Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015562 Vanilla planifolia HOM05D002337 ORTHO05D002412 1.9e-53 212.2 105 100.0
HPP92_015531 Vanilla planifolia HOM05D002337 ORTHO05D002412 8.5e-22 107.1 97 61.9
Dinv35665 Davidia involucrata HOM05D002337 ORTHO05D002412 1.2e-12 76.6 100 46.0
Ciclev10031892m.g Citrus clementina HOM05D002337 ORTHO05D002412 4.7e-12 74.7 103 44.7
Gohir.A10G210000 Gossypium hirsutum HOM05D002337 ORTHO05D002412 8.0e-12 73.9 103 44.7
PGR142G1446 Punica granatum HOM05D002337 ORTHO05D002412 1.4e-11 73.2 105 47.6
PGSC0003DMG400023413 Solanum tuberosum HOM05D002337 ORTHO05D002412 1.4e-11 73.2 107 41.1
Nitab4.5_0000914g0140 Nicotiana tabacum HOM05D002337 ORTHO05D002412 3.0e-11 72.0 108 40.7
Carub.0004s2142 Capsella rubella HOM05D002337 ORTHO05D002412 4.0e-11 71.6 105 41.9
HPP92_017949 Vanilla planifolia HOM05D002337 ORTHO05D002412 4.0e-11 71.6 102 46.1
COL.COLO4_10886 Corchorus olitorius HOM05D002337 ORTHO05D002412 5.2e-11 71.2 102 42.2
Haze_16978 Corylus avellana HOM05D002337 ORTHO05D002412 5.2e-11 71.2 102 43.1
Duzib128G1601 Durio zibethinus HOM05D002337 ORTHO05D002412 5.2e-11 71.2 100 42.0
Gohir.D10G218300 Gossypium hirsutum HOM05D002337 ORTHO05D002412 5.2e-11 71.2 104 44.2
BolC4t22441H Brassica oleracea HOM05D002337 ORTHO05D002412 6.8e-11 70.9 100 45.0
Gorai.011G245000 Gossypium raimondii HOM05D002337 ORTHO05D002412 6.8e-11 70.9 104 43.3
THA.LOC104810001 Tarenaya hassleriana HOM05D002337 ORTHO05D002412 8.8e-11 70.5 100 42.0
Aqoxy4G03075 Aquilegia oxysepala HOM05D002337 ORTHO05D002412 1.2e-10 70.1 99 44.4
BcaB02g09129 Brassica carinata HOM05D002337 ORTHO05D002412 1.2e-10 70.1 98 43.9
BraA05t19669Z Brassica rapa HOM05D002337 ORTHO05D002412 1.2e-10 70.1 107 43.9
Psat6g238280 Pisum sativum HOM05D002337 ORTHO05D002412 1.2e-10 70.1 107 44.9
TAR636G1284 Trochodendron aralioides HOM05D002337 ORTHO05D002412 1.2e-10 70.1 101 44.6
A05p07030 Brassica napus HOM05D002337 ORTHO05D002412 2.0e-10 69.3 107 43.0
QL08p057719 Quercus lobata HOM05D002337 ORTHO05D002412 2.0e-10 69.3 100 46.0
AUR62041630 Chenopodium quinoa HOM05D002337 ORTHO05D002412 2.6e-10 68.9 97 43.3
Peaxi162Scf00015g00254 Petunia axillaris HOM05D002337 ORTHO05D002412 2.6e-10 68.9 107 40.2
C04p08430 Brassica napus HOM05D002337 ORTHO05D002412 3.4e-10 68.6 106 43.4
Lalb_Chr06g0164141 Lupinus albus HOM05D002337 ORTHO05D002412 3.4e-10 68.6 103 44.7
Potri.010G212800 Populus trichocarpa HOM05D002337 ORTHO05D002412 3.4e-10 68.6 100 42.0
BcaC02g12053 Brassica carinata HOM05D002337 ORTHO05D002412 4.4e-10 68.2 107 43.0
CSS0031665 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 5.7e-10 67.8 103 39.8
AUR62035982 Chenopodium quinoa HOM05D002337 ORTHO05D002412 5.7e-10 67.8 102 46.1
DCAR_014946 Daucus carota HOM05D002337 ORTHO05D002412 5.7e-10 67.8 100 45.0
Hma1.2p1_0207F.1_g087900 Hydrangea macrophylla HOM05D002337 ORTHO05D002412 5.7e-10 67.8 101 41.6
Lalb_Chr21g0307221 Lupinus albus HOM05D002337 ORTHO05D002412 5.7e-10 67.8 106 42.5
RcHm_v2.0_Chr7g0221341 Rosa chinensis HOM05D002337 ORTHO05D002412 5.7e-10 67.8 102 44.1
CiPaw.09G186500 Carya illinoinensis HOM05D002337 ORTHO05D002412 7.5e-10 67.4 111 41.4
PGR044G1716 Punica granatum HOM05D002337 ORTHO05D002412 7.5e-10 67.4 105 41.0
Sopen05g033320 Solanum pennellii HOM05D002337 ORTHO05D002412 7.5e-10 67.4 108 39.8
Atru.chr12.580 Acer truncatum HOM05D002337 ORTHO05D002412 9.8e-10 67.0 113 40.7
BcaB06g29080 Brassica carinata HOM05D002337 ORTHO05D002412 9.8e-10 67.0 101 41.6
Nn2g10536 Nelumbo nucifera HOM05D002337 ORTHO05D002412 9.8e-10 67.0 102 44.1
Sabra16G0089000 Salix brachista HOM05D002337 ORTHO05D002412 9.8e-10 67.0 106 43.4
Thhalv10016955m.g Eutrema salsugineum HOM05D002337 ORTHO05D002412 1.3e-09 66.6 95 43.2
EL10Ac2g03480 Beta vulgaris HOM05D002337 ORTHO05D002412 1.7e-09 66.2 99 43.4
BcaC02g07410 Brassica carinata HOM05D002337 ORTHO05D002412 1.7e-09 66.2 95 43.2
C04p67270 Brassica napus HOM05D002337 ORTHO05D002412 1.7e-09 66.2 95 43.2
BolC4t28222H Brassica oleracea HOM05D002337 ORTHO05D002412 1.7e-09 66.2 95 43.2
Potri.016G080800 Populus trichocarpa HOM05D002337 ORTHO05D002412 1.7e-09 66.2 105 41.0
MBI14_g35936_MAGBIO Magnolia biondii HOM05D002337 ORTHO05D002412 2.2e-09 65.9 94 42.6
AL4G36720 Arabidopsis lyrata HOM05D002337 ORTHO05D002412 2.8e-09 65.5 95 43.2
AT2G39370 Arabidopsis thaliana HOM05D002337 ORTHO05D002412 2.8e-09 65.5 95 43.2
Sp4g21680 Schrenkiella parvula HOM05D002337 ORTHO05D002412 2.8e-09 65.5 95 43.2
Solyc05g054850.1 Solanum lycopersicum HOM05D002337 ORTHO05D002412 2.8e-09 65.5 108 38.9
Eucgr.J01155 Eucalyptus grandis HOM05D002337 ORTHO05D002412 3.7e-09 65.1 101 44.6
A04p30530 Brassica napus HOM05D002337 ORTHO05D002412 4.9e-09 64.7 95 42.1
BraA04t18454Z Brassica rapa HOM05D002337 ORTHO05D002412 4.9e-09 64.7 95 42.1
DCAR_017753 Daucus carota HOM05D002337 ORTHO05D002412 4.9e-09 64.7 100 41.0
Rhsim03G0125800 Rhododendron simsii HOM05D002337 ORTHO05D002412 4.9e-09 64.7 103 38.8
RhsimUnG0167900 Rhododendron simsii HOM05D002337 ORTHO05D002412 4.9e-09 64.7 103 38.8
TAR623G1231 Trochodendron aralioides HOM05D002337 ORTHO05D002412 4.9e-09 64.7 104 39.4
CARHR134220 Cardamine hirsuta HOM05D002337 ORTHO05D002412 6.3e-09 64.3 101 40.6
Gohir.A05G299400 Gossypium hirsutum HOM05D002337 ORTHO05D002412 6.3e-09 64.3 96 45.8
Medtr1g115605 Medicago truncatula HOM05D002337 ORTHO05D002412 6.3e-09 64.3 103 43.7
Ah.16g107740 Amaranthus hybridus HOM05D002337 ORTHO05D002412 8.3e-09 63.9 98 38.8
Gohir.D05G299100 Gossypium hirsutum HOM05D002337 ORTHO05D002412 8.3e-09 63.9 96 45.8
Gorai.009G316400 Gossypium raimondii HOM05D002337 ORTHO05D002412 8.3e-09 63.9 96 45.8
Phvul.007G008800 Phaseolus vulgaris HOM05D002337 ORTHO05D002412 8.3e-09 63.9 100 41.0
CAN.G1602.6 Capsicum annuum HOM05D002337 ORTHO05D002412 1.1e-08 63.5 108 38.0
CiPaw.01G280500 Carya illinoinensis HOM05D002337 ORTHO05D002412 1.1e-08 63.5 100 43.0
FvH4_7g20880 Fragaria vesca HOM05D002337 ORTHO05D002412 1.1e-08 63.5 102 43.1
FAN06G1636 Fragaria x ananassa HOM05D002337 ORTHO05D002412 1.1e-08 63.5 102 43.1
FAN06G1669 Fragaria x ananassa HOM05D002337 ORTHO05D002412 1.1e-08 63.5 102 43.1
Peaxi162Scf00039g00045 Petunia axillaris HOM05D002337 ORTHO05D002412 1.1e-08 63.5 113 39.8
TAR369G0281 Trochodendron aralioides HOM05D002337 ORTHO05D002412 1.1e-08 63.5 104 41.3
MELO3C023814.2 Cucumis melo HOM05D002337 ORTHO05D002412 1.4e-08 63.2 100 42.0
CsaV3_5G006570 Cucumis sativus L. HOM05D002337 ORTHO05D002412 1.4e-08 63.2 100 42.0
FAN03G0281 Fragaria x ananassa HOM05D002337 ORTHO05D002412 1.4e-08 63.2 102 43.1
Potri.006G214700 Populus trichocarpa HOM05D002337 ORTHO05D002412 1.8e-08 62.8 108 43.5
Aa31LG5G20330 Aethionema arabicum HOM05D002337 ORTHO05D002412 2.4e-08 62.4 109 39.4
FAN01G2855 Fragaria x ananassa HOM05D002337 ORTHO05D002412 3.1e-08 62.0 106 41.5
FAN10G2584 Fragaria x ananassa HOM05D002337 ORTHO05D002412 3.1e-08 62.0 102 42.2
Lj5g0026996 Lotus japonicus HOM05D002337 ORTHO05D002412 3.1e-08 62.0 102 40.2
TAR633G1343 Trochodendron aralioides HOM05D002337 ORTHO05D002412 3.1e-08 62.0 102 40.2
CiPaw.02G179000 Carya illinoinensis HOM05D002337 ORTHO05D002412 5.4e-08 61.2 99 42.4
Cc06_g03190 Coffea canephora HOM05D002337 ORTHO05D002412 7.0e-08 60.8 98 41.8
TPR.G201 Trifolium pratense HOM05D002337 ORTHO05D002412 7.0e-08 60.8 103 41.7
Manes.08G072701 Manihot esculenta HOM05D002337 ORTHO05D002412 1.2e-07 60.1 101 40.6
Manes.08G072800 Manihot esculenta HOM05D002337 ORTHO05D002412 1.2e-07 60.1 101 40.6
Prupe.2G225400 Prunus persica HOM05D002337 ORTHO05D002412 1.2e-07 60.1 103 38.8
HanXRQChr14g0457521 Helianthus annuus HOM05D002337 ORTHO05D002412 1.6e-07 59.7 98 41.8
RcHm_v2.0_Chr3g0467911 Rosa chinensis HOM05D002337 ORTHO05D002412 1.6e-07 59.7 108 40.7
Prupe.6G246800 Prunus persica HOM05D002337 ORTHO05D002412 2.0e-07 59.3 104 42.3
Sed0022304 Sechium edule HOM05D002337 ORTHO05D002412 2.7e-07 58.9 100 42.0
MD12G1132800 Malus domestica HOM05D002337 ORTHO05D002412 3.5e-07 58.5 93 39.8
Os01g0836900 Oryza sativa ssp. japonica HOM05D002337 ORTHO05D002412 3.5e-07 58.5 94 42.6
VMungo0720G2225 Vigna mungo HOM05D002337 ORTHO05D002412 3.5e-07 58.5 102 42.2
Cpa.g.sc1.312 Carica papaya HOM05D002337 ORTHO05D002412 4.5e-07 58.2 76 48.7
Ca_11315_v3 Cicer arietinum L. HOM05D002337 ORTHO05D002412 4.5e-07 58.2 101 40.6
Haze_20705 Corylus avellana HOM05D002337 ORTHO05D002412 4.5e-07 58.2 99 40.4
Manes.07G107400 Manihot esculenta HOM05D002337 ORTHO05D002412 4.5e-07 58.2 98 38.8
Manes.09G088200 Manihot esculenta HOM05D002337 ORTHO05D002412 4.5e-07 58.2 99 42.4
Oeu058315.1 Olea europaea HOM05D002337 ORTHO05D002412 4.5e-07 58.2 108 40.7
Oeu058316.1 Olea europaea HOM05D002317 ORTHO05D002420 4.5e-07 58.2 108 40.7
Sabra10G0164700 Salix brachista HOM05D002337 ORTHO05D002412 4.5e-07 58.2 112 38.4
Thecc.10G060300 Theobroma cacao HOM05D002337 ORTHO05D002412 5.9e-07 57.8 101 40.6
Aqoxy2G01952 Aquilegia oxysepala HOM05D002337 ORTHO05D002412 7.7e-07 57.4 100 40.0
Sc20g0002380 Simmondsia chinensis HOM05D002337 ORTHO05D002412 7.7e-07 57.4 105 39.0
Cfa017455 Carpinus fangiana HOM05D002337 ORTHO05D002412 1.0e-06 57.0 99 39.4
QL07p046196 Quercus lobata HOM05D002337 ORTHO05D002412 1.0e-06 57.0 106 37.7
CiPaw.10G140800 Carya illinoinensis HOM05D002337 ORTHO05D002412 1.3e-06 56.6 108 39.8
ClCG04G008580 Citrullus lanatus HOM05D002337 ORTHO05D002412 1.3e-06 56.6 108 38.0
Dinv25946 Davidia involucrata HOM05D002337 ORTHO05D002412 1.3e-06 56.6 95 40.0
Duzib114G0327 Durio zibethinus HOM05D002337 ORTHO05D002412 1.3e-06 56.6 101 39.6
ECA276G0006 Erigeron canadensis HOM05D002337 ORTHO05D002412 1.3e-06 56.6 106 36.8
Eucgr.G02770 Eucalyptus grandis HOM05D002337 ORTHO05D002412 1.3e-06 56.6 97 41.2
Rhsim05G0185600 Rhododendron simsii HOM05D002337 ORTHO05D002412 1.3e-06 56.6 97 40.2
ClCG10G020790 Citrullus lanatus HOM05D002337 ORTHO05D002412 1.7e-06 56.2 107 39.3
ClCG10G020820 Citrullus lanatus HOM05D002337 ORTHO05D002412 1.7e-06 56.2 107 39.3
FvH4_6g14700 Fragaria vesca HOM05D002337 ORTHO05D002412 1.7e-06 56.2 108 39.8
Os05g0462200 Oryza sativa ssp. japonica HOM05D002337 ORTHO05D002412 1.7e-06 56.2 100 39.0
FAN09G0919 Fragaria x ananassa HOM05D002337 ORTHO05D002412 2.3e-06 55.8 108 39.8
CsaV3_3G035200 Cucumis sativus L. HOM05D002337 ORTHO05D002412 2.9e-06 55.5 105 40.0
FAN02G2305 Fragaria x ananassa HOM05D002337 ORTHO05D002412 2.9e-06 55.5 108 39.8
FAN05G2144 Fragaria x ananassa HOM05D002337 ORTHO05D002412 2.9e-06 55.5 108 39.8
FAN14G0500 Fragaria x ananassa HOM05D002337 ORTHO05D002412 2.9e-06 55.5 108 39.8
Lsat_1_v5_gn_2_116281 Lactuca sativa HOM05D002337 ORTHO05D002412 2.9e-06 55.5 106 35.8
BcaC02g12054 Brassica carinata HOM05D002337 ORTHO05D002412 3.8e-06 55.1 82 41.5
CSS0046032 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 3.8e-06 55.1 93 40.9
ClCG02G013620 Citrullus lanatus HOM05D002337 ORTHO05D002412 5.0e-06 54.7 33 75.8
MD04G1117200 Malus domestica HOM05D002337 ORTHO05D002412 5.0e-06 54.7 93 38.7
Dinv31396 Davidia involucrata HOM05D002337 ORTHO05D002412 6.6e-06 54.3 97 40.2
Migut.L01636 Erythranthe guttata HOM05D002337 ORTHO05D002412 6.6e-06 54.3 113 33.6
Gohir.A05G352200 Gossypium hirsutum HOM05D002337 ORTHO05D002412 6.6e-06 54.3 33 75.8
Gohir.D04G060700 Gossypium hirsutum HOM05D002337 ORTHO05D002412 6.6e-06 54.3 33 75.8
Gorai.012G067600 Gossypium raimondii HOM05D002337 ORTHO05D002412 6.6e-06 54.3 33 75.8
HanXRQChr14g0453891 Helianthus annuus HOM05D002337 ORTHO05D002412 8.6e-06 53.9 96 39.6
Manes.10G038400 Manihot esculenta HOM05D002337 ORTHO05D002412 8.6e-06 53.9 102 38.2


User provided reference genes

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