Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015257 Vanilla planifolia HOM05D003206 ORTHO05D017170 2.9e-128 461.8 225 100.0
HPP92_009998 Vanilla planifolia HOM05D003206 ORTHO05D017170 1.7e-56 223.4 111 99.1
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 9.0e-37 157.9 305 35.7
Haze_12952 Corylus avellana HOM05D003206 ORTHO05D005207 1.7e-35 153.7 348 34.2
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 2.2e-35 153.3 348 34.2
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 2.9e-35 152.9 348 33.9
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 3.8e-35 152.5 348 33.9
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 5.0e-35 152.1 348 33.3
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 5.0e-35 152.1 348 33.3
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 5.0e-35 152.1 348 33.3
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 5.0e-35 152.1 348 33.3
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 5.0e-35 152.1 348 33.3
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 5.0e-35 152.1 348 33.3
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 5.0e-35 152.1 348 33.3
Atru.chr1.2868 Acer truncatum HOM05D003206 ORTHO05D005207 6.5e-35 151.8 348 33.9
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 6.5e-35 151.8 348 33.6
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 6.5e-35 151.8 357 33.9
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 6.5e-35 151.8 348 33.6
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 6.5e-35 151.8 348 33.6
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.6
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.3
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.6
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.6
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.6
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.6
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.6
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.6
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.6
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.3
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 8.4e-35 151.4 348 33.3
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 1.1e-34 151.0 348 33.6
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 1.1e-34 151.0 348 33.0
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.1e-34 151.0 348 33.6
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 1.1e-34 151.0 348 33.3
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 1.1e-34 151.0 348 32.8
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 1.4e-34 150.6 348 33.6
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 1.4e-34 150.6 348 33.6
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 1.4e-34 150.6 348 33.3
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 1.4e-34 150.6 351 33.9
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 1.9e-34 150.2 348 33.0
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 1.9e-34 150.2 327 33.9
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 1.9e-34 150.2 353 32.9
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 2.5e-34 149.8 348 33.3
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 2.5e-34 149.8 348 33.3
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 2.5e-34 149.8 348 32.5
Thhalv10018399m.g Eutrema salsugineum HOM05D003206 ORTHO05D005207 2.5e-34 149.8 348 33.3
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 2.5e-34 149.8 353 32.9
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 3.2e-34 149.4 350 33.1
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 3.2e-34 149.4 348 33.0
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 3.2e-34 149.4 348 33.3
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 4.2e-34 149.1 348 33.0
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.2e-34 149.1 348 33.3
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 4.2e-34 149.1 348 33.6
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 4.2e-34 149.1 348 33.3
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 4.2e-34 149.1 348 33.3
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 4.2e-34 149.1 348 32.8
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 4.2e-34 149.1 348 33.0
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 5.5e-34 148.7 351 32.5
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 5.5e-34 148.7 357 33.3
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 5.5e-34 148.7 348 32.8
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 5.5e-34 148.7 357 32.8
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 7.2e-34 148.3 348 33.0
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 7.2e-34 148.3 357 32.2
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 7.2e-34 148.3 348 33.6
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 9.3e-34 147.9 349 33.5
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 9.3e-34 147.9 348 33.0
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 9.3e-34 147.9 348 33.0
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 9.3e-34 147.9 348 32.8
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 1.2e-33 147.5 348 33.3
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 1.6e-33 147.1 348 33.0
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 1.6e-33 147.1 348 32.8
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 1.6e-33 147.1 348 32.8
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 2.1e-33 146.7 348 33.3
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 2.1e-33 146.7 348 33.0
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 2.1e-33 146.7 359 31.8
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 2.7e-33 146.4 348 33.0
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 3.5e-33 146.0 350 33.1
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 3.5e-33 146.0 348 32.5
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 3.5e-33 146.0 348 32.2
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 3.5e-33 146.0 348 32.8
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 3.5e-33 146.0 348 32.8
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 4.6e-33 145.6 348 32.2
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 4.6e-33 145.6 348 32.8
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 4.6e-33 145.6 348 32.5
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 6.1e-33 145.2 348 33.6
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 6.1e-33 145.2 348 32.5
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 6.1e-33 145.2 351 33.3
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 7.9e-33 144.8 348 32.5
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 7.9e-33 144.8 348 33.0
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 1.0e-32 144.4 348 32.5
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 1.0e-32 144.4 348 32.5
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 1.0e-32 144.4 350 33.1
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 1.3e-32 144.1 357 31.7
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 1.3e-32 144.1 348 31.9
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 1.8e-32 143.7 348 32.8
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 2.3e-32 143.3 348 32.2
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 2.3e-32 143.3 302 34.1
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 2.3e-32 143.3 348 32.5
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 2.3e-32 143.3 363 30.3
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 2.3e-32 143.3 357 32.8
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 3.0e-32 142.9 348 31.9
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 3.0e-32 142.9 356 32.9
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 3.0e-32 142.9 348 31.6
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 5.1e-32 142.1 348 31.9
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 5.1e-32 142.1 348 31.9
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 5.1e-32 142.1 350 32.6
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 6.7e-32 141.7 348 32.2
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 6.7e-32 141.7 348 31.3
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 8.7e-32 141.4 357 31.4
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 1.1e-31 141.0 348 31.9
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.1e-31 141.0 348 32.5
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 1.5e-31 140.6 348 31.3
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 1.5e-31 140.6 346 31.2
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 4.3e-31 139.0 348 32.5
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 5.7e-31 138.7 380 31.3
QL05p032218 Quercus lobata HOM05D003206 ORTHO05D005207 2.2e-30 136.7 350 31.1
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 2.8e-30 136.3 348 30.7
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 3.7e-30 136.0 346 32.1
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 4.8e-30 135.6 346 30.3
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 4.8e-30 135.6 348 31.0
Zm00001eb068580 Zea mays HOM05D003206 ORTHO05D005207 6.3e-30 135.2 348 31.6
CANSAT56G2846 Cannabis sativa HOM05D003206 ORTHO05D005207 8.2e-30 134.8 348 31.3
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 1.1e-29 134.4 357 31.4
Lalb_Chr04g0262301 Lupinus albus HOM05D003206 ORTHO05D005207 1.4e-29 134.0 348 31.0
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 1.8e-29 133.7 348 30.5
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 3.1e-29 132.9 365 31.2
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 4.1e-29 132.5 350 30.6
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 7.7e-28 128.3 357 29.4
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 3.8e-27 125.9 357 29.7
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 6.5e-27 125.2 348 29.6
AagrBONN_evm.TU.Sc2ySwM_228.3101 Anthoceros agrestis HOM05D003206 ORTHO05D005207 8.5e-27 124.8 348 29.3
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 1.4e-26 124.0 336 32.4
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 1.4e-26 124.0 355 30.4
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 5.5e-26 122.1 280 33.6
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 2.1e-25 120.2 348 31.9
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 7.9e-25 118.2 350 30.0
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 1.4e-21 107.5 350 28.6
Cfa003309 Carpinus fangiana HOM05D003206 ORTHO05D005207 2.4e-21 106.7 102 57.8
BcaC03g15966 Brassica carinata HOM05D003206 ORTHO05D005207 3.4e-20 102.8 143 44.1
unitig_27.g24951 Utricularia gibba HOM05D003206 ORTHO05D017170 5.9e-20 102.1 72 68.1
Sc10g0006040 Simmondsia chinensis HOM05D003206 ORTHO05D005207 7.7e-20 101.7 143 44.1
TAR626G0098 Trochodendron aralioides HOM05D003206 ORTHO05D005207 1.3e-19 100.9 143 43.4
Cfa001939 Carpinus fangiana HOM05D003206 ORTHO05D005207 2.9e-19 99.8 143 44.8
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 2.9e-19 99.8 297 29.6
Ciclev10027554m.g Citrus clementina HOM05D003206 ORTHO05D005207 3.8e-19 99.4 133 45.9
Mapoly0004s0005 Marchantia polymorpha HOM05D003206 ORTHO05D005207 5.0e-19 99.0 348 27.6
Aqoxy133s002 Aquilegia oxysepala HOM05D003206 ORTHO05D017170 8.5e-19 98.2 72 62.5
Aqoxy7G03605 Aquilegia oxysepala HOM05D003206 ORTHO05D017170 8.5e-19 98.2 79 58.2
Ciclev10020202m.g Citrus clementina HOM05D003206 ORTHO05D005207 1.4e-18 97.4 321 29.6
PSO478G0299 Papaver somniferum HOM05D003206 ORTHO05D005207 1.9e-18 97.1 143 42.7
Actinidia01729 Actinidia chinensis HOM05D003206 ORTHO05D017170 2.5e-18 96.7 72 62.5
arahy.Tifrunner.gnm1.ann1.GS37TA Arachis hypogaea HOM05D003206 ORTHO05D005207 3.2e-18 96.3 143 42.7
BcaC03g17488 Brassica carinata HOM05D003206 ORTHO05D016781 3.2e-18 96.3 101 54.5
BcaC07g39914 Brassica carinata HOM05D003206 ORTHO05D005207 9.4e-18 94.7 143 41.3
Oeu004210.1 Olea europaea HOM05D003206 ORTHO05D005207 1.6e-17 94.0 143 40.6
A09p11980 Brassica napus HOM05D003206 ORTHO05D016781 2.1e-17 93.6 217 36.9
FAN09G0009 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.1e-17 92.0 72 58.3
Manes.11G060045 Manihot esculenta HOM05D003206 ORTHO05D005207 8.8e-16 88.2 75 61.3
Aqoxy133s001 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 1.1e-15 87.8 136 40.4
CBR_g36912 Chara braunii HOM05D003206 ORTHO05D005207 1.5e-15 87.4 143 38.5
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 2.0e-15 87.0 68 60.3
CBR_g30419 Chara braunii HOM05D003206 ORTHO05D005207 4.4e-15 85.9 143 37.8
MCO09G056 Micromonas commoda HOM05D003206 ORTHO05D005207 4.4e-15 85.9 346 25.1
Ciclev10024258m.g Citrus clementina HOM05D003206 ORTHO05D005207 2.8e-14 83.2 129 40.3
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 4.8e-14 82.4 75 60.0
unitig_27.g24952 Utricularia gibba HOM05D003206 ORTHO05D002964 1.1e-13 81.3 75 57.3
A03p18490 Brassica napus HOM05D003206 ORTHO05D016781 2.4e-13 80.1 73 58.9
PSO063G0253 Papaver somniferum HOM05D003206 ORTHO05D016781 5.3e-13 79.0 75 56.0
CSS0045117 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 2.6e-12 76.6 135 37.8
Haze_20327 Corylus avellana HOM05D003206 ORTHO05D005207 3.5e-12 76.3 75 56.0
ATR0810G084 Amborella trichopoda HOM05D003206 ORTHO05D017170 4.5e-12 75.9 68 52.9
HPP92_010009 Vanilla planifolia HOM05D003206 ORTHO05D430524 8.5e-11 71.6 34 100.0
BolC3t19546H Brassica oleracea HOM05D003206 ORTHO05D016781 3.6e-09 66.2 59 57.6
Cre04.g224150 Chlamydomonas reinhardtii HOM05D003206 ORTHO05D005207 1.0e-08 64.7 87 42.5
CSS0014706 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D017170 1.8e-08 63.9 64 51.6
PRCOL_00002221 Prasinoderma coloniale HOM05D003206 ORTHO05D005207 3.0e-08 63.2 143 30.1
BolC2t11510H Brassica oleracea HOM05D003206 ORTHO05D016781 4.0e-08 62.8 59 57.6
Lsat_1_v5_gn_8_93800 Lactuca sativa HOM05D003206 ORTHO05D024104 8.8e-08 61.6 44 59.1
Haze_16585 Corylus avellana HOM05D003206 ORTHO05D005207 2.0e-07 60.5 113 40.7
CSS0005656 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D017170 1.3e-06 57.8 64 46.9
BcaC08g47591 Brassica carinata HOM05D003206 ORTHO05D014283 2.2e-06 57.0 50 58.0


User provided reference genes

Program Settings