Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.5e-150 536.2 272 100.0
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.3e-74 283.9 289 57.1
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 7.2e-73 278.1 291 55.3
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 1.0e-71 274.2 281 54.8
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 4.6e-59 232.3 288 48.3
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 3.6e-56 222.6 297 46.5
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 6.8e-55 218.4 286 47.6
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 8.9e-55 218.0 288 47.6
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.5e-54 217.2 297 45.8
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.5e-54 214.9 287 47.7
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 2.2e-53 213.4 297 46.8
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 4.9e-53 212.2 298 45.0
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 4.9e-53 212.2 297 45.1
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.4e-52 210.7 297 45.8
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 5.4e-52 208.8 288 47.6
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 9.2e-52 208.0 289 44.3
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 9.2e-52 208.0 321 43.0
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.6e-51 207.2 293 46.8
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.0e-51 206.8 264 47.7
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 2.0e-51 206.8 292 45.2
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 1.0e-50 204.5 300 44.7
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 3.0e-50 203.0 289 47.1
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 8.6e-50 201.4 299 43.5
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.9e-49 200.3 296 42.6
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 7.3e-49 198.4 295 44.7
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 9.5e-49 198.0 296 44.6
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-47 194.5 290 45.9
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 3.1e-47 193.0 292 42.5
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 4.0e-47 192.6 291 41.9
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.0e-46 190.3 294 41.5
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 2.2e-45 186.8 292 44.5
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 6.4e-45 185.3 292 42.8
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 6.4e-45 185.3 292 42.8
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 3.2e-44 183.0 305 42.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 7.1e-44 181.8 297 42.4
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 9.2e-44 181.4 291 41.2
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.2e-43 181.0 306 43.1
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.6e-43 180.6 292 41.8
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.6e-43 180.6 284 40.8
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.6e-43 180.6 309 41.1
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.7e-42 177.2 341 37.5
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 5.1e-42 175.6 295 40.0
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 4.3e-41 172.6 261 43.3
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 5.6e-41 172.2 294 41.8
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 2.1e-40 170.2 290 40.3
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 3.6e-40 169.5 261 42.5
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 6.2e-40 168.7 210 49.5
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 6.2e-40 168.7 241 43.6
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.1e-39 167.9 298 40.3
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.1e-39 167.9 201 51.2
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.4e-39 167.5 298 39.6
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 2.3e-39 166.8 323 39.0
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.0e-39 166.0 241 43.2
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 4.0e-39 166.0 291 40.2
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 8.9e-39 164.9 402 33.3
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.5e-38 164.1 204 48.5
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 2.0e-38 163.7 286 39.5
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.4e-38 162.9 386 34.2
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 4.4e-38 162.5 228 43.0
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 4.4e-38 162.5 296 41.6
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 7.6e-38 161.8 283 39.2
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 9.9e-38 161.4 283 39.2
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.3e-37 161.0 239 43.1
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.7e-37 160.6 241 41.9
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.7e-37 160.6 246 42.7
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.9e-37 159.8 289 41.2
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.8e-37 159.5 293 40.3
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.9e-37 159.1 273 42.1
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 4.9e-37 159.1 273 42.9
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 6.4e-37 158.7 289 40.1
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.1e-36 157.9 221 45.2
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 2.4e-36 156.8 295 40.0
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 3.2e-36 156.4 288 40.3
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 4.1e-36 156.0 288 38.5
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 5.4e-36 155.6 299 37.8
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 7.1e-36 155.2 294 39.1
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 2.1e-35 153.7 323 38.1
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 2.1e-35 153.7 257 42.0
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 3.5e-35 152.9 295 39.3
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 3.5e-35 152.9 295 39.3
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 3.5e-35 152.9 298 37.2
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 3.5e-35 152.9 246 40.7
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 4.6e-35 152.5 341 34.6
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.0e-35 152.1 291 37.8
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 7.8e-35 151.8 315 37.1
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.0e-34 151.4 295 39.0
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.0e-34 151.4 196 47.4
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.3e-34 151.0 291 37.5
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.3e-34 151.0 295 39.0
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.3e-34 151.0 241 40.7
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 1.7e-34 150.6 201 47.8
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.3e-34 150.2 304 38.2
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 3.0e-34 149.8 287 35.9
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.9e-34 149.4 276 38.8
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.3e-33 146.4 292 34.9
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.3e-33 146.4 292 34.9
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 7.3e-33 145.2 301 36.5
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 2.1e-32 143.7 257 39.3
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.8e-32 143.3 233 40.8
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.8e-32 143.3 283 37.8
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 8.1e-32 141.7 262 40.5
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 6.9e-31 138.7 300 37.7
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 5.8e-30 135.6 297 34.3
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 7.6e-30 135.2 264 37.1
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 9.9e-30 134.8 266 39.1
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.7e-29 134.0 218 40.4
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 6.4e-29 132.1 233 39.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 8.4e-29 131.7 202 42.6
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 5.4e-28 129.0 278 37.4
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.7e-27 126.7 243 41.2
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.0e-27 125.6 241 36.5
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 6.0e-27 125.6 287 34.8
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 1.0e-26 124.8 327 34.9
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 5.1e-26 122.5 301 36.2
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 2.5e-25 120.2 175 44.6
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.6e-24 117.5 298 32.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.6e-24 117.5 297 33.3
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 8.1e-24 115.2 307 32.9
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.1e-23 114.8 278 36.0
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 6.9e-23 112.1 316 31.3
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.5e-22 110.9 215 39.1
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.4e-22 109.8 252 35.3
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.6e-22 108.6 136 47.1
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.3e-21 107.8 159 44.7
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.2e-21 107.1 309 32.0
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.4e-20 104.4 160 41.9
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.3e-18 97.8 155 41.9
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 8.7e-18 95.1 121 49.6
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 5.6e-17 92.4 246 33.3
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 7.4e-17 92.0 123 48.0
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 7.4e-17 92.0 185 37.8
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 7.4e-17 92.0 124 43.5
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.1e-16 90.5 187 38.0
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 2.1e-16 90.5 180 38.9
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 2.1e-16 90.5 128 41.4
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 8.1e-16 88.6 110 47.3
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.1e-15 88.2 180 37.2
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 7.6e-14 82.0 84 53.6
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 4.9e-13 79.3 131 42.7
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 2.7e-11 73.6 95 46.3
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 6.7e-10 68.9 87 44.8
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 1.5e-09 67.8 109 38.5
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 6.2e-08 62.4 131 35.9
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.5e-06 57.8 72 47.2
AUR62005612 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.6e-06 57.0 63 46.0


User provided reference genes

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