Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015382 Vanilla planifolia HOM05D003731 ORTHO05D004429 6.2e-52 207.2 108 100.0
HPP92_028311 Vanilla planifolia HOM05D003731 ORTHO05D004429 1.0e-33 146.7 79 98.7
TAR625G0125 Trochodendron aralioides HOM05D003731 ORTHO05D004429 8.2e-28 127.1 78 82.1
HPP92_010289 Vanilla planifolia HOM05D003731 ORTHO05D004429 3.1e-27 125.2 74 87.8
Nn8g40740 Nelumbo nucifera HOM05D003731 ORTHO05D004429 9.1e-27 123.6 78 79.5
Os08g0517500 Oryza sativa ssp. japonica HOM05D003731 ORTHO05D004429 1.2e-26 123.2 76 82.9
Zm00001eb035800 Zea mays HOM05D003731 ORTHO05D004429 1.2e-26 123.2 72 86.1
Cfa002143 Carpinus fangiana HOM05D003731 ORTHO05D004429 1.5e-26 122.9 74 83.8
Haze_16281 Corylus avellana HOM05D003731 ORTHO05D004429 1.5e-26 122.9 74 83.8
Hund05680 Selenicereus undatus HOM05D003731 ORTHO05D004429 1.5e-26 122.9 76 78.9
RcHm_v2.0_Chr2g0149681 Rosa chinensis HOM05D003731 ORTHO05D004429 5.9e-26 120.9 74 82.4
Dinv20345 Davidia involucrata HOM05D003731 ORTHO05D008196 7.7e-26 120.6 74 83.8
Prupe.3G020500 Prunus persica HOM05D003731 ORTHO05D004429 7.7e-26 120.6 74 79.7
Atru.chr1.2721 Acer truncatum HOM05D003731 ORTHO05D004429 1.0e-25 120.2 74 81.1
ATR0626G101 Amborella trichopoda HOM05D003731 ORTHO05D004429 1.0e-25 120.2 76 77.6
CANSAT01G0693 Cannabis sativa HOM05D003731 ORTHO05D004429 1.0e-25 120.2 74 81.1
FvH4_6g37120 Fragaria vesca HOM05D003731 ORTHO05D004429 1.3e-25 119.8 74 82.4
FAN14G5835 Fragaria x ananassa HOM05D003731 ORTHO05D004429 1.3e-25 119.8 74 82.4
QL05p083882 Quercus lobata HOM05D003731 ORTHO05D004429 1.3e-25 119.8 74 81.1
Hma1.2p1_0517F.1_g170700 Hydrangea macrophylla HOM05D003731 ORTHO05D004429 1.7e-25 119.4 74 82.4
Hma1.2p1_1111F.1_g258350 Hydrangea macrophylla HOM05D003731 ORTHO05D004429 1.7e-25 119.4 74 81.1
Lj3g0007083 Lotus japonicus HOM05D003731 ORTHO05D004429 1.7e-25 119.4 76 80.3
Lalb_Chr01g0011841 Lupinus albus HOM05D003731 ORTHO05D004429 1.7e-25 119.4 74 81.1
MD09G1161400 Malus domestica HOM05D003731 ORTHO05D004429 1.7e-25 119.4 74 79.7
MD17G1147200 Malus domestica HOM05D003731 ORTHO05D004429 1.7e-25 119.4 74 78.4
Ca_20505_v3 Cicer arietinum L. HOM05D003731 ORTHO05D004429 2.2e-25 119.0 76 77.6
Ah.08g217760 Amaranthus hybridus HOM05D003731 ORTHO05D008196 2.9e-25 118.6 76 77.6
CARHR041710 Cardamine hirsuta HOM05D003731 ORTHO05D004429 2.9e-25 118.6 74 78.4
PSO170G0363 Papaver somniferum HOM05D003731 ORTHO05D004429 2.9e-25 118.6 73 80.8
PGSC0003DMG401026514 Solanum tuberosum HOM05D003731 ORTHO05D004429 2.9e-25 118.6 76 77.6
PGSC0003DMG402026514 Solanum tuberosum HOM05D003731 ORTHO05D004429 2.9e-25 118.6 76 77.6
Dinv37787 Davidia involucrata HOM05D003731 ORTHO05D004429 3.8e-25 118.2 73 83.6
Eucgr.F04024 Eucalyptus grandis HOM05D003731 ORTHO05D004429 3.8e-25 118.2 74 78.4
FAN09G0689 Fragaria x ananassa HOM05D003731 ORTHO05D004429 3.8e-25 118.2 74 82.4
Medtr4g007990 Medicago truncatula HOM05D003731 ORTHO05D004429 3.8e-25 118.2 76 78.9
Nitab4.5_0002354g0040 Nicotiana tabacum HOM05D003731 ORTHO05D004429 3.8e-25 118.2 74 78.4
Potri.008G006400 Populus trichocarpa HOM05D003731 ORTHO05D004429 3.8e-25 118.2 74 81.1
CiPaw.01G089700 Carya illinoinensis HOM05D003731 ORTHO05D004429 5.0e-25 117.9 74 79.7
Glyma.08G221400 Glycine max HOM05D003731 ORTHO05D004429 5.0e-25 117.9 76 77.6
Solyc06g063290.3 Solanum lycopersicum HOM05D003731 ORTHO05D004429 5.0e-25 117.9 76 77.6
Sopen06g022750 Solanum pennellii HOM05D003731 ORTHO05D004429 5.0e-25 117.9 76 77.6
Actinidia31131 Actinidia chinensis HOM05D003731 ORTHO05D004429 6.5e-25 117.5 74 81.1
FAN05G3538 Fragaria x ananassa HOM05D003731 ORTHO05D004429 6.5e-25 117.5 74 81.1
Glyma.07G020600 Glycine max HOM05D003731 ORTHO05D004429 6.5e-25 117.5 76 77.6
Phvul.008G254200 Phaseolus vulgaris HOM05D003731 ORTHO05D004429 6.5e-25 117.5 76 77.6
VMungo0647G1366 Vigna mungo HOM05D003731 ORTHO05D004429 6.5e-25 117.5 76 77.6
AL1G59450 Arabidopsis lyrata HOM05D003731 ORTHO05D004429 8.5e-25 117.1 74 77.0
Sabra08G0003400 Salix brachista HOM05D003731 ORTHO05D004429 8.5e-25 117.1 74 79.7
GSVIVG01029573001 Vitis vinifera HOM05D003731 ORTHO05D004429 8.5e-25 117.1 74 79.7
Migut.I01187 Erythranthe guttata HOM05D003731 ORTHO05D004429 1.1e-24 116.7 74 77.0
TPR.G24561 Trifolium pratense HOM05D003731 ORTHO05D004429 1.1e-24 116.7 76 78.9
COL.COLO4_31180 Corchorus olitorius HOM05D003731 ORTHO05D004429 1.4e-24 116.3 74 75.7
PSO063G0738 Papaver somniferum HOM05D003731 ORTHO05D004429 1.4e-24 116.3 73 79.5
Cc04_g00280 Coffea canephora HOM05D003731 ORTHO05D004429 1.9e-24 115.9 74 79.7
Duzib235G1293 Durio zibethinus HOM05D003731 ORTHO05D004429 1.9e-24 115.9 74 79.7
Manes.16G046301 Manihot esculenta HOM05D003731 ORTHO05D004429 1.9e-24 115.9 74 78.4
AUR62001353 Chenopodium quinoa HOM05D003731 ORTHO05D004429 2.5e-24 115.5 76 76.3
HanXRQChr02g0032091 Helianthus annuus HOM05D003731 ORTHO05D004429 2.5e-24 115.5 74 79.7
THA.LOC104817922 Tarenaya hassleriana HOM05D003731 ORTHO05D004429 2.5e-24 115.5 74 77.0
AT3G21140 Arabidopsis thaliana HOM05D003731 ORTHO05D004429 3.2e-24 115.2 73 76.7
Carub.0001s4041 Capsella rubella HOM05D003731 ORTHO05D004429 3.2e-24 115.2 74 75.7
DCAR_022617 Daucus carota HOM05D003731 ORTHO05D004429 3.2e-24 115.2 74 78.4
FAN02G2868 Fragaria x ananassa HOM05D003731 ORTHO05D004429 3.2e-24 115.2 73 80.8
TWI12G0642 Tripterygium wilfordii HOM05D003731 ORTHO05D004429 3.2e-24 115.2 74 75.7
Aqoxy7G02835 Aquilegia oxysepala HOM05D003731 ORTHO05D004429 4.2e-24 114.8 78 73.1
AL3G35080 Arabidopsis lyrata HOM05D003731 ORTHO05D004429 4.2e-24 114.8 73 76.7
EL10Ac7g18173 Beta vulgaris HOM05D003731 ORTHO05D004429 4.2e-24 114.8 76 73.7
CAN.G308.12 Capsicum annuum HOM05D003731 ORTHO05D004429 4.2e-24 114.8 76 73.7
AT1G51560 Arabidopsis thaliana HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 75.7
MSTRG.22505 Avicennia marina HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 74.3
BcaC09g49052 Brassica carinata HOM05D003731 ORTHO05D004429 5.5e-24 114.4 73 76.7
A05p19510 Brassica napus HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 77.0
C01p43100 Brassica napus HOM05D003731 ORTHO05D004429 5.5e-24 114.4 73 76.7
BraA05t20855Z Brassica rapa HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 77.0
MELO3C024281.2 Cucumis melo HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 77.0
CsaV3_7G033680 Cucumis sativus L. HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 77.0
Gohir.D02G107500 Gossypium hirsutum HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 78.4
Gorai.005G122100 Gossypium raimondii HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 78.4
Oeu001813.1 Olea europaea HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 79.7
PGR102G1715 Punica granatum HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 74.3
Sp1g38210 Schrenkiella parvula HOM05D003731 ORTHO05D004429 5.5e-24 114.4 74 77.0
Lsat_1_v5_gn_1_39481 Lactuca sativa HOM05D003731 ORTHO05D004429 7.2e-24 114.0 76 75.0
MBI16_g05829_MAGBIO Magnolia biondii HOM05D003731 ORTHO05D004429 7.2e-24 114.0 69 84.1
Peaxi162Scf00207g01628 Petunia axillaris HOM05D003731 ORTHO05D004429 7.2e-24 114.0 70 80.0
Sed0015920 Sechium edule HOM05D003731 ORTHO05D004429 7.2e-24 114.0 74 75.7
CDE05G0121 Ceratophyllum demersum HOM05D003731 ORTHO05D004429 9.4e-24 113.6 71 83.1
Potri.010G252300 Populus trichocarpa HOM05D003731 ORTHO05D004429 9.4e-24 113.6 74 79.7
arahy.Tifrunner.gnm1.ann1.C9Z78F Arachis hypogaea HOM05D003731 ORTHO05D004429 1.2e-23 113.2 75 78.7
BcaB06g26184 Brassica carinata HOM05D003731 ORTHO05D004429 1.2e-23 113.2 73 76.7
BcaC05g28253 Brassica carinata HOM05D003731 ORTHO05D004429 1.2e-23 113.2 73 76.7
BcaC08g43921 Brassica carinata HOM05D003731 ORTHO05D004429 1.2e-23 113.2 74 75.7
A05p27580 Brassica napus HOM05D003731 ORTHO05D004429 1.2e-23 113.2 73 76.7
C05p42680 Brassica napus HOM05D003731 ORTHO05D004429 1.2e-23 113.2 73 76.7
C06p13140 Brassica napus HOM05D003731 ORTHO05D004429 1.2e-23 113.2 74 75.7
BolC5t32990H Brassica oleracea HOM05D003731 ORTHO05D004429 1.2e-23 113.2 73 76.7
BolC6t36470H Brassica oleracea HOM05D003731 ORTHO05D004429 1.2e-23 113.2 74 75.7
CSS0017795 Camellia sinensis var. sinensis HOM05D003731 ORTHO05D004429 1.2e-23 113.2 74 79.7
AUR62025651 Chenopodium quinoa HOM05D003731 ORTHO05D004429 1.2e-23 113.2 76 75.0
Oeu049642.2 Olea europaea HOM05D003731 ORTHO05D004429 1.2e-23 113.2 73 76.7
Oeu050745.3 Olea europaea HOM05D003731 ORTHO05D004429 1.2e-23 113.2 73 75.3
Rhsim08G0249300 Rhododendron simsii HOM05D003731 ORTHO05D004429 1.2e-23 113.2 74 77.0
SEGI_04052 Sequoiadendron giganteum HOM05D003731 ORTHO05D004429 1.2e-23 113.2 77 75.3
SGA_v2.0_scaffold122G33277 Striga asiatica HOM05D003731 ORTHO05D004429 1.2e-23 113.2 74 75.7
C03p51470 Brassica napus HOM05D003731 ORTHO05D004429 1.6e-23 112.8 73 75.3
Lj9A542G26 Lonicera japonica HOM05D003731 ORTHO05D004429 1.6e-23 112.8 77 74.0
Nitab4.5_0003757g0080 Nicotiana tabacum HOM05D003731 ORTHO05D004429 1.6e-23 112.8 77 76.6
Hund18606 Selenicereus undatus HOM05D003731 ORTHO05D004429 1.6e-23 112.8 73 76.7
THA.LOC104798773 Tarenaya hassleriana HOM05D003731 ORTHO05D004429 1.6e-23 112.8 74 77.0
vmacro18751 Vaccinium macrocarpon HOM05D003731 ORTHO05D004429 1.6e-23 112.8 74 77.0
arahy.Tifrunner.gnm1.ann1.T57K28 Arachis hypogaea HOM05D003731 ORTHO05D004429 2.1e-23 112.5 75 78.7
A03p42050 Brassica napus HOM05D003731 ORTHO05D004429 2.1e-23 112.5 73 76.7
BraA03t13359Z Brassica rapa HOM05D003731 ORTHO05D004429 2.1e-23 112.5 73 76.7
BraA05t21647Z Brassica rapa HOM05D003731 ORTHO05D004429 2.1e-23 112.5 73 76.7
Os02g0148400 Oryza sativa ssp. japonica HOM05D003731 ORTHO05D004429 2.1e-23 112.5 71 76.1
Sabra10G0196300 Salix brachista HOM05D003731 ORTHO05D004429 2.1e-23 112.5 83 72.3
Aa31LG10G3210 Aethionema arabicum HOM05D003731 ORTHO05D004429 2.7e-23 112.1 73 72.6
Zm00001eb232310 Zea mays HOM05D003731 ORTHO05D004429 2.7e-23 112.1 74 77.0
BcaC01g03525 Brassica carinata HOM05D003731 ORTHO05D004429 3.6e-23 111.7 73 75.3
BolC3t17432H Brassica oleracea HOM05D003731 ORTHO05D004429 3.6e-23 111.7 73 75.3
Thhalv10011555m.g Eutrema salsugineum HOM05D003731 ORTHO05D004429 3.6e-23 111.7 74 75.7
Thhalv10020874m.g Eutrema salsugineum HOM05D003731 ORTHO05D004429 3.6e-23 111.7 73 75.3
Lj5A23G26 Lonicera japonica HOM05D003731 ORTHO05D004429 3.6e-23 111.7 74 81.1
Peaxi162Scf00038g02535 Petunia axillaris HOM05D003731 ORTHO05D004429 3.6e-23 111.7 70 80.0
BcaB04g20609 Brassica carinata HOM05D003731 ORTHO05D004429 4.7e-23 111.3 72 75.0
BcaNung05301 Brassica carinata HOM05D003731 ORTHO05D004429 4.7e-23 111.3 72 75.0
A01p33720 Brassica napus HOM05D003731 ORTHO05D004429 4.7e-23 111.3 72 76.4
BolC1t04257H Brassica oleracea HOM05D003731 ORTHO05D004429 4.7e-23 111.3 73 75.3
CDE05G0113 Ceratophyllum demersum HOM05D003731 ORTHO05D004429 4.7e-23 111.3 71 80.3
Nitab4.5_0006975g0010 Nicotiana tabacum HOM05D003731 ORTHO05D004429 4.7e-23 111.3 74 77.0
Ciclev10025825m.g Citrus clementina HOM05D003731 ORTHO05D004429 7.9e-23 110.5 76 72.4
Gohir.D05G114600 Gossypium hirsutum HOM05D003731 ORTHO05D004429 7.9e-23 110.5 74 75.7
Gorai.009G118800 Gossypium raimondii HOM05D003731 ORTHO05D004429 7.9e-23 110.5 74 75.7
BcaB02g11256 Brassica carinata HOM05D003731 ORTHO05D004429 1.0e-22 110.2 74 74.3
Nitab4.5_0001691g0190 Nicotiana tabacum HOM05D003731 ORTHO05D004429 1.0e-22 110.2 74 75.7
SGA_v2.0_scaffold71G23998 Striga asiatica HOM05D003731 ORTHO05D004429 1.0e-22 110.2 74 73.0
CARHR097000 Cardamine hirsuta HOM05D003731 ORTHO05D004429 1.4e-22 109.8 74 75.7
TWI18G0412 Tripterygium wilfordii HOM05D003731 ORTHO05D004429 1.4e-22 109.8 74 75.7
BraA01t03485Z Brassica rapa HOM05D003731 ORTHO05D004429 1.8e-22 109.4 72 75.0
Sp3g19100 Schrenkiella parvula HOM05D003731 ORTHO05D004429 1.8e-22 109.4 74 74.3
BcaB04g19144 Brassica carinata HOM05D003731 ORTHO05D004429 2.3e-22 109.0 73 74.0
Gohir.A05G114300 Gossypium hirsutum HOM05D003731 ORTHO05D004429 2.3e-22 109.0 74 74.3
SEGI_14249 Sequoiadendron giganteum HOM05D003731 ORTHO05D004429 2.3e-22 109.0 77 72.7
Lsat_1_v5_gn_8_80840 Lactuca sativa HOM05D003731 ORTHO05D004429 5.1e-22 107.8 75 70.7
Aa31LG8G7840 Aethionema arabicum HOM05D003731 ORTHO05D004429 6.7e-22 107.5 73 72.6
AagrBONN_evm.TU.Sc2ySwM_228.2381 Anthoceros agrestis HOM05D003731 ORTHO05D004429 1.5e-21 106.3 73 69.9
Lsat_1_v5_gn_5_137321 Lactuca sativa HOM05D003731 ORTHO05D004429 2.0e-21 105.9 74 70.3
unitig_32.g11007 Utricularia gibba HOM05D003731 ORTHO05D004429 3.3e-21 105.1 74 71.6
Mapoly0153s0003 Marchantia polymorpha HOM05D003731 ORTHO05D004429 4.8e-20 101.3 77 63.6
Duzib192G0075 Durio zibethinus HOM05D003731 ORTHO05D004429 6.3e-20 100.9 74 73.0
Thecc.06G059900 Theobroma cacao HOM05D003731 ORTHO05D004429 8.2e-20 100.5 74 74.3
SMO364G0508 Selaginella moellendorffii HOM05D003731 ORTHO05D004429 5.3e-19 97.8 78 62.8
HanXRQChr10g0311171 Helianthus annuus HOM05D003731 ORTHO05D004429 9.1e-19 97.1 74 63.5
ECA234G1217 Erigeron canadensis HOM05D003731 ORTHO05D004429 1.2e-18 96.7 74 62.2
Pp3c19_5780 Physcomitrium patens HOM05D003731 ORTHO05D004429 1.2e-18 96.7 74 62.2
ClCG09G001660 Citrullus lanatus HOM05D003731 ORTHO05D004429 2.9e-17 92.0 62 72.6
Pp3c18_21250 Physcomitrium patens HOM05D003731 ORTHO05D004429 6.5e-17 90.9 74 59.5
Cpa.g.sc461.2 Carica papaya HOM05D003731 ORTHO05D004429 2.7e-15 85.5 50 80.0
SEGI_29649 Sequoiadendron giganteum HOM05D003731 ORTHO05D004429 5.2e-14 81.3 78 59.0
Sc12g0011120 Simmondsia chinensis HOM05D003731 ORTHO05D004429 6.7e-14 80.9 45 86.7
Carub.0003s2104 Capsella rubella HOM05D003731 ORTHO05D004429 3.3e-13 78.6 45 82.2
Gohir.A02G090300 Gossypium hirsutum HOM05D003731 ORTHO05D004429 3.7e-12 75.1 48 75.0
BcaC08g44499 Brassica carinata HOM05D003731 ORTHO05D004429 9.1e-11 70.5 41 78.0
C06p19510 Brassica napus HOM05D003731 ORTHO05D004429 9.1e-11 70.5 41 78.0
CBR_g66806 Chara braunii HOM05D003731 ORTHO05D004429 1.2e-10 70.1 75 53.3
BraA02t08409Z Brassica rapa HOM05D003731 ORTHO05D004429 2.2e-09 65.9 41 73.2
HPP92_028042 Vanilla planifolia HOM05D000001 ORTHO05D014548 2.9e-09 65.5 31 96.8
Ah.15g094360 Amaranthus hybridus HOM05D003731 ORTHO05D004429 5.0e-09 64.7 76 51.3
Carub.0043s0002 Capsella rubella HOM05D003731 ORTHO05D004429 1.0e-06 57.0 53 60.4
arahy.Tifrunner.gnm1.ann1.7JFF3X Arachis hypogaea HOM05D003731 ORTHO05D004429 8.8e-06 53.9 58 56.9


User provided reference genes

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