Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 4.7e-88 327.8 160 100.0
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 4.6e-59 231.5 116 97.4
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 5.4e-28 128.3 107 56.1
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 1.3e-26 123.6 107 55.1
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.3e-26 123.6 107 54.2
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 3.0e-26 122.5 107 52.3
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 3.0e-26 122.5 107 52.3
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 3.9e-26 122.1 107 51.4
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 3.9e-26 122.1 107 51.4
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 6.7e-26 121.3 107 54.2
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 6.7e-26 121.3 107 53.3
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 1.1e-25 120.6 107 52.3
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.5e-25 120.2 107 50.5
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.5e-25 120.2 107 54.2
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.9e-25 119.8 109 50.5
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.9e-25 119.8 107 56.1
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 4.3e-25 118.6 109 52.3
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 5.6e-25 118.2 109 52.3
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 5.6e-25 118.2 107 51.4
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 9.6e-25 117.5 107 48.6
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 2.1e-24 116.3 107 50.5
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 2.8e-24 115.9 109 50.5
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.8e-24 115.2 107 50.5
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 4.8e-24 115.2 109 55.0
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 6.2e-24 114.8 107 50.5
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 6.2e-24 114.8 107 50.5
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 6.2e-24 114.8 107 50.5
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 6.2e-24 114.8 107 50.5
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 6.2e-24 114.8 107 50.5
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 8.1e-24 114.4 107 50.5
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 8.1e-24 114.4 109 50.5
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 1.1e-23 114.0 108 50.9
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.4e-23 113.6 122 45.9
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 6.9e-23 111.3 109 46.8
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 6.9e-23 111.3 107 46.7
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 9.0e-23 110.9 109 46.8
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.5e-22 110.2 107 47.7
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.5e-22 110.2 109 45.9
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 1.5e-22 110.2 106 49.1
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.0e-22 109.8 109 45.9
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.0e-22 109.8 107 47.7
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 2.0e-22 109.8 109 49.5
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.6e-22 109.4 107 47.7
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.6e-22 109.4 109 47.7
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.6e-22 109.4 109 47.7
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 2.6e-22 109.4 109 46.8
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 2.6e-22 109.4 113 45.1
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 3.4e-22 109.0 109 46.8
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 4.5e-22 108.6 109 45.0
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 5.8e-22 108.2 109 48.6
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 7.6e-22 107.8 122 42.6
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 7.6e-22 107.8 109 45.0
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 7.6e-22 107.8 109 46.8
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 9.9e-22 107.5 109 45.0
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 9.9e-22 107.5 109 45.0
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 9.9e-22 107.5 109 45.0
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 9.9e-22 107.5 109 45.0
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 9.9e-22 107.5 122 42.6
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 1.3e-21 107.1 109 48.6
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 1.7e-21 106.7 109 47.7
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 1.7e-21 106.7 107 48.6
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.7e-21 106.7 107 46.7
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 2.2e-21 106.3 122 41.8
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 2.2e-21 106.3 109 45.9
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 2.2e-21 106.3 107 49.5
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 2.9e-21 105.9 109 45.0
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 3.8e-21 105.5 109 47.7
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 3.8e-21 105.5 109 47.7
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 3.8e-21 105.5 109 47.7
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 3.8e-21 105.5 107 45.8
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 4.9e-21 105.1 107 47.7
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 4.9e-21 105.1 107 48.6
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 6.4e-21 104.8 107 48.6
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 6.4e-21 104.8 109 46.8
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 6.4e-21 104.8 106 46.2
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 6.4e-21 104.8 110 49.1
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 6.4e-21 104.8 109 46.8
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.1e-20 104.0 112 42.9
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.9e-20 103.2 107 45.8
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 2.5e-20 102.8 107 45.8
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 4.2e-20 102.1 109 45.0
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 5.5e-20 101.7 109 45.0
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 5.5e-20 101.7 109 45.0
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 5.5e-20 101.7 109 42.2
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 5.5e-20 101.7 106 45.3
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 5.5e-20 101.7 106 45.3
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 7.1e-20 101.3 109 45.0
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 9.3e-20 100.9 106 45.3
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 2.1e-19 99.8 108 43.5
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 2.7e-19 99.4 107 45.8
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 2.7e-19 99.4 118 40.7
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 4.6e-19 98.6 107 46.7
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 4.6e-19 98.6 107 44.9
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.0e-18 97.4 109 43.1
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 2.3e-18 96.3 114 43.9
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 3.0e-18 95.9 105 44.8
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.1e-17 94.0 97 46.4
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 1.5e-17 93.6 112 47.3
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 2.5e-17 92.8 150 34.7
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 3.3e-17 92.4 103 42.7
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 5.6e-17 91.7 108 44.4
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 5.6e-17 91.7 108 44.4
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 7.4e-17 91.3 104 40.4
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 1.6e-16 90.1 127 38.6
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 1.6e-16 90.1 117 38.5
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 2.1e-16 89.7 123 43.9
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 2.1e-16 89.7 92 47.8
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 3.7e-16 89.0 103 40.8
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 4.8e-16 88.6 105 40.0
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 6.2e-16 88.2 103 41.7
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.1e-15 87.4 94 43.6
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 2.4e-15 86.3 103 39.8
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 3.1e-15 85.9 106 39.6
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 4.0e-15 85.5 72 56.9
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 9.0e-15 84.3 111 42.3
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 9.0e-15 84.3 98 44.9
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 9.0e-15 84.3 104 37.5
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 1.5e-14 83.6 103 38.8
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 2.0e-14 83.2 98 43.9
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 3.4e-14 82.4 144 31.9
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 3.4e-14 82.4 122 36.9
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 4.5e-14 82.0 108 40.7
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 5.8e-14 81.6 116 38.8
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 2.9e-13 79.3 133 35.3
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 6.5e-13 78.2 98 42.9
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 2.7e-11 72.8 107 40.2
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 3.5e-11 72.4 98 39.8
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 4.6e-11 72.0 109 40.4
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 1.8e-10 70.1 82 47.6
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.5e-09 67.0 58 48.3
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 3.3e-09 65.9 75 38.7
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.4e-07 60.5 61 47.5
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 2.6e-06 56.2 97 30.9
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 1.0e-05 54.3 50 44.0


User provided reference genes

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