Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.1e-87 326.6 168 100.0
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 4.2e-87 324.7 168 99.4
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 8.5e-48 194.1 151 62.3
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 8.5e-48 194.1 151 62.3
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 1.1e-47 193.7 148 62.2
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 1.4e-47 193.4 151 62.3
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 1.2e-46 190.3 145 62.1
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 2.1e-46 189.5 147 60.5
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 2.1e-46 189.5 148 61.5
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 2.1e-46 189.5 147 61.2
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 3.6e-46 188.7 146 59.6
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 6.1e-46 188.0 143 63.6
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 6.1e-46 188.0 149 61.7
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 6.1e-46 188.0 146 62.3
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 1.0e-45 187.2 147 59.9
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 1.0e-45 187.2 145 62.8
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 1.0e-45 187.2 149 61.7
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.8e-45 186.4 148 63.5
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 3.0e-45 185.7 147 59.2
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 3.0e-45 185.7 147 59.9
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 3.0e-45 185.7 146 58.2
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 3.0e-45 185.7 144 63.2
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 3.0e-45 185.7 148 58.8
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 3.0e-45 185.7 147 62.6
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 3.0e-45 185.7 148 62.8
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 3.9e-45 185.3 148 58.8
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 5.1e-45 184.9 147 61.9
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 5.1e-45 184.9 150 62.7
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 6.7e-45 184.5 147 61.2
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 6.7e-45 184.5 146 61.6
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 1.1e-44 183.7 147 61.2
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 1.1e-44 183.7 147 61.2
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 1.1e-44 183.7 147 61.2
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 1.1e-44 183.7 148 60.1
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 1.1e-44 183.7 147 61.9
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 1.1e-44 183.7 148 59.5
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 1.1e-44 183.7 146 60.3
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 1.5e-44 183.3 148 60.8
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.5e-44 183.3 146 57.5
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 1.5e-44 183.3 146 60.3
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 2.0e-44 183.0 149 59.7
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 2.0e-44 183.0 147 61.2
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 2.6e-44 182.6 148 58.8
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 3.3e-44 182.2 146 57.5
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 3.3e-44 182.2 148 59.5
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 4.4e-44 181.8 148 60.8
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 4.4e-44 181.8 147 60.5
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 4.4e-44 181.8 147 60.5
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 4.4e-44 181.8 147 60.5
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 4.4e-44 181.8 148 59.5
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 4.4e-44 181.8 147 60.5
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 4.4e-44 181.8 150 61.3
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 5.7e-44 181.4 142 58.5
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 5.7e-44 181.4 141 59.6
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 7.4e-44 181.0 148 60.1
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 9.7e-44 180.6 146 56.8
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 9.7e-44 180.6 148 56.8
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 9.7e-44 180.6 145 61.4
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 2.8e-43 179.1 149 57.7
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 3.7e-43 178.7 145 60.7
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 4.8e-43 178.3 144 59.0
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 8.2e-43 177.6 144 59.7
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 8.2e-43 177.6 146 59.6
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 1.1e-42 177.2 146 58.9
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 1.4e-42 176.8 140 59.3
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 1.8e-42 176.4 146 58.2
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.8e-42 176.4 156 59.0
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.8e-42 176.4 151 58.9
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 2.4e-42 176.0 146 58.9
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 3.1e-42 175.6 144 59.7
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 3.1e-42 175.6 149 57.7
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 5.3e-42 174.9 144 61.8
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 7.0e-42 174.5 144 59.7
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 9.1e-42 174.1 146 56.8
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 9.1e-42 174.1 149 53.7
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 1.2e-41 173.7 143 59.4
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 2.6e-41 172.6 147 58.5
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 3.5e-41 172.2 146 54.1
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 4.5e-41 171.8 142 59.9
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 5.9e-41 171.4 148 56.8
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 7.7e-41 171.0 144 58.3
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 7.7e-41 171.0 140 60.0
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 1.0e-40 170.6 147 56.5
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 6.5e-40 167.9 134 60.4
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 8.5e-40 167.5 143 58.7
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 8.5e-40 167.5 142 57.0
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 1.1e-39 167.2 145 56.6
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 1.1e-39 167.2 153 57.5
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 4.0e-37 158.7 144 53.5
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 7.5e-36 154.5 137 55.5
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 9.7e-36 154.1 140 49.3
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 1.1e-34 150.6 148 52.7
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 7.0e-34 147.9 136 52.9
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 1.0e-32 144.1 135 50.4
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 2.9e-32 142.5 135 51.9
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 6.5e-32 141.4 144 50.0
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 3.2e-31 139.0 138 52.2
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 5.2e-29 131.7 104 62.5
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 8.8e-29 131.0 149 47.0
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 7.0e-26 121.3 105 56.2
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 1.5e-23 113.6 100 59.0
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 1.9e-23 113.2 104 56.7
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 2.1e-22 109.8 102 55.9
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 8.0e-22 107.8 138 43.5
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.8e-21 106.7 145 44.1
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 4.4e-20 102.1 145 41.4
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 2.2e-19 99.8 158 38.6
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 4.1e-18 95.5 116 46.6
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 3.5e-17 92.4 104 47.1
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 2.9e-16 89.4 154 33.1
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 4.0e-13 79.0 89 47.2
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 7.8e-09 64.7 103 34.0
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 1.9e-07 60.1 78 43.6


User provided reference genes

Program Settings