Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 2165.6 1082 100.0
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1448.7 1084 68.2
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1447.6 1077 68.0
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1446.0 1082 67.3
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1435.2 1075 67.3
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1427.9 1090 67.2
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1426.8 1071 66.7
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1422.1 1076 66.9
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1419.4 1092 65.4
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1418.3 1088 66.5
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1415.2 1069 66.7
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1410.6 1085 65.4
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1408.7 1084 66.1
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1408.3 1077 64.6
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1407.9 1072 65.5
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1406.3 1075 65.4
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1406.0 1105 64.8
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1404.4 1111 64.6
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1403.7 1087 65.7
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1403.3 1073 65.6
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1399.8 1080 66.2
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1399.8 1067 65.4
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1399.0 1084 64.9
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1398.3 1073 66.4
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1397.5 1082 65.0
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1394.4 1077 65.8
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1393.6 1091 65.5
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1392.9 1087 65.4
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1390.2 1090 64.5
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1390.2 1073 65.0
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1389.8 1085 64.3
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1383.2 1084 64.5
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1382.9 1082 64.5
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1382.1 1089 64.8
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1379.8 1078 64.2
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1379.4 1074 64.5
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1379.0 1080 63.9
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1378.2 1076 64.7
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1376.7 1082 64.5
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1376.7 1082 65.5
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1375.1 1086 65.4
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1374.8 1068 64.0
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1373.2 1079 65.5
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1372.1 1077 65.3
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1371.7 1068 63.9
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1370.9 1077 65.6
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1368.6 1077 65.2
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1368.2 1079 65.3
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1368.2 1080 63.7
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1367.8 1075 65.8
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1367.8 1077 63.2
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1365.9 1113 63.5
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1365.5 1082 63.8
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1365.5 1100 63.5
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1364.0 1079 64.0
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1363.6 1065 64.5
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1362.1 1081 63.5
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1360.5 1089 64.9
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1360.1 1076 64.0
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1359.7 1087 63.8
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1355.5 1082 63.0
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1355.5 1082 63.1
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1351.7 1081 63.0
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1349.3 1073 64.7
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1347.0 1069 64.7
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1343.2 1086 63.5
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1342.8 1070 63.9
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1342.0 1088 63.7
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1341.3 1089 63.3
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1340.1 1068 64.0
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1338.2 1066 62.9
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1337.4 1078 62.9
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1328.5 1082 63.6
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1327.8 1068 63.6
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1317.8 1082 62.7
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1311.2 1088 62.2
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1310.8 1082 61.5
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1308.9 1068 62.9
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1307.0 1074 61.9
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1305.8 1076 61.8
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1298.5 1081 62.4
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1293.1 1082 60.8
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1276.5 1220 57.3
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1267.3 1069 61.7
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1265.4 1086 61.0
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1248.8 1086 61.1
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1239.9 953 65.2
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1213.4 940 64.1
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1209.1 1136 56.6
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1161.7 947 61.1
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1147.5 1190 52.7
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1117.1 1066 54.7
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 3.0e-295 1018.8 758 66.0
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 3.1e-292 1008.8 756 66.4
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 4.5e-291 1005.0 1088 52.8
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 7.6e-291 1004.2 974 56.0
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 5.3e-276 954.9 1073 47.2
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 4.8e-269 931.8 757 61.4
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 2.0e-262 909.8 1076 47.4
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 4.1e-260 902.1 722 61.8
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 1.2e-235 820.8 1018 48.9
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 4.5e-227 792.3 716 57.5
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 1.2e-222 777.7 1018 44.9
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 4.7e-216 755.7 627 62.7
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 1.3e-189 667.9 540 63.3
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 1.9e-185 654.1 510 63.5
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 4.0e-183 646.4 1508 31.7
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 6.0e-171 605.9 661 50.2
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 4.1e-143 513.5 398 65.8
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 2.2e-117 427.9 333 67.0
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 8.4e-72 276.6 195 69.2
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 1.2e-46 193.0 137 64.2
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 2.2e-35 155.6 92 85.9
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.3e-21 109.0 59 81.4
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 1.2e-17 96.7 54 79.6
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 7.5e-12 77.4 65 55.4
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.1e-10 73.6 62 54.8
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.1e-10 73.6 62 54.8
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.0e-08 67.0 90 42.2
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 1.7e-08 66.2 523 20.1
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.9e-08 65.5 105 39.0
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 1.6e-06 59.7 73 43.8
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 1.6e-06 59.7 73 43.8


User provided reference genes

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