Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015795 Vanilla planifolia HOM05D005244 ORTHO05D006539 0.0e+00 1404.0 707 100.0
HPP92_015784 Vanilla planifolia HOM05D005244 ORTHO05D006539 0.0e+00 1254.6 761 86.3
HPP92_015814 Vanilla planifolia HOM05D005244 ORTHO05D006539 3.8e-267 924.9 596 83.1
Nn8g41249 Nelumbo nucifera HOM05D005244 ORTHO05D006539 3.6e-265 918.3 764 61.8
Dinv12631 Davidia involucrata HOM05D005244 ORTHO05D006539 2.6e-263 912.1 764 61.3
TAR383G0812 Trochodendron aralioides HOM05D005244 ORTHO05D006539 2.2e-262 909.1 764 61.0
Aqoxy7G02584 Aquilegia oxysepala HOM05D005244 ORTHO05D006539 1.1e-261 906.7 764 61.3
Atru.chr7.1024 Acer truncatum HOM05D005244 ORTHO05D006539 2.9e-259 898.7 764 60.2
MSTRG.26510 Avicennia marina HOM05D005244 ORTHO05D006539 6.5e-259 897.5 766 59.0
MBI16_g40729_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 5.5e-258 894.4 778 59.6
QL11p005809 Quercus lobata HOM05D005244 ORTHO05D006539 7.2e-258 894.0 763 59.2
Potri.018G150600 Populus trichocarpa HOM05D005244 ORTHO05D006539 3.6e-257 891.7 766 59.9
TWI34G0889 Tripterygium wilfordii HOM05D005244 ORTHO05D006539 8.0e-257 890.6 764 60.5
QL11p006533 Quercus lobata HOM05D005244 ORTHO05D006539 1.0e-256 890.2 763 59.0
Thecc.09G197300 Theobroma cacao HOM05D005244 ORTHO05D006539 1.5e-255 886.3 765 59.3
Prupe.1G001000 Prunus persica HOM05D005244 ORTHO05D006539 2.6e-255 885.6 764 58.5
ATR0626G132 Amborella trichopoda HOM05D005244 ORTHO05D006539 5.7e-255 884.4 766 59.7
COL.COLO4_08830 Corchorus olitorius HOM05D005244 ORTHO05D006539 3.7e-254 881.7 785 58.3
Manes.02G225500 Manihot esculenta HOM05D005244 ORTHO05D006539 8.3e-254 880.6 765 59.7
Solyc07g042910.4 Solanum lycopersicum HOM05D005244 ORTHO05D006539 1.1e-253 880.2 766 58.1
Sopen07g022510 Solanum pennellii HOM05D005244 ORTHO05D006539 1.1e-253 880.2 766 58.1
Actinidia02527 Actinidia chinensis HOM05D005244 ORTHO05D006539 2.4e-253 879.0 764 58.2
CAN.G57.4 Capsicum annuum HOM05D005244 ORTHO05D006539 2.4e-253 879.0 766 57.6
CiPaw.07G237900 Carya illinoinensis HOM05D005244 ORTHO05D006539 9.2e-253 877.1 764 58.9
Potri.006G080700 Populus trichocarpa HOM05D005244 ORTHO05D006539 1.2e-252 876.7 765 58.8
PSO170G3502 Papaver somniferum HOM05D005244 ORTHO05D006539 2.0e-252 875.9 764 58.6
CSS0037198 Camellia sinensis var. sinensis HOM05D005244 ORTHO05D006539 3.5e-252 875.2 774 58.3
MD04G1001000 Malus domestica HOM05D005244 ORTHO05D006539 5.9e-252 874.4 764 58.0
Gohir.A08G016900 Gossypium hirsutum HOM05D005244 ORTHO05D006539 1.0e-251 873.6 764 58.6
Gohir.D08G027300 Gossypium hirsutum HOM05D005244 ORTHO05D006539 1.7e-251 872.8 764 58.8
Ciclev10007431m.g Citrus clementina HOM05D005244 ORTHO05D006539 2.3e-251 872.5 764 59.2
PSO063G2947 Papaver somniferum HOM05D005244 ORTHO05D006539 2.3e-251 872.5 764 58.5
Gorai.004G024200 Gossypium raimondii HOM05D005244 ORTHO05D006539 1.1e-250 870.2 764 58.4
Lju50C34G1 Lonicera japonica HOM05D005244 ORTHO05D006539 1.1e-250 870.2 788 57.0
AUR62020750 Chenopodium quinoa HOM05D005244 ORTHO05D006539 2.5e-250 869.0 775 58.1
PGR044G0827 Punica granatum HOM05D005244 ORTHO05D006539 2.1e-249 865.9 764 58.0
Zm00001eb240720 Zea mays HOM05D005244 ORTHO05D006539 1.5e-247 859.8 764 57.7
Nitab4.5_0000807g0220 Nicotiana tabacum HOM05D005244 ORTHO05D006539 4.4e-247 858.2 745 58.7
Eucgr.C02153 Eucalyptus grandis HOM05D005244 ORTHO05D006539 5.7e-247 857.8 764 57.7
arahy.Tifrunner.gnm1.ann1.MPB88K Arachis hypogaea HOM05D005244 ORTHO05D006539 7.5e-247 857.4 765 57.8
Lsat_1_v5_gn_5_80020 Lactuca sativa HOM05D005244 ORTHO05D006539 3.7e-246 855.1 765 57.5
MELO3C010012.2 Cucumis melo HOM05D005244 ORTHO05D006539 1.4e-245 853.2 761 57.3
Hund03212 Selenicereus undatus HOM05D005244 ORTHO05D006539 5.4e-245 851.3 799 55.6
SGA_v2.0_scaffold21G09589 Striga asiatica HOM05D005244 ORTHO05D006539 7.0e-245 850.9 764 56.9
GSVIVG01034254001 Vitis vinifera HOM05D005244 ORTHO05D006539 1.2e-244 850.1 694 62.5
Nitab4.5_0000170g0280 Nicotiana tabacum HOM05D005244 ORTHO05D006539 1.6e-244 849.7 745 58.5
CANSAT80G0544 Cannabis sativa HOM05D005244 ORTHO05D006539 4.6e-244 848.2 765 57.8
VMungo0464G0587 Vigna mungo HOM05D005244 ORTHO05D006539 1.0e-243 847.0 764 57.1
EL10Ac2g03605 Beta vulgaris HOM05D005244 ORTHO05D006539 1.3e-243 846.7 764 58.4
CDE05G2480 Ceratophyllum demersum HOM05D005244 ORTHO05D006539 1.3e-243 846.7 766 56.4
CsaV3_1G044170 Cucumis sativus L. HOM05D005244 ORTHO05D006539 1.3e-243 846.7 761 57.2
Glyma.08G360000 Glycine max HOM05D005244 ORTHO05D006539 1.7e-243 846.3 764 56.7
ECA234G0362 Erigeron canadensis HOM05D005244 ORTHO05D006539 3.0e-243 845.5 765 57.0
RcHm_v2.0_Chr4g0393651 Rosa chinensis HOM05D005244 ORTHO05D006539 1.9e-242 842.8 767 57.2
AL8G34210 Arabidopsis lyrata HOM05D005244 ORTHO05D006539 3.3e-242 842.0 764 56.2
THA.LOC104817833 Tarenaya hassleriana HOM05D005244 ORTHO05D006539 4.3e-242 841.6 764 57.1
HanXRQChr10g0309401 Helianthus annuus HOM05D005244 ORTHO05D006539 9.5e-242 840.5 766 57.3
Glyma.01G000900 Glycine max HOM05D005244 ORTHO05D006539 1.2e-241 840.1 788 55.7
FvH4_4g03800 Fragaria vesca HOM05D005244 ORTHO05D006539 1.6e-241 839.7 767 57.0
FAN12G3076 Fragaria x ananassa HOM05D005244 ORTHO05D006539 2.8e-241 839.0 767 57.0
FAN12G3464 Fragaria x ananassa HOM05D005244 ORTHO05D006539 2.8e-241 839.0 767 57.0
Sed0018574 Sechium edule HOM05D005244 ORTHO05D006539 2.8e-241 839.0 762 57.2
Medtr5g019500 Medicago truncatula HOM05D005244 ORTHO05D006539 8.0e-241 837.4 765 56.6
AT5G58100 Arabidopsis thaliana HOM05D005244 ORTHO05D006539 1.4e-240 836.6 764 55.8
arahy.Tifrunner.gnm1.ann1.GU0YFX Arachis hypogaea HOM05D005244 ORTHO05D006539 1.4e-240 836.6 798 55.3
FAN22G0231 Fragaria x ananassa HOM05D005244 ORTHO05D006539 1.4e-240 836.6 767 56.8
Sp6g19790 Schrenkiella parvula HOM05D005244 ORTHO05D006539 1.4e-240 836.6 764 56.4
BcaB08g36163 Brassica carinata HOM05D005244 ORTHO05D006539 1.8e-240 836.3 764 56.7
Lj2g0016843 Lotus japonicus HOM05D005244 ORTHO05D006539 2.3e-240 835.9 764 56.8
Migut.L01612 Erythranthe guttata HOM05D005244 ORTHO05D006539 4.0e-240 835.1 848 52.6
TPR.G18623 Trifolium pratense HOM05D005244 ORTHO05D006539 1.2e-239 833.6 749 57.3
Thhalv10012595m.g Eutrema salsugineum HOM05D005244 ORTHO05D006539 4.4e-239 831.6 764 55.8
Carub.0008s1866 Capsella rubella HOM05D005244 ORTHO05D006539 1.1e-237 827.0 764 55.5
Ca_25641_v3 Cicer arietinum L. HOM05D005244 ORTHO05D006539 1.4e-237 826.6 765 56.3
BcaC04g19907 Brassica carinata HOM05D005244 ORTHO05D006539 3.2e-237 825.5 764 55.9
C09p50010 Brassica napus HOM05D005244 ORTHO05D006539 4.1e-237 825.1 764 55.9
Psat1g052040 Pisum sativum HOM05D005244 ORTHO05D006539 2.5e-234 815.8 765 56.2
Cc06_g23580 Coffea canephora HOM05D005244 ORTHO05D006539 1.2e-233 813.5 913 49.5
Duzib168G0486 Durio zibethinus HOM05D005244 ORTHO05D006539 5.2e-232 808.1 743 56.5
vmacro20731 Vaccinium macrocarpon HOM05D005244 ORTHO05D006539 2.6e-231 805.8 907 49.5
BolC9t57854H Brassica oleracea HOM05D005244 ORTHO05D006539 4.4e-231 805.1 803 53.1
Actinidia07539 Actinidia chinensis HOM05D005244 ORTHO05D006539 7.5e-231 804.3 684 60.5
Peaxi162Scf01347g00132 Petunia axillaris HOM05D005244 ORTHO05D006539 2.9e-230 802.4 775 54.1
BraA10t43621Z Brassica rapa HOM05D005244 ORTHO05D006539 1.6e-228 796.6 812 52.3
Oeu021241.1 Olea europaea HOM05D005244 ORTHO05D006539 7.8e-228 794.3 798 53.8
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 2.8e-225 785.8 730 55.2
Sc25g0001730 Simmondsia chinensis HOM05D005244 ORTHO05D006539 3.6e-217 758.8 706 56.8
Rhsim01G0102600 Rhododendron simsii HOM05D005244 ORTHO05D006539 2.9e-214 749.2 843 49.9
DCAR_020446 Daucus carota HOM05D005244 ORTHO05D006539 5.5e-197 691.8 779 49.0
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 1.8e-187 660.2 732 49.7
CARHR271920 Cardamine hirsuta HOM05D005244 ORTHO05D006539 2.5e-186 656.4 555 60.5
A10p16080 Brassica napus HOM05D005244 ORTHO05D006539 1.3e-185 654.1 557 59.8
HPP92_015817 Vanilla planifolia HOM05D005244 ORTHO05D006539 2.2e-185 653.3 606 63.4
Haze_21246 Corylus avellana HOM05D005244 ORTHO05D006539 3.7e-177 625.9 586 56.7
Pp3c14_21030 Physcomitrium patens HOM05D005244 ORTHO05D006539 6.7e-171 605.1 776 43.9
AUR62027963 Chenopodium quinoa HOM05D005244 ORTHO05D006539 1.1e-170 604.4 778 46.3
Mapoly0125s0017 Marchantia polymorpha HOM05D005244 ORTHO05D006539 5.0e-166 589.0 776 42.5
Sed0023758 Sechium edule HOM05D005244 ORTHO05D006539 2.0e-154 550.4 494 57.9
SMO367G0058 Selaginella moellendorffii HOM05D005244 ORTHO05D006539 1.0e-150 538.1 779 39.3
Hund19348 Selenicereus undatus HOM05D005244 ORTHO05D006539 3.1e-144 516.5 768 42.3
Cpa.g.sc91.77 Carica papaya HOM05D005244 ORTHO05D006539 2.7e-135 486.9 433 59.8
ClCG03G011620 Citrullus lanatus HOM05D005244 ORTHO05D006539 7.3e-133 478.8 489 53.4
SEGI_37412 Sequoiadendron giganteum HOM05D005244 ORTHO05D006539 4.2e-104 383.3 391 52.2
CBR_g22899 Chara braunii HOM05D005244 ORTHO05D006539 3.2e-96 357.1 801 32.2
CBR_g983 Chara braunii HOM05D005244 ORTHO05D006539 4.0e-83 313.5 879 28.6
Hma1.2p1_0394F.1_g143220 Hydrangea macrophylla HOM05D005244 ORTHO05D006539 8.4e-81 305.8 201 71.6
SHI03158 Sapria himalayana HOM05D005244 ORTHO05D006539 6.0e-79 299.7 459 41.4
SalBow5G4830 Salvia bowleyana HOM05D005244 ORTHO05D006539 2.5e-77 294.3 270 54.1
Sed0028124 Sechium edule HOM05D005244 ORTHO05D006539 1.3e-76 292.0 270 55.2
ClCG03G011630 Citrullus lanatus HOM05D005244 ORTHO05D006539 6.2e-76 289.7 269 53.2
Os03g0570200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 2.8e-68 264.2 242 57.0
CiPaw.07G231500 Carya illinoinensis HOM05D005244 ORTHO05D006539 5.3e-67 260.0 202 62.9
MCO06G232 Micromonas commoda HOM05D005244 ORTHO05D006539 4.1e-59 233.8 876 27.1
Sed0013671 Sechium edule HOM05D005244 ORTHO05D006539 9.1e-59 232.6 271 48.3
Cpa.g.sc91.76 Carica papaya HOM05D005244 ORTHO05D006539 2.5e-56 224.6 270 45.6
Cre16.g680450 Chlamydomonas reinhardtii HOM05D005244 ORTHO05D006539 5.3e-43 180.3 911 23.5
SalBow7G2907 Salvia bowleyana HOM05D005244 ORTHO05D006539 3.1e-35 154.5 135 54.1
SalBow8G4401 Salvia bowleyana HOM05D005244 ORTHO05D006539 2.0e-34 151.8 135 53.3
SalBow2G0201 Salvia bowleyana HOM05D005244 ORTHO05D006539 2.1e-31 141.7 108 60.2
SalBow6G0925 Salvia bowleyana HOM05D005244 ORTHO05D006539 2.6e-29 134.8 171 42.1
MBI16_g00817_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 4.4e-29 134.0 203 40.4
Lj5g0018939 Lotus japonicus HOM05D005244 ORTHO05D006539 3.1e-27 127.9 201 37.3
Lalb_Chr22g0361681 Lupinus albus HOM05D005244 ORTHO05D006539 2.3e-25 121.7 136 47.1
QL01p000012 Quercus lobata HOM05D005244 ORTHO05D006539 2.3e-22 111.7 137 40.1
Os02g0469200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 6.6e-17 93.6 76 57.9
Cpa.g.sc91.78 Carica papaya HOM05D005244 ORTHO05D006539 8.0e-15 86.7 61 62.3
Duzib170G1117 Durio zibethinus HOM05D005244 ORTHO05D006539 1.3e-12 79.3 64 56.2
Lsat_1_v5_gn_4_83721 Lactuca sativa HOM05D000104 ORTHO05D008354 3.5e-10 71.2 50 74.0
Lsat_1_v5_gn_1_86520 Lactuca sativa HOM05D005244 ORTHO05D029965 7.8e-10 70.1 82 48.8
SHI03161 Sapria himalayana HOM05D005244 ORTHO05D006539 1.0e-09 69.7 76 47.4
Lsat_1_v5_gn_3_57281 Lactuca sativa HOM05D003275 ORTHO05D006539 1.7e-09 68.9 49 73.5
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 3.0e-09 68.2 60 56.7
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 5.0e-09 67.4 59 61.0
RcHm_v2.0_Chr2g0169061 Rosa chinensis HOM05D007118 ORTHO05D008957 3.3e-08 64.7 436 23.2
FAN02G1928 Fragaria x ananassa HOM05D007118 ORTHO05D008957 4.3e-08 64.3 438 22.6
Sc14g0006000 Simmondsia chinensis HOM05D007118 ORTHO05D008957 4.3e-08 64.3 395 21.8
FAN14G3290 Fragaria x ananassa HOM05D007118 ORTHO05D008957 7.3e-08 63.5 405 22.2
FAN05G1119 Fragaria x ananassa HOM05D007118 ORTHO05D008957 9.5e-08 63.2 402 22.1
SMO244G0043 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 2.1e-07 62.0 432 22.0
FvH4_6g49180 Fragaria vesca HOM05D007118 ORTHO05D008957 2.8e-07 61.6 402 22.1
Duzib147G0587 Durio zibethinus HOM05D007118 ORTHO05D008957 3.6e-07 61.2 400 20.2
Peaxi162Scf00129g00042 Petunia axillaris HOM05D007118 ORTHO05D008957 3.6e-07 61.2 474 22.2
Prupe.3G271300 Prunus persica HOM05D007118 ORTHO05D008957 4.7e-07 60.8 395 22.3
CANSAT64G2775 Cannabis sativa HOM05D007118 ORTHO05D008957 8.0e-07 60.1 399 21.6
Lsat_1_v5_gn_2_88681 Lactuca sativa HOM05D007118 ORTHO05D008957 1.1e-06 59.7 396 22.5
AUR62038867 Chenopodium quinoa HOM05D007118 ORTHO05D008957 1.4e-06 59.3 420 22.1
Hund13237 Selenicereus undatus HOM05D007118 ORTHO05D008957 1.4e-06 59.3 412 20.6
Aa31LG2G4490 Aethionema arabicum HOM05D007118 ORTHO05D008957 1.8e-06 58.9 428 23.8
AT3G28720 Arabidopsis thaliana HOM05D007118 ORTHO05D008957 1.8e-06 58.9 399 22.8
Carub.0005s0727 Capsella rubella HOM05D007118 ORTHO05D008957 1.8e-06 58.9 400 22.8
TAR629G0502 Trochodendron aralioides HOM05D007118 ORTHO05D008957 1.8e-06 58.9 400 21.2
unitig_899.g15508 Utricularia gibba HOM05D007118 ORTHO05D008957 2.3e-06 58.5 421 21.9
AagrBONN_evm.TU.Sc2ySwM_344.3877 Anthoceros agrestis HOM05D007118 ORTHO05D008957 3.1e-06 58.2 408 22.8
Ciclev10011233m.g Citrus clementina HOM05D007118 ORTHO05D008957 5.2e-06 57.4 526 20.9
Mapoly0051s0046 Marchantia polymorpha HOM05D007118 ORTHO05D008957 5.2e-06 57.4 467 20.3
THA.LOC104805448 Tarenaya hassleriana HOM05D007118 ORTHO05D008957 6.8e-06 57.0 409 21.5


User provided reference genes

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