Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.3e-266 922.5 492 100.0
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 1.2e-158 563.9 498 59.6
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 1.6e-158 563.5 513 55.9
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 2.7e-158 562.8 497 58.4
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 1.3e-157 560.5 508 57.7
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 8.6e-157 557.8 517 56.9
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 1.9e-156 556.6 517 56.3
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 8.0e-155 551.2 453 61.4
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.8e-154 550.1 515 57.5
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 2.0e-153 546.6 497 56.3
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 3.4e-153 545.8 485 58.4
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 4.4e-153 545.4 510 56.7
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 4.4e-153 545.4 460 61.3
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 2.2e-152 543.1 505 56.8
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 3.7e-152 542.3 496 56.2
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 8.3e-152 541.2 507 57.0
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 1.1e-151 540.8 509 55.8
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.1e-151 540.8 440 63.0
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 3.1e-151 539.3 505 57.0
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 3.1e-151 539.3 483 58.8
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 4.1e-151 538.9 485 56.9
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 5.4e-151 538.5 485 60.8
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 7.0e-151 538.1 496 57.3
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 9.2e-151 537.7 484 55.2
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 9.2e-151 537.7 512 56.8
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 4.5e-150 535.4 506 56.7
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 5.9e-150 535.0 508 57.1
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 7.8e-150 534.6 501 57.7
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 1.0e-149 534.3 493 55.8
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.9e-149 532.3 503 56.5
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 5.0e-149 531.9 506 56.3
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 6.6e-149 531.6 511 54.8
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.5e-148 530.4 488 56.6
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.5e-148 530.4 500 57.0
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 1.9e-148 530.0 496 56.7
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.5e-148 529.6 507 55.4
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.5e-148 529.6 507 55.4
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 2.5e-148 529.6 492 56.5
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 4.3e-148 528.9 507 55.2
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-147 527.3 507 55.6
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.8e-147 526.2 501 56.9
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 2.8e-147 526.2 516 53.7
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 2.8e-147 526.2 507 54.8
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 4.7e-147 525.4 513 54.2
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 6.1e-147 525.0 499 55.1
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 6.1e-147 525.0 485 55.1
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 2.3e-146 523.1 479 58.5
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 3.1e-146 522.7 503 56.7
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 5.2e-146 521.9 495 55.6
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 5.2e-146 521.9 489 55.6
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 6.8e-146 521.5 490 55.7
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 8.9e-146 521.2 495 55.6
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 1.2e-145 520.8 491 56.6
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 1.5e-145 520.4 495 55.4
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 1.5e-145 520.4 476 59.0
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 4.4e-145 518.8 495 55.2
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 4.4e-145 518.8 511 53.8
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 5.8e-145 518.5 488 57.8
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 9.8e-145 517.7 495 54.7
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 1.3e-144 517.3 495 55.2
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 1.7e-144 516.9 492 55.9
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 2.2e-144 516.5 445 60.2
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 2.2e-144 516.5 513 51.9
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 3.7e-144 515.8 446 59.4
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 4.9e-144 515.4 495 54.9
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.9e-143 513.5 507 52.7
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 2.4e-143 513.1 427 62.1
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.4e-143 513.1 506 54.5
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 7.0e-143 511.5 495 55.4
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 9.2e-143 511.1 495 55.2
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 9.2e-143 511.1 496 53.4
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 4.6e-142 508.8 519 51.8
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 1.0e-141 507.7 455 58.5
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 2.3e-141 506.5 489 54.0
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 3.0e-141 506.1 489 54.6
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 5.0e-141 505.4 511 51.9
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 5.6e-140 501.9 503 53.5
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 1.5e-137 493.8 526 51.1
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 4.4e-137 492.3 404 63.4
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 3.7e-136 489.2 493 52.1
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 2.7e-134 483.0 515 49.9
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 7.8e-134 481.5 533 48.0
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 1.0e-133 481.1 419 56.3
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.8e-130 470.3 459 54.9
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 6.8e-130 468.4 460 51.5
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 6.8e-130 468.4 397 62.0
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 1.5e-129 467.2 423 60.8
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.3e-128 464.2 460 54.6
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 6.4e-128 461.8 466 50.9
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 3.5e-126 456.1 428 57.7
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 7.3e-124 448.4 501 49.9
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 6.8e-122 441.8 523 48.9
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-120 436.4 470 52.1
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 6.0e-118 428.7 407 53.1
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 3.0e-117 426.4 428 49.8
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 5.6e-116 422.2 445 51.9
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 7.3e-116 421.8 483 44.5
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 6.9e-114 415.2 378 56.3
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 3.9e-109 399.4 426 46.2
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 1.7e-96 357.5 358 55.0
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.1e-90 338.2 279 60.6
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.7e-88 330.9 387 45.2
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 2.2e-88 330.5 259 64.1
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.1e-84 318.2 167 97.0
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 4.8e-83 312.8 458 38.9
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 6.3e-83 312.4 278 61.5
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 8.2e-83 312.0 516 38.6
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 5.0e-72 276.2 289 53.3
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 7.2e-63 245.7 215 56.3
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 4.8e-59 233.0 230 54.3
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 3.5e-57 226.9 403 33.7
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 1.0e-53 215.3 220 52.7
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 4.4e-52 209.9 332 38.6
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 1.3e-51 208.4 210 55.2
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 4.8e-51 206.5 175 57.1
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 9.4e-47 192.2 240 48.3
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 8.0e-46 189.1 151 58.3
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.5e-44 184.9 161 59.6
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.5e-44 184.9 161 59.6
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.5e-44 184.9 161 59.6
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.5e-44 184.9 161 59.6
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 2.4e-42 177.6 202 49.5
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 2.4e-34 151.0 109 67.0
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 1.3e-27 128.6 435 26.0
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 4.9e-27 126.7 125 44.0
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 6.6e-24 116.3 98 55.1
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 1.2e-22 112.1 216 32.4
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 1.6e-22 111.7 360 24.4
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 4.7e-22 110.2 166 42.2
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 1.1e-21 109.0 112 57.1
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.1e-21 109.0 76 64.5
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.0e-16 90.9 161 39.8
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 8.6e-16 89.4 174 31.0
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.1e-15 89.0 106 41.5
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.9e-15 88.2 45 80.0
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 3.1e-13 80.9 92 57.6
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 8.9e-13 79.3 97 40.2
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-12 79.0 153 31.4
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 8.4e-11 72.8 92 54.3
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 2.7e-09 67.8 87 37.9
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 5.6e-07 60.1 49 59.2


User provided reference genes

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