Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 0.0e+00 1582.0 790 100.0
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 8.6e-268 927.2 793 60.5
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 1.8e-265 919.5 794 60.6
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 1.8e-265 919.5 794 60.6
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 3.1e-265 918.7 795 61.1
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 5.8e-264 914.4 794 59.7
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.4e-262 909.1 791 58.5
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 6.0e-261 904.4 793 59.5
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 8.6e-260 900.6 793 59.3
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 4.3e-259 898.3 892 53.7
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 4.3e-259 898.3 796 58.5
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 4.3e-259 898.3 794 59.6
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 7.3e-259 897.5 791 58.7
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 1.2e-258 896.7 793 59.0
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 1.2e-258 896.7 791 59.2
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 4.7e-258 894.8 793 59.1
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 4.7e-258 894.8 791 58.5
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 6.2e-258 894.4 792 60.1
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 1.1e-257 893.6 794 59.7
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 1.4e-257 893.3 797 58.3
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 4.0e-257 891.7 805 59.4
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 5.2e-257 891.3 813 59.3
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 2.6e-256 889.0 794 58.6
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 5.8e-256 887.9 782 58.3
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 7.6e-256 887.5 795 58.0
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 2.2e-255 885.9 793 59.4
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 1.4e-254 883.2 798 57.8
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.9e-254 882.9 790 57.1
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 2.4e-254 882.5 796 57.8
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 2.7e-253 879.0 790 57.6
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 3.5e-253 878.6 794 58.2
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 7.8e-253 877.5 796 57.3
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 1.7e-252 876.3 799 57.4
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 5.1e-252 874.8 798 57.8
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 1.9e-251 872.8 805 56.6
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 2.8e-250 869.0 793 57.8
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 1.8e-249 866.3 793 57.0
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 4.0e-249 865.1 821 55.5
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 6.9e-249 864.4 793 57.1
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 9.9e-248 860.5 794 57.1
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.2e-247 859.4 792 57.4
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 2.9e-247 859.0 793 55.9
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 1.9e-246 856.3 794 55.0
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 5.4e-246 854.7 885 53.4
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 2.7e-245 852.4 795 54.8
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.7e-244 849.7 790 55.1
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 5.1e-244 848.2 780 55.9
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 3.3e-243 845.5 780 55.8
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 9.6e-243 844.0 790 54.7
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 9.6e-243 844.0 793 57.1
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 9.6e-243 844.0 786 56.7
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 3.6e-242 842.0 799 54.1
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 3.6e-242 842.0 789 55.5
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 2.4e-241 839.3 855 52.7
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 3.1e-241 839.0 780 55.1
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 9.0e-241 837.4 791 55.6
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 2.6e-240 835.9 798 54.1
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.6e-240 835.9 787 55.0
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 1.3e-239 833.6 782 54.5
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.7e-239 833.2 764 56.9
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 3.8e-239 832.0 795 55.7
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.9e-238 829.7 780 54.2
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 4.2e-238 828.6 794 54.9
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 5.5e-238 828.2 798 54.9
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 5.5e-238 828.2 794 54.8
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 1.2e-237 827.0 793 54.5
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 2.1e-237 826.2 785 56.1
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 2.1e-237 826.2 799 54.7
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 6.0e-237 824.7 792 55.3
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.0e-236 823.9 896 51.5
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.8e-236 823.2 791 54.0
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 5.1e-236 821.6 793 53.2
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 4.3e-235 818.5 794 54.5
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 6.2e-234 814.7 791 54.7
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 1.1e-233 813.9 816 52.5
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 2.0e-232 809.7 792 53.0
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 7.6e-232 807.7 787 53.5
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 9.3e-230 800.8 786 55.2
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 6.0e-229 798.1 757 54.6
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 6.0e-229 798.1 787 55.5
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 1.8e-225 786.6 794 51.6
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 7.6e-224 781.2 786 52.7
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 3.2e-222 775.8 755 55.0
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 2.7e-213 746.1 797 49.8
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 3.3e-211 739.2 790 51.3
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 1.1e-206 724.2 736 54.1
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 1.0e-204 717.6 784 50.8
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 3.3e-174 616.3 793 45.3
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.0e-172 611.3 521 59.1
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 7.0e-169 598.6 541 56.9
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.9e-161 573.9 557 54.0
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.3e-159 567.0 490 60.0
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 7.8e-152 542.0 810 40.9
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.6e-150 535.8 474 57.8
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 5.6e-150 535.8 817 40.9
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.4e-137 494.6 609 46.6
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 4.0e-124 449.9 517 48.2
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 1.4e-116 424.9 763 35.9
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.6e-110 402.1 417 52.8
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.4e-100 371.7 849 31.6
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.6e-94 350.9 509 43.8
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 7.2e-81 306.2 453 42.4
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 7.0e-76 289.7 458 41.0
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 4.5e-75 287.0 392 42.6
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 8.5e-74 282.7 191 69.1
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.8e-71 272.7 269 55.4
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.1e-68 263.8 394 39.3
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 2.5e-65 254.6 220 56.8
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 3.0e-63 247.7 390 40.0
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 2.0e-62 245.0 263 51.3
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.3e-58 231.5 188 61.2
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 2.4e-52 211.5 775 26.1
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 1.5e-38 165.6 187 51.3
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 1.2e-35 156.0 496 26.6
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 8.6e-34 149.8 237 37.1
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 5.6e-33 147.1 114 57.9
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.2e-32 146.0 178 48.3
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 5.2e-31 140.6 509 25.7
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 2.6e-30 138.3 514 22.8
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.1e-28 132.9 257 35.4
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.7e-27 128.3 69 79.7
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 2.7e-27 128.3 109 54.1
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 6.6e-26 123.6 109 53.2
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 2.1e-24 118.6 86 61.6
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.1e-24 116.7 97 56.7
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.1e-23 114.8 97 56.7
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 1.7e-21 109.0 89 61.8
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 2.2e-21 108.6 86 64.0
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 4.9e-21 107.5 106 54.7
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.4e-20 105.1 97 52.6
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 2.4e-20 105.1 61 72.1
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.2e-20 104.4 62 75.8
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.7e-19 101.7 103 51.5
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-18 99.4 89 55.1
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 2.3e-18 98.6 56 76.8
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.1e-16 90.1 105 44.8
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.1e-16 90.1 76 56.6
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.4e-15 88.6 123 41.5
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.0e-14 85.5 62 67.7
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 1.7e-13 82.4 54 61.1
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 3.8e-13 81.3 116 41.4
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 6.4e-13 80.5 80 48.8
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 8.4e-13 80.1 55 67.3
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 3.2e-12 78.2 55 72.7
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.9e-11 73.6 68 54.4
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 6.7e-10 70.5 58 60.3
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 6.7e-10 70.5 58 60.3
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.5e-09 68.6 97 41.2
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.5e-09 68.6 61 54.1
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.5e-09 68.6 63 54.0
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.6e-08 65.9 61 54.1
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.9e-07 60.5 97 35.1
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 3.4e-06 58.2 31 77.4


User provided reference genes

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