Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 0.0e+00 3221.4 1601 100.0
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 0.0e+00 2112.0 1539 69.1
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 0.0e+00 2071.6 1538 68.2
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 0.0e+00 2069.3 1540 67.8
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 0.0e+00 2065.0 1537 67.7
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 0.0e+00 2061.6 1537 67.3
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 0.0e+00 2053.9 1541 67.4
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 0.0e+00 2045.4 1539 67.2
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 0.0e+00 2044.6 1538 67.5
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2040.4 1538 66.5
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 0.0e+00 2040.0 1547 66.4
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 2039.2 1509 68.1
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 2033.5 1538 66.8
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 2033.1 1520 67.8
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 2031.9 1539 66.6
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 0.0e+00 2031.9 1534 66.6
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 2030.0 1541 66.4
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 2028.8 1537 66.5
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 2027.3 1538 66.6
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 0.0e+00 2026.5 1538 66.3
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2025.8 1550 65.9
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 2025.8 1538 65.9
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 0.0e+00 2025.0 1541 66.8
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 2021.1 1537 66.2
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 2019.6 1540 66.2
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 0.0e+00 2017.7 1537 66.2
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 0.0e+00 2016.9 1537 66.4
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 2012.7 1546 65.9
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 0.0e+00 2010.0 1540 66.3
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 0.0e+00 2003.8 1541 65.9
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 2002.6 1540 65.9
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 0.0e+00 2001.9 1540 66.2
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 0.0e+00 1998.8 1544 65.7
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 0.0e+00 1993.8 1534 66.5
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 0.0e+00 1993.0 1541 66.1
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 0.0e+00 1992.2 1537 65.6
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 0.0e+00 1991.5 1539 65.2
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 0.0e+00 1989.9 1539 65.8
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 0.0e+00 1988.0 1539 65.6
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 0.0e+00 1984.9 1552 65.5
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 1983.4 1537 65.1
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 0.0e+00 1983.0 1537 65.3
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 0.0e+00 1981.5 1537 65.4
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 0.0e+00 1981.1 1537 65.3
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 1979.5 1538 65.1
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 0.0e+00 1978.4 1540 64.9
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 0.0e+00 1978.4 1537 64.5
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 1975.7 1539 65.1
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 0.0e+00 1974.9 1541 65.0
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 1974.1 1537 64.9
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 0.0e+00 1973.0 1547 64.7
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 0.0e+00 1969.9 1535 64.8
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 0.0e+00 1966.8 1551 64.6
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 0.0e+00 1963.7 1537 64.9
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 0.0e+00 1959.9 1539 64.7
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1959.1 1543 64.7
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 0.0e+00 1955.3 1561 64.4
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 0.0e+00 1954.5 1539 64.5
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 0.0e+00 1948.3 1651 61.4
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 1947.6 1553 64.4
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1947.2 1545 64.1
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 0.0e+00 1945.2 1544 63.9
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1939.9 1542 63.9
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1936.4 1545 63.6
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 0.0e+00 1929.8 1542 64.6
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 0.0e+00 1922.9 1542 63.3
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1922.9 1544 63.3
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 0.0e+00 1918.3 1539 62.9
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1912.9 1550 63.1
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1904.4 1547 62.8
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 0.0e+00 1899.8 1538 62.4
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 0.0e+00 1899.0 1539 63.2
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 0.0e+00 1893.2 1548 62.3
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 0.0e+00 1889.0 1438 66.4
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1888.2 1540 62.9
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 1875.9 1540 62.5
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 0.0e+00 1870.5 1538 62.5
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 0.0e+00 1868.6 1560 61.4
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 1865.1 1543 62.1
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 0.0e+00 1865.1 1567 61.3
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 1864.7 1597 60.4
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 0.0e+00 1853.6 1461 64.8
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 1843.6 1540 62.1
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 0.0e+00 1833.5 1694 57.5
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 0.0e+00 1820.4 1369 67.4
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 0.0e+00 1816.6 2017 50.4
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1766.9 1951 50.5
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1762.3 1511 61.0
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1740.3 1539 58.6
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1733.8 1533 57.8
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1726.5 1536 57.8
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1670.2 1237 68.1
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1657.5 1539 55.9
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1650.6 1270 66.5
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1650.6 1270 66.5
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1632.5 1246 66.9
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1617.8 1537 54.5
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 0.0e+00 1600.9 1246 66.1
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 0.0e+00 1536.5 1247 62.8
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 0.0e+00 1479.5 1548 51.5
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1473.0 1374 56.3
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 0.0e+00 1452.6 1495 52.1
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 0.0e+00 1380.9 1573 48.0
VMungo0647G2469 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1364.4 1110 62.2
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1341.3 1246 55.3
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 0.0e+00 1297.0 1535 46.4
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1279.6 937 68.6
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 0.0e+00 1249.2 1637 44.6
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 0.0e+00 1222.6 856 71.7
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1185.2 943 62.2
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1167.5 931 62.5
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1156.7 859 67.9
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 0.0e+00 1149.8 1343 47.1
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1129.4 1052 56.5
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1127.5 994 60.8
Peaxi162Scf00105g01316 Petunia axillaris HOM05D003461 ORTHO05D004386 0.0e+00 1115.5 876 64.3
HPP92_015178 Vanilla planifolia HOM05D003461 ORTHO05D004386 5.1e-243 845.9 639 70.7
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 1.8e-227 794.3 544 73.9
SEGI_10354 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 4.0e-211 740.0 664 55.4
Glyma.14G129500 Glycine max HOM05D003461 ORTHO05D004386 1.3e-206 724.9 645 57.1
CDE07G1701 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 2.3e-195 687.6 522 64.8
AUR62011223 Chenopodium quinoa HOM05D003461 ORTHO05D004386 5.2e-187 659.8 678 52.2
MD15G1115000 Malus domestica HOM05D003461 ORTHO05D004386 4.3e-181 640.2 602 54.7
SEGI_20580 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 1.4e-160 572.0 636 47.8
Nitab4.5_0000125g0120 Nicotiana tabacum HOM05D003461 ORTHO05D004386 1.9e-160 571.6 524 55.0
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 7.3e-149 533.1 1092 33.1
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 2.1e-140 505.0 349 75.6
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 5.1e-134 483.8 391 66.2
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 2.6e-130 471.5 275 86.5
SEGI_09564 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 7.7e-114 416.8 487 47.6
TPR.G27605 Trifolium pratense HOM05D003461 ORTHO05D004386 3.7e-108 397.9 421 49.4
AL4G17190 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 1.2e-98 366.3 277 64.6
Nitab4.5_0009600g0020 Nicotiana tabacum HOM05D003461 ORTHO05D004386 4.7e-95 354.4 295 60.0
Solyc08g067870.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 1.4e-94 352.8 295 59.7
HPP92_015177 Vanilla planifolia HOM05D003461 ORTHO05D004386 9.4e-88 330.1 184 93.5
Peaxi162Scf00105g01315 Petunia axillaris HOM05D003461 ORTHO05D004386 1.8e-75 289.3 295 52.2
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 7.8e-58 230.7 146 82.2
VMungo1309G0474 Vigna mungo HOM05D003461 ORTHO05D004386 2.0e-53 216.1 168 58.9
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 3.2e-51 208.8 117 90.6
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 6.8e-46 191.0 107 90.7
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 1.7e-36 159.8 678 23.2
Hund03002 Selenicereus undatus HOM05D003461 ORTHO05D004386 3.9e-33 148.7 119 62.2
Lsat_1_v5_gn_9_70541 Lactuca sativa HOM05D003461 ORTHO05D004386 1.5e-32 146.7 141 56.0
VMungo0647G1896 Vigna mungo HOM05D003461 ORTHO05D004386 8.1e-31 141.0 122 58.2
SEGI_12849 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 1.2e-29 137.1 96 74.0
CiPaw.07G217500 Carya illinoinensis HOM05D003461 ORTHO05D004386 1.9e-27 129.8 96 64.6
Lsat_1_v5_gn_4_41661 Lactuca sativa HOM05D003461 ORTHO05D004386 3.2e-27 129.0 99 64.6
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 5.5e-27 128.3 118 56.8
Lsat_1_v5_gn_9_53460 Lactuca sativa HOM05D003461 ORTHO05D004386 1.8e-25 123.2 99 66.7
Gohir.D10G105800 Gossypium hirsutum HOM05D003461 ORTHO05D004386 2.5e-24 119.4 81 69.1
Gorai.013G159000 Gossypium raimondii HOM05D003461 ORTHO05D004386 4.3e-24 118.6 84 67.9
VMungo0647G0881 Vigna mungo HOM05D003461 ORTHO05D004386 1.6e-23 116.7 134 50.7
Gohir.D13G142100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 3.7e-23 115.5 82 67.1
Cfa013212 Carpinus fangiana HOM05D003461 ORTHO05D004386 4.8e-23 115.2 119 48.7
Lsat_1_v5_gn_0_34461 Lactuca sativa HOM05D003461 ORTHO05D004386 4.8e-23 115.2 68 73.5
Gohir.D01G114000 Gossypium hirsutum HOM05D003461 ORTHO05D004386 2.0e-21 109.8 71 73.2
RcHm_v2.0_Chr1g0381071 Rosa chinensis HOM05D003461 ORTHO05D004386 3.2e-19 102.4 57 86.0
MBI14_g07933_MAGBIO Magnolia biondii HOM05D001400 ORTHO05D001795 7.1e-19 101.3 135 45.2
RcHm_v2.0_Chr4g0412921 Rosa chinensis HOM05D003461 ORTHO05D004386 2.1e-18 99.8 57 84.2
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 1.0e-17 97.4 89 56.2
VMungo1127G1644 Vigna mungo HOM05D003461 ORTHO05D004386 7.4e-16 91.3 64 62.5
Cpa.g.sc91.8 Carica papaya HOM05D003461 ORTHO05D004386 3.7e-15 89.0 51 72.5
Potri.006G246401 Populus trichocarpa HOM05D003461 ORTHO05D004386 3.4e-13 82.4 54 77.8
Lsat_1_v5_gn_3_38460 Lactuca sativa HOM05D003461 ORTHO05D014082 5.9e-13 81.6 53 75.5
Lsat_1_v5_gn_9_113480 Lactuca sativa HOM05D003461 ORTHO05D004386 1.3e-12 80.5 47 83.0
Sabra18G0035500 Salix brachista HOM05D003461 ORTHO05D004386 5.0e-12 78.6 81 51.9
MBI03_g45443_MAGBIO Magnolia biondii HOM05D003461 ORTHO05D004386 7.4e-08 64.7 86 45.3
Hma1.2p1_0175F.1_g077280 Hydrangea macrophylla HOM05D003461 ORTHO05D004386 1.4e-06 60.5 28 92.9


User provided reference genes

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