO170G6495 Papaver somniferum HOM05D000023 ORTHO05D000014 6.8e-08 61.6 67 41.8
Aa31LG8G250 Aethionema arabicum HOM05D000023 ORTHO05D000014 8.9e-08 61.2 57 43.9
CiPaw.07G170200 Carya illinoinensis HOM05D000023 ORTHO05D000014 8.9e-08 61.2 57 49.1
CiPaw.05G046600 Carya illinoinensis HOM05D000023 ORTHO05D000014 1.2e-07 60.8 57 50.9
PSO170G2136 Papaver somniferum HOM05D000023 ORTHO05D000014 1.2e-07 60.8 67 40.3
Sabra09G0122200 Salix brachista HOM05D000023 ORTHO05D000014 1.2e-07 60.8 64 45.3
PSO063G0427 Papaver somniferum HOM05D000023 ORTHO05D000014 1.5e-07 60.5 67 40.3
CiPaw.03G191500 Carya illinoinensis HOM05D000023 ORTHO05D000014 2.6e-07 59.7 57 49.1
TWI39G0735 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 2.6e-07 59.7 56 44.6
BolC1t05154H Brassica oleracea HOM05D000023 ORTHO05D000014 3.4e-07 59.3 50 46.0
CiPaw.07G111600 Carya illinoinensis HOM05D000023 ORTHO05D000014 3.4e-07 59.3 57 49.1
COL.COLO4_26818 Corchorus olitorius HOM05D000023 ORTHO05D000014 4.4e-07 58.9 54 53.7
PGR102G0491 Punica granatum HOM05D000023 ORTHO05D000014 4.4e-07 58.9 54 48.1
PSO063G3821 Papaver somniferum HOM05D000023 ORTHO05D000014 5.8e-07 58.5 54 46.3
C01p52150 Brassica napus HOM05D000023 ORTHO05D000014 7.6e-07 58.2 50 44.0
FvH4_6g36423 Fragaria vesca HOM05D051670 ORTHO05D028692 9.9e-07 57.8 60 46.7
PSO170G3150 Papaver somniferum HOM05D000023 ORTHO05D000014 9.9e-07 57.8 54 46.3
Sp3g11170 Schrenkiella parvula HOM05D000023 ORTHO05D000014 1.3e-06 57.4 54 42.6
C01p46790 Brassica napus HOM05D000023 ORTHO05D000014 1.7e-06 57.0 65 43.1
BolC1t04652H Brassica oleracea HOM05D000023 ORTHO05D000014 1.7e-06 57.0 65 43.1
TWI39G0587 Tripterygium wilfordii HOM05D017755 ORTHO05D022892 2.2e-06 56.6 45 46.7
FAN14G0039 Fragaria x ananassa HOM05D051670 ORTHO05D028692 2.9e-06 56.2 60 45.0
BraA01t04086Z Brassica rapa HOM05D000023 ORTHO05D000014 3.8e-06 55.8 53 43.4
EL10Ac5g11764 Beta vulgaris HOM05D000023 ORTHO05D000014 4.9e-06 55.5 63 42.9
A01p36900 Brassica napus HOM05D000023 ORTHO05D000014 4.9e-06 55.5 61 44.3
BraA01t03749Z Brassica rapa HOM05D000023 ORTHO05D000014 4.9e-06 55.5 61 44.3
arahy.Tifrunner.gnm1.ann1.LM67GB Arachis hypogaea HOM05D000023 ORTHO05D000014 6.4e-06 55.1 59 40.7
BcaB06g25493 Brassica carinata HOM05D000023 ORTHO05D000014 8.4e-06 54.7 70 35.7
CiPaw.05G123500 Carya illinoinensis HOM05D000023 ORTHO05D000014 8.4e-06 54.7 63 46.0


User provided reference genes

Program Settings