Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015106 Vanilla planifolia HOM05D005354 ORTHO05D006315 1.3e-114 416.4 214 100.0
HPP92_015115 Vanilla planifolia HOM05D005354 ORTHO05D006315 1.3e-112 409.8 214 97.7
Gohir.D03G162600 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.4e-79 300.1 214 67.8
Gorai.003G171200 Gossypium raimondii HOM05D005354 ORTHO05D006315 1.4e-79 300.1 214 67.8
Gohir.A03G008300 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.5e-78 296.6 214 67.3
Thecc.03G252000 Theobroma cacao HOM05D005354 ORTHO05D006315 5.9e-78 294.7 214 67.8
Rhsim07G0108200 Rhododendron simsii HOM05D005354 ORTHO05D006315 7.7e-78 294.3 214 68.7
Actinidia27464 Actinidia chinensis HOM05D005354 ORTHO05D006315 8.5e-77 290.8 214 66.4
Dinv21636 Davidia involucrata HOM05D005354 ORTHO05D006315 8.5e-77 290.8 214 66.4
Lj2A217G28 Lonicera japonica HOM05D005354 ORTHO05D006315 1.4e-76 290.0 214 66.8
QL12p012213 Quercus lobata HOM05D005354 ORTHO05D006315 1.9e-76 289.7 211 67.8
TWI60G0726 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 1.9e-76 289.7 214 67.3
MBI04_g09494_MAGBIO Magnolia biondii HOM05D005354 ORTHO05D006315 3.2e-76 288.9 214 69.2
PGSC0003DMG400004811 Solanum tuberosum HOM05D005354 ORTHO05D006315 3.2e-76 288.9 213 65.3
TWI81G0349 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 4.2e-76 288.5 214 65.9
ATR0317G109 Amborella trichopoda HOM05D005354 ORTHO05D006315 7.2e-76 287.7 215 68.4
Solyc08g078660.3 Solanum lycopersicum HOM05D005354 ORTHO05D006315 7.2e-76 287.7 214 65.0
Sopen08g027140 Solanum pennellii HOM05D005354 ORTHO05D006315 1.2e-75 287.0 214 65.0
Os10g0507800 Oryza sativa ssp. japonica HOM05D005354 ORTHO05D006315 1.6e-75 286.6 214 66.4
vmacro14088 Vaccinium macrocarpon HOM05D005354 ORTHO05D006315 1.6e-75 286.6 212 68.9
Nitab4.5_0000312g0100 Nicotiana tabacum HOM05D005354 ORTHO05D006315 2.1e-75 286.2 214 64.5
CiPaw.11G153900 Carya illinoinensis HOM05D005354 ORTHO05D006315 2.7e-75 285.8 214 65.4
RcHm_v2.0_Chr7g0203181 Rosa chinensis HOM05D005354 ORTHO05D006315 2.7e-75 285.8 214 65.4
Sc01g0008460 Simmondsia chinensis HOM05D005354 ORTHO05D006315 3.6e-75 285.4 213 63.8
GSVIVG01001321001 Vitis vinifera HOM05D005354 ORTHO05D006315 3.6e-75 285.4 212 66.5
CSS0011263 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 6.1e-75 284.6 214 65.4
Nitab4.5_0007598g0020 Nicotiana tabacum HOM05D005354 ORTHO05D006315 6.1e-75 284.6 214 65.0
Ciclev10019626m.g Citrus clementina HOM05D005354 ORTHO05D006315 2.3e-74 282.7 214 65.0
Oeu040216.1 Olea europaea HOM05D005354 ORTHO05D006315 2.3e-74 282.7 214 63.6
Nn1g01007 Nelumbo nucifera HOM05D005354 ORTHO05D006315 3.9e-74 282.0 214 65.0
CDE04G0953 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 5.1e-74 281.6 214 64.0
Dinv39144 Davidia involucrata HOM05D005354 ORTHO05D006315 6.7e-74 281.2 212 65.6
Manes.01G080300 Manihot esculenta HOM05D005354 ORTHO05D006315 8.8e-74 280.8 214 65.9
Atru.chr9.1319 Acer truncatum HOM05D005354 ORTHO05D006315 1.1e-73 280.4 212 65.6
Zm00001eb043970 Zea mays HOM05D005354 ORTHO05D006315 1.1e-73 280.4 214 64.5
CAN.G1367.6 Capsicum annuum HOM05D005354 ORTHO05D006315 3.3e-73 278.9 212 63.7
Cc08_g12480 Coffea canephora HOM05D005354 ORTHO05D006315 3.3e-73 278.9 214 62.6
MD06G1057900 Malus domestica HOM05D005354 ORTHO05D006315 4.4e-73 278.5 214 65.0
Aqoxy7G00759 Aquilegia oxysepala HOM05D005354 ORTHO05D006315 7.4e-73 277.7 211 66.8
EL10Ac5g13072 Beta vulgaris HOM05D005354 ORTHO05D006315 7.4e-73 277.7 214 64.5
FvH4_5g18830 Fragaria vesca HOM05D005354 ORTHO05D006315 9.7e-73 277.3 214 64.5
PGR042G1820 Punica granatum HOM05D005354 ORTHO05D006315 9.7e-73 277.3 213 63.8
FAN08G0881 Fragaria x ananassa HOM05D005354 ORTHO05D006315 1.3e-72 276.9 214 65.0
FAN04G2371 Fragaria x ananassa HOM05D005354 ORTHO05D006315 1.7e-72 276.6 214 64.5
arahy.Tifrunner.gnm1.ann1.BT71C1 Arachis hypogaea HOM05D005354 ORTHO05D006315 2.2e-72 276.2 213 64.3
arahy.Tifrunner.gnm1.ann1.LCH2QT Arachis hypogaea HOM05D005354 ORTHO05D006315 2.2e-72 276.2 213 64.3
CsaV3_3G002740 Cucumis sativus L. HOM05D005354 ORTHO05D006315 2.8e-72 275.8 208 64.4
FAN13G0823 Fragaria x ananassa HOM05D005354 ORTHO05D006315 2.8e-72 275.8 214 64.5
ClCG10G002710 Citrullus lanatus HOM05D005354 ORTHO05D006315 3.7e-72 275.4 208 64.9
THA.LOC104815494 Tarenaya hassleriana HOM05D005354 ORTHO05D006315 3.7e-72 275.4 214 65.0
COL.COLO4_37182 Corchorus olitorius HOM05D005354 ORTHO05D006315 6.3e-72 274.6 213 63.4
PSO017G6196 Papaver somniferum HOM05D005354 ORTHO05D006315 1.4e-71 273.5 212 65.6
Prupe.5G069200 Prunus persica HOM05D005354 ORTHO05D006315 1.4e-71 273.5 214 64.0
Migut.E00837 Erythranthe guttata HOM05D005354 ORTHO05D006315 2.4e-71 272.7 216 63.0
FAN18G0938 Fragaria x ananassa HOM05D005354 ORTHO05D006315 2.4e-71 272.7 215 64.2
FAN18G2353 Fragaria x ananassa HOM05D005354 ORTHO05D006315 2.4e-71 272.7 215 64.2
Manes.02G039200 Manihot esculenta HOM05D005354 ORTHO05D006315 3.1e-71 272.3 213 64.3
Potri.001G158200 Populus trichocarpa HOM05D005354 ORTHO05D006315 7.0e-71 271.2 214 63.6
CANSAT21G0216 Cannabis sativa HOM05D005354 ORTHO05D006315 9.1e-71 270.8 215 62.8
PSO170G3683 Papaver somniferum HOM05D005354 ORTHO05D006315 9.1e-71 270.8 212 64.6
Sed0003796 Sechium edule HOM05D005354 ORTHO05D006315 9.1e-71 270.8 208 63.9
MSTRG.25527 Avicennia marina HOM05D005354 ORTHO05D006315 1.2e-70 270.4 213 61.5
TAR629G2416 Trochodendron aralioides HOM05D005354 ORTHO05D006315 1.2e-70 270.4 211 65.4
Prupe.5G069100 Prunus persica HOM05D005354 ORTHO05D006315 2.0e-70 269.6 214 63.6
Haze_07917 Corylus avellana HOM05D005354 ORTHO05D006315 2.6e-70 269.2 214 63.1
Glyma.11G032400 Glycine max HOM05D005354 ORTHO05D006315 4.5e-70 268.5 213 62.9
Eucgr.E00426 Eucalyptus grandis HOM05D005354 ORTHO05D006315 5.9e-70 268.1 214 62.6
SGA_v2.0_scaffold54G19448 Striga asiatica HOM05D005354 ORTHO05D006315 7.7e-70 267.7 214 61.7
Phvul.002G062800 Phaseolus vulgaris HOM05D005354 ORTHO05D006315 1.0e-69 267.3 213 62.0
MELO3C013942.2 Cucumis melo HOM05D005354 ORTHO05D006315 6.5e-69 264.6 234 57.7
Aa31LG9G12210 Aethionema arabicum HOM05D000808 ORTHO05D006315 1.1e-68 263.8 209 59.8
CSS0039308 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 1.1e-68 263.8 195 67.7
CSS0003507 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 1.5e-68 263.5 195 67.7
Thhalv10016484m.g Eutrema salsugineum HOM05D005354 ORTHO05D006315 3.2e-68 262.3 209 60.8
Ah.02g116720 Amaranthus hybridus HOM05D005354 ORTHO05D006315 4.2e-68 261.9 215 60.0
BcaB06g28865 Brassica carinata HOM05D005354 ORTHO05D006315 9.4e-68 260.8 208 60.6
Lj2g0013106 Lotus japonicus HOM05D005354 ORTHO05D006315 9.4e-68 260.8 213 61.5
Lalb_Chr05g0214491 Lupinus albus HOM05D005354 ORTHO05D006315 1.2e-67 260.4 213 62.0
Potri.003G076600 Populus trichocarpa HOM05D005354 ORTHO05D006315 1.6e-67 260.0 207 62.8
BraA04t18215Z Brassica rapa HOM05D005354 ORTHO05D006315 6.1e-67 258.1 214 57.9
Lalb_Chr09g0324401 Lupinus albus HOM05D005354 ORTHO05D006315 6.1e-67 258.1 210 61.0
A04p27170 Brassica napus HOM05D005354 ORTHO05D006315 8.0e-67 257.7 208 59.1
BcaC02g07676 Brassica carinata HOM05D005354 ORTHO05D006315 3.0e-66 255.8 208 58.7
C04p64680 Brassica napus HOM05D005354 ORTHO05D006315 3.0e-66 255.8 208 58.7
BolC4t27945H Brassica oleracea HOM05D005354 ORTHO05D006315 3.0e-66 255.8 208 58.7
HanXRQChr03g0088591 Helianthus annuus HOM05D005354 ORTHO05D006315 4.0e-66 255.4 216 59.3
Psat2g177520 Pisum sativum HOM05D005354 ORTHO05D006315 6.7e-66 254.6 213 61.5
AT2G35720 Arabidopsis thaliana HOM05D005354 ORTHO05D006315 2.0e-65 253.1 209 60.8
Lsat_1_v5_gn_6_91180 Lactuca sativa HOM05D005354 ORTHO05D006315 3.3e-65 252.3 217 59.4
TPR.G25879 Trifolium pratense HOM05D005354 ORTHO05D006315 4.4e-65 251.9 213 61.5
Medtr5g012530 Medicago truncatula HOM05D005354 ORTHO05D006315 5.7e-65 251.5 213 62.4
AL4G31810 Arabidopsis lyrata HOM05D005354 ORTHO05D006315 7.5e-65 251.1 209 59.8
Sp4g17990 Schrenkiella parvula HOM05D005354 ORTHO05D006315 7.5e-65 251.1 209 58.4
CARHR129960 Cardamine hirsuta HOM05D005354 ORTHO05D006315 1.3e-64 250.4 209 60.8
Ca_24574_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 3.7e-64 248.8 213 60.1
Glyma.01G209800 Glycine max HOM05D005354 ORTHO05D006315 3.7e-64 248.8 206 60.7
Sabra01G0133300 Salix brachista HOM05D005354 ORTHO05D006315 3.7e-64 248.8 260 51.5
HPP92_015035 Vanilla planifolia HOM05D005354 ORTHO05D006315 3.7e-64 248.8 212 69.3
Carub.0004s1745 Capsella rubella HOM05D005354 ORTHO05D006315 1.1e-63 247.3 209 59.8
Peaxi162Scf00174g00027 Petunia axillaris HOM05D005354 ORTHO05D006315 2.4e-63 246.1 214 58.9
VMungo1215G2766 Vigna mungo HOM05D005354 ORTHO05D006315 2.4e-63 246.1 195 63.1
Actinidia05204 Actinidia chinensis HOM05D005354 ORTHO05D006315 1.2e-62 243.8 214 57.5
ECA240G4831 Erigeron canadensis HOM05D005354 ORTHO05D006315 2.2e-61 239.6 214 54.7
Cpa.g.sc29.153 Carica papaya HOM05D005354 ORTHO05D006315 1.4e-58 230.3 188 60.1
DCAR_027776 Daucus carota HOM05D005354 ORTHO05D006315 2.8e-56 222.6 212 55.2
SMO172G0088 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 9.1e-55 217.6 213 51.2
Pp3c26_4130 Physcomitrium patens HOM05D005354 ORTHO05D006315 5.9e-54 214.9 220 50.0
Hund14561 Selenicereus undatus HOM05D005354 ORTHO05D006315 2.5e-52 209.5 214 53.3
Mapoly0099s0041 Marchantia polymorpha HOM05D005354 ORTHO05D006315 3.2e-52 209.1 214 49.5
AUR62007515 Chenopodium quinoa HOM05D005354 ORTHO05D006315 2.1e-51 206.5 162 64.8
SHI35069 Sapria himalayana HOM05D005354 ORTHO05D006315 1.8e-50 203.4 216 50.0
Pp3c3_14420 Physcomitrium patens HOM05D005354 ORTHO05D006315 1.2e-49 200.7 220 46.4
unitig_8.g3913 Utricularia gibba HOM05D005354 ORTHO05D006315 3.5e-46 189.1 214 48.6
AUR62042790 Chenopodium quinoa HOM05D005354 ORTHO05D006315 5.6e-44 181.8 142 64.8
CDE12G0732 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 7.3e-44 181.4 207 48.3
Ca_24575_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 3.7e-40 169.1 213 45.5
Duzib084G0473 Durio zibethinus HOM05D005354 ORTHO05D006315 7.8e-38 161.4 214 42.5
SMO172G0123 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 1.2e-33 147.5 213 39.0
AUR62044248 Chenopodium quinoa HOM05D005354 ORTHO05D006315 1.4e-26 124.0 100 64.0
Zm00001eb442450 Zea mays HOM05D005354 ORTHO05D006315 1.4e-26 124.0 88 63.6
CBR_g27963 Chara braunii HOM05D005354 ORTHO05D006315 1.8e-26 123.6 167 40.1
Zm00001eb442210 Zea mays HOM05D005354 ORTHO05D006315 3.9e-21 105.9 79 64.6
Cc08_g12460 Coffea canephora HOM05D005354 ORTHO05D006315 2.2e-16 90.1 57 66.7
PRCOL_00004836 Prasinoderma coloniale HOM05D005354 ORTHO05D006315 2.4e-15 86.7 247 27.9
MCO16G272 Micromonas commoda HOM05D005354 ORTHO05D006315 7.1e-15 85.1 215 28.4


User provided reference genes

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