Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 94.9
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.1
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.1
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.1
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.1
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 3.7e-42 174.9 118 94.1
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 6.4e-42 174.1 118 93.2
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 92.4
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 93.2
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 93.2
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 94.1
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 94.1
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 92.4
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 92.4
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 1.4e-41 172.9 118 92.4
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 1.4e-41 172.9 118 92.4
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 93.2
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 93.2
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 93.2
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 93.2
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 93.2
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 93.2
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 92.4
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 92.4
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 92.4
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 92.4
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 92.4
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 92.4
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 92.4
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 93.2
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 3.2e-41 171.8 118 93.2
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 3.2e-41 171.8 118 93.2
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 3.2e-41 171.8 118 83.9
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 3.2e-41 171.8 118 92.4
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 92.4
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 91.5
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 88.1
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 92.4
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 7.1e-41 170.6 118 88.1
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 87.3
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 87.3
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 91.5
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 87.3
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 87.3
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 88.1
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 1.7e-39 166.0 118 85.6
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 1.7e-39 166.0 116 92.2
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 1.7e-39 166.0 116 83.6
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 89.8
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 89.8
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 90.7
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.0
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 1.5e-38 162.9 118 89.0
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 1.5e-38 162.9 118 90.7
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 89.0
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 89.0
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 89.0
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 2.5e-38 162.2 118 88.1
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 75.4
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 87.3
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 88.1
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 86.4
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 86.4
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 7.3e-38 160.6 118 87.3
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 9.5e-38 160.2 118 88.1
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 9.5e-38 160.2 118 88.1
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 9.5e-38 160.2 118 86.4
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 9.5e-38 160.2 118 85.6
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 1.6e-37 159.5 118 88.1
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 1.6e-37 159.5 118 80.5
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 1.6e-37 159.5 118 88.1
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 87.3
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 2.1e-37 159.1 118 87.3
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 3.6e-37 158.3 118 86.4
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 4.7e-37 157.9 118 86.4
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 6.2e-37 157.5 118 86.4
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 5.2e-36 154.5 116 81.0
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 6.8e-36 154.1 118 83.9
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 6.8e-36 154.1 118 83.9
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 7.6e-35 150.6 118 82.2
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.7e-34 149.4 118 85.6
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 2.9e-34 148.7 118 82.2
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 1.4e-33 146.4 116 81.9
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 2.4e-33 145.6 150 60.0
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 6.0e-32 141.0 101 92.1
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 3.9e-31 138.3 103 88.3
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 1.6e-29 132.9 104 86.5
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 2.1e-29 132.5 102 89.2
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 6.2e-29 131.0 101 88.1
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 1.4e-28 129.8 102 86.3
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 6.9e-28 127.5 101 86.1
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 2.6e-27 125.6 118 72.9
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 4.2e-25 118.2 108 70.4
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 6.0e-24 114.4 90 85.6
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 1.3e-23 113.2 94 78.7
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 2.3e-23 112.5 92 77.2
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 5.1e-23 111.3 90 84.4
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 6.6e-23 110.9 118 68.6
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 2.4e-20 102.4 57 96.5
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 3.1e-20 102.1 119 56.3
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 3.1e-20 102.1 99 62.6
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 6.9e-20 100.9 57 94.7
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 9.0e-20 100.5 57 94.7
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 1.5e-19 99.8 57 93.0
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 2.6e-19 99.0 57 91.2
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 7.6e-19 97.4 57 91.2
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 3.8e-18 95.1 57 89.5
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 4.9e-18 94.7 57 87.7
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 3.0e-15 85.5 45 95.6
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 6.7e-15 84.3 117 43.6
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 1.5e-14 83.2 45 91.1
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 1.5e-14 83.2 45 91.1
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 3.3e-14 82.0 45 88.9
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 9.6e-14 80.5 120 43.3
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 9.6e-14 80.5 57 80.7
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 9.6e-14 80.5 96 69.8
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 4.8e-13 78.2 45 84.4
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 6.9e-12 74.3 47 85.1


User provided reference genes

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