Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 7.9e-169 597.0 306 100.0
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 3.3e-122 442.2 304 72.7
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 5.6e-122 441.4 304 73.4
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 4.7e-121 438.3 304 73.0
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 1.8e-120 436.4 304 72.4
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 5.2e-120 434.9 304 71.7
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.5e-119 433.3 304 69.7
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 4.9e-118 428.3 304 71.1
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.1e-117 427.2 300 72.3
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.9e-117 426.4 304 69.7
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 2.4e-117 426.0 304 71.1
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 9.2e-117 424.1 304 70.7
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 2.0e-116 422.9 358 62.3
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 7.8e-116 421.0 303 69.6
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 7.8e-116 421.0 304 70.7
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 7.8e-116 421.0 300 70.3
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.0e-115 420.6 304 69.4
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 2.3e-115 419.5 304 68.8
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 3.0e-115 419.1 304 69.1
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 3.9e-115 418.7 303 70.6
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 3.9e-115 418.7 303 68.3
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 5.0e-115 418.3 300 71.0
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 8.6e-115 417.5 300 70.0
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.5e-114 416.8 304 69.7
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.6e-114 414.8 304 68.1
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 7.3e-114 414.5 304 67.4
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.2e-113 413.7 304 66.8
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.8e-113 412.5 303 70.0
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 2.8e-113 412.5 303 70.0
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 3.6e-113 412.1 304 69.1
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 4.7e-113 411.8 304 69.7
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 4.7e-113 411.8 300 68.3
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 6.2e-113 411.4 304 68.1
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 8.0e-113 411.0 304 69.4
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.1e-112 410.6 301 68.1
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.8e-112 409.8 302 68.2
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.3e-112 409.5 330 65.2
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.3e-112 409.5 325 63.4
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 3.1e-112 409.1 300 67.7
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 3.1e-112 409.1 304 68.1
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.0e-112 408.7 300 69.0
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 5.2e-112 408.3 304 67.8
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 5.2e-112 408.3 304 67.1
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 6.8e-112 407.9 300 68.7
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 8.9e-112 407.5 304 65.5
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.2e-111 407.1 300 68.7
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.2e-111 407.1 303 67.7
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.5e-111 406.8 304 68.1
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.5e-111 406.8 304 67.4
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 2.0e-111 406.4 304 68.4
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 3.4e-111 405.6 304 67.8
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 3.4e-111 405.6 304 67.8
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 4.4e-111 405.2 303 65.7
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 5.8e-111 404.8 300 68.0
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 5.8e-111 404.8 306 66.3
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 7.5e-111 404.4 300 67.0
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 9.8e-111 404.1 294 70.1
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 9.8e-111 404.1 300 68.0
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.7e-110 403.3 304 66.1
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 4.9e-110 401.7 304 65.5
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 6.4e-110 401.4 304 65.8
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.1e-109 400.6 304 63.8
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.1e-109 400.6 300 66.0
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 1.1e-109 400.6 300 66.0
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 1.4e-109 400.2 304 65.5
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.9e-109 399.8 304 66.1
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.4e-109 399.4 300 67.7
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 2.4e-109 399.4 300 68.0
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 3.2e-109 399.1 300 65.7
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 3.2e-109 399.1 300 65.7
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 4.1e-109 398.7 304 63.8
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 5.4e-109 398.3 304 67.1
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 2.1e-108 396.4 304 65.8
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 4.6e-108 395.2 300 68.0
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 4.6e-108 395.2 304 65.5
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 6.0e-108 394.8 304 64.5
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 6.0e-108 394.8 300 64.7
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 7.8e-108 394.4 304 64.1
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 1.0e-107 394.0 304 64.8
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.7e-107 393.3 304 64.8
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.3e-107 392.9 293 68.3
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 3.0e-107 392.5 305 65.6
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.1e-106 390.6 300 64.3
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 2.5e-106 389.4 302 65.6
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 3.3e-106 389.0 300 64.3
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.6e-105 386.7 304 64.5
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 3.6e-105 385.6 266 72.2
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 3.1e-104 382.5 294 67.7
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 3.4e-103 379.0 264 73.1
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.1e-101 374.0 332 58.1
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 6.6e-99 364.8 264 69.3
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.2e-95 354.0 497 44.3
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.3e-94 350.5 328 57.6
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.4e-93 347.1 299 61.2
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 9.6e-90 334.3 231 71.0
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 3.6e-89 332.4 300 54.7
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 6.4e-86 321.6 300 56.0
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 3.2e-85 319.3 321 56.4
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.3e-83 313.9 303 55.1
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 3.9e-83 312.4 300 54.7
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.1e-82 310.8 328 54.9
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.4e-80 303.9 214 70.6
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 4.2e-77 292.4 297 52.2
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 4.6e-76 288.9 300 54.0
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 7.6e-71 271.6 210 66.7
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.2e-68 264.2 300 47.7
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 3.3e-58 229.6 178 66.9
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.4e-48 197.6 120 79.2
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 6.5e-46 188.7 119 74.8
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.5e-39 166.4 116 66.4
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 2.9e-38 163.3 151 51.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.1e-37 161.4 115 71.3
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 3.2e-29 133.3 91 68.1
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 8.0e-28 128.6 110 57.3
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 2.7e-23 113.6 249 35.7
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.9e-21 107.5 156 42.9
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 8.0e-20 102.1 321 27.1
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 8.8e-19 98.6 93 47.3
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.7e-17 94.4 71 63.4
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.3e-17 92.4 57 71.9
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.8e-16 90.9 131 42.0
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 2.1e-12 77.4 58 69.0
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 2.0e-10 70.9 138 37.0
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 3.2e-08 63.5 58 51.7
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 5.4e-08 62.8 214 26.6
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.5e-07 60.1 102 35.3
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 1.7e-06 57.8 48 54.2


User provided reference genes

Program Settings