Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_015035 Vanilla planifolia HOM05D005354 ORTHO05D006315 6.8e-210 733.8 382 100.0
HPP92_015115 Vanilla planifolia HOM05D005354 ORTHO05D006315 8.5e-120 434.5 378 70.9
Os10g0507800 Oryza sativa ssp. japonica HOM05D005354 ORTHO05D006315 6.4e-83 312.0 376 51.6
MBI04_g09494_MAGBIO Magnolia biondii HOM05D005354 ORTHO05D006315 3.2e-82 309.7 366 53.6
Actinidia27464 Actinidia chinensis HOM05D005354 ORTHO05D006315 3.9e-80 302.8 374 50.0
TAR629G2416 Trochodendron aralioides HOM05D005354 ORTHO05D006315 3.9e-80 302.8 374 51.9
Peaxi162Scf00174g00027 Petunia axillaris HOM05D005354 ORTHO05D006315 8.6e-80 301.6 375 48.8
Nn1g01007 Nelumbo nucifera HOM05D005354 ORTHO05D006315 1.5e-79 300.8 374 50.3
ATR0317G109 Amborella trichopoda HOM05D005354 ORTHO05D006315 2.5e-79 300.1 377 50.1
CSS0003507 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 9.5e-79 298.1 375 49.6
CSS0039308 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 9.5e-79 298.1 375 49.6
TWI81G0349 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 1.6e-78 297.4 374 49.2
vmacro14088 Vaccinium macrocarpon HOM05D005354 ORTHO05D006315 2.1e-78 297.0 379 49.3
CSS0011263 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 6.2e-78 295.4 374 49.7
Cc08_g12480 Coffea canephora HOM05D005354 ORTHO05D006315 6.2e-78 295.4 374 48.9
GSVIVG01001321001 Vitis vinifera HOM05D005354 ORTHO05D006315 8.0e-78 295.0 374 48.9
Rhsim07G0108200 Rhododendron simsii HOM05D005354 ORTHO05D006315 1.4e-77 294.3 374 48.9
Gohir.D03G162600 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.8e-77 293.9 374 48.4
Gorai.003G171200 Gossypium raimondii HOM05D005354 ORTHO05D006315 1.8e-77 293.9 374 48.4
TWI60G0726 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 4.0e-77 292.7 374 49.7
Aqoxy7G00759 Aquilegia oxysepala HOM05D005354 ORTHO05D006315 8.9e-77 291.6 374 48.9
Ciclev10019626m.g Citrus clementina HOM05D005354 ORTHO05D006315 8.9e-77 291.6 366 49.2
Zm00001eb043970 Zea mays HOM05D005354 ORTHO05D006315 8.9e-77 291.6 376 48.7
QL12p012213 Quercus lobata HOM05D005354 ORTHO05D006315 1.2e-76 291.2 374 48.1
CDE04G0953 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 1.5e-76 290.8 374 48.1
Gohir.A03G008300 Gossypium hirsutum HOM05D005354 ORTHO05D006315 2.0e-76 290.4 374 48.1
Manes.01G080300 Manihot esculenta HOM05D005354 ORTHO05D006315 2.0e-76 290.4 374 50.3
Atru.chr9.1319 Acer truncatum HOM05D005354 ORTHO05D006315 4.4e-76 289.3 374 47.9
Eucgr.E00426 Eucalyptus grandis HOM05D005354 ORTHO05D006315 4.4e-76 289.3 374 49.2
PSO170G3683 Papaver somniferum HOM05D005354 ORTHO05D006315 1.3e-75 287.7 372 49.7
Nitab4.5_0000312g0100 Nicotiana tabacum HOM05D005354 ORTHO05D006315 1.7e-75 287.3 374 47.9
CiPaw.11G153900 Carya illinoinensis HOM05D005354 ORTHO05D006315 2.2e-75 287.0 374 47.6
Lj2A217G28 Lonicera japonica HOM05D005354 ORTHO05D006315 2.2e-75 287.0 374 48.7
ClCG10G002710 Citrullus lanatus HOM05D005354 ORTHO05D006315 2.9e-75 286.6 386 45.1
Potri.003G076600 Populus trichocarpa HOM05D005354 ORTHO05D006315 3.7e-75 286.2 374 47.9
PSO017G6196 Papaver somniferum HOM05D005354 ORTHO05D006315 4.9e-75 285.8 374 49.5
Nitab4.5_0007598g0020 Nicotiana tabacum HOM05D005354 ORTHO05D006315 1.1e-74 284.6 374 47.9
Oeu040216.1 Olea europaea HOM05D005354 ORTHO05D006315 1.9e-74 283.9 374 47.3
Potri.001G158200 Populus trichocarpa HOM05D005354 ORTHO05D006315 3.2e-74 283.1 374 47.9
EL10Ac5g13072 Beta vulgaris HOM05D005354 ORTHO05D006315 5.4e-74 282.3 378 46.3
Manes.02G039200 Manihot esculenta HOM05D005354 ORTHO05D006315 5.4e-74 282.3 374 48.4
Solyc08g078660.3 Solanum lycopersicum HOM05D005354 ORTHO05D006315 5.4e-74 282.3 374 46.8
Sopen08g027140 Solanum pennellii HOM05D005354 ORTHO05D006315 2.0e-73 280.4 374 46.5
Thecc.03G252000 Theobroma cacao HOM05D005354 ORTHO05D006315 6.0e-73 278.9 374 47.6
CsaV3_3G002740 Cucumis sativus L. HOM05D005354 ORTHO05D006315 1.3e-72 277.7 374 45.2
Sed0003796 Sechium edule HOM05D005354 ORTHO05D006315 1.7e-72 277.3 374 45.2
Actinidia05204 Actinidia chinensis HOM05D005354 ORTHO05D006315 3.0e-72 276.6 357 47.6
arahy.Tifrunner.gnm1.ann1.BT71C1 Arachis hypogaea HOM05D005354 ORTHO05D006315 3.9e-72 276.2 374 47.9
arahy.Tifrunner.gnm1.ann1.LCH2QT Arachis hypogaea HOM05D005354 ORTHO05D006315 3.9e-72 276.2 374 47.9
RcHm_v2.0_Chr7g0203181 Rosa chinensis HOM05D005354 ORTHO05D006315 3.9e-72 276.2 374 46.0
MD06G1057900 Malus domestica HOM05D005354 ORTHO05D006315 8.6e-72 275.0 374 46.0
CAN.G1367.6 Capsicum annuum HOM05D005354 ORTHO05D006315 1.1e-71 274.6 374 46.0
PGR042G1820 Punica granatum HOM05D005354 ORTHO05D006315 1.5e-71 274.2 374 45.7
COL.COLO4_37182 Corchorus olitorius HOM05D005354 ORTHO05D006315 1.9e-71 273.9 374 47.1
Haze_07917 Corylus avellana HOM05D005354 ORTHO05D006315 5.6e-71 272.3 385 46.0
Migut.E00837 Erythranthe guttata HOM05D005354 ORTHO05D006315 9.5e-71 271.6 377 46.7
Lalb_Chr05g0214491 Lupinus albus HOM05D005354 ORTHO05D006315 9.5e-71 271.6 374 46.8
Prupe.5G069200 Prunus persica HOM05D005354 ORTHO05D006315 1.6e-70 270.8 374 45.2
Lalb_Chr09g0324401 Lupinus albus HOM05D005354 ORTHO05D006315 2.1e-70 270.4 374 45.7
MELO3C013942.2 Cucumis melo HOM05D005354 ORTHO05D006315 2.8e-70 270.0 375 45.1
Glyma.01G209800 Glycine max HOM05D005354 ORTHO05D006315 2.8e-70 270.0 376 44.4
HanXRQChr03g0088591 Helianthus annuus HOM05D005354 ORTHO05D006315 3.6e-70 269.6 376 45.2
ECA240G4831 Erigeron canadensis HOM05D005354 ORTHO05D006315 4.7e-70 269.2 374 45.7
SGA_v2.0_scaffold54G19448 Striga asiatica HOM05D005354 ORTHO05D006315 4.7e-70 269.2 374 46.0
Phvul.002G062800 Phaseolus vulgaris HOM05D005354 ORTHO05D006315 8.1e-70 268.5 374 46.5
VMungo1215G2766 Vigna mungo HOM05D005354 ORTHO05D006315 8.1e-70 268.5 374 47.1
Glyma.11G032400 Glycine max HOM05D005354 ORTHO05D006315 1.8e-69 267.3 374 44.9
Ah.02g116720 Amaranthus hybridus HOM05D005354 ORTHO05D006315 3.1e-69 266.5 379 45.1
BcaB06g28865 Brassica carinata HOM05D005354 ORTHO05D006315 4.0e-69 266.2 375 45.3
CANSAT21G0216 Cannabis sativa HOM05D005354 ORTHO05D006315 5.2e-69 265.8 375 45.3
Thhalv10016484m.g Eutrema salsugineum HOM05D005354 ORTHO05D006315 5.2e-69 265.8 374 44.9
Lsat_1_v5_gn_6_91180 Lactuca sativa HOM05D005354 ORTHO05D006315 1.2e-68 264.6 377 45.4
Dinv21636 Davidia involucrata HOM05D005354 ORTHO05D006315 3.4e-68 263.1 374 46.3
THA.LOC104815494 Tarenaya hassleriana HOM05D005354 ORTHO05D006315 3.4e-68 263.1 374 45.7
MSTRG.25527 Avicennia marina HOM05D005354 ORTHO05D006315 4.4e-68 262.7 374 45.2
FvH4_5g18830 Fragaria vesca HOM05D005354 ORTHO05D006315 4.4e-68 262.7 374 44.9
Psat2g177520 Pisum sativum HOM05D005354 ORTHO05D006315 7.5e-68 261.9 374 45.5
Sc01g0008460 Simmondsia chinensis HOM05D005354 ORTHO05D006315 1.3e-67 261.2 401 42.1
A04p27170 Brassica napus HOM05D005354 ORTHO05D006315 1.7e-67 260.8 375 44.3
Hund14561 Selenicereus undatus HOM05D005354 ORTHO05D006315 1.7e-67 260.8 354 46.3
BraA04t18215Z Brassica rapa HOM05D005354 ORTHO05D006315 2.9e-67 260.0 375 44.3
Ca_24574_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 2.9e-67 260.0 376 44.9
Sabra01G0133300 Salix brachista HOM05D005354 ORTHO05D006315 2.9e-67 260.0 420 42.1
FAN08G0881 Fragaria x ananassa HOM05D005354 ORTHO05D006315 4.9e-67 259.2 374 45.5
FAN13G0823 Fragaria x ananassa HOM05D005354 ORTHO05D006315 4.9e-67 259.2 374 44.7
FAN04G2371 Fragaria x ananassa HOM05D005354 ORTHO05D006315 8.3e-67 258.5 374 44.4
FAN18G0938 Fragaria x ananassa HOM05D005354 ORTHO05D006315 1.1e-66 258.1 375 44.8
FAN18G2353 Fragaria x ananassa HOM05D005354 ORTHO05D006315 1.1e-66 258.1 375 44.8
TPR.G25879 Trifolium pratense HOM05D005354 ORTHO05D006315 1.1e-66 258.1 376 44.7
Lj2g0013106 Lotus japonicus HOM05D005354 ORTHO05D006315 1.4e-66 257.7 374 44.4
Medtr5g012530 Medicago truncatula HOM05D005354 ORTHO05D006315 1.4e-66 257.7 374 44.7
BcaC02g07676 Brassica carinata HOM05D005354 ORTHO05D006315 3.2e-66 256.5 375 43.7
C04p64680 Brassica napus HOM05D005354 ORTHO05D006315 3.2e-66 256.5 375 43.7
BolC4t27945H Brassica oleracea HOM05D005354 ORTHO05D006315 3.2e-66 256.5 375 43.7
Sp4g17990 Schrenkiella parvula HOM05D005354 ORTHO05D006315 4.1e-66 256.1 374 44.4
CARHR129960 Cardamine hirsuta HOM05D005354 ORTHO05D006315 9.2e-66 255.0 374 44.7
Carub.0004s1745 Capsella rubella HOM05D005354 ORTHO05D006315 1.6e-65 254.2 383 43.1
Dinv39144 Davidia involucrata HOM05D005354 ORTHO05D006315 2.1e-65 253.8 374 45.7
Aa31LG9G12210 Aethionema arabicum HOM05D000808 ORTHO05D006315 2.7e-65 253.4 374 43.0
AT2G35720 Arabidopsis thaliana HOM05D005354 ORTHO05D006315 6.0e-65 252.3 374 44.1
Prupe.5G069100 Prunus persica HOM05D005354 ORTHO05D006315 7.8e-65 251.9 374 44.1
AL4G31810 Arabidopsis lyrata HOM05D005354 ORTHO05D006315 1.0e-64 251.5 374 44.1
DCAR_027776 Daucus carota HOM05D005354 ORTHO05D006315 3.0e-64 250.0 357 45.7
HPP92_015106 Vanilla planifolia HOM05D005354 ORTHO05D006315 2.5e-63 246.9 212 69.3
SHI35069 Sapria himalayana HOM05D005354 ORTHO05D006315 7.6e-60 235.3 359 44.0
PGSC0003DMG400004811 Solanum tuberosum HOM05D005354 ORTHO05D006315 3.1e-53 213.4 252 51.2
Pp3c26_4130 Physcomitrium patens HOM05D005354 ORTHO05D006315 3.9e-48 196.4 381 36.0
Mapoly0099s0041 Marchantia polymorpha HOM05D005354 ORTHO05D006315 2.8e-46 190.3 378 35.2
Zm00001eb442210 Zea mays HOM05D005354 ORTHO05D006315 2.3e-40 170.6 273 44.0
Duzib084G0473 Durio zibethinus HOM05D005354 ORTHO05D006315 1.8e-37 161.0 279 39.1
SMO172G0088 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 1.8e-37 161.0 377 32.4
Pp3c3_14420 Physcomitrium patens HOM05D005354 ORTHO05D006315 6.9e-37 159.1 381 31.5
Cpa.g.sc29.153 Carica papaya HOM05D005354 ORTHO05D006315 9.0e-37 158.7 183 48.1
Ca_24575_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 2.0e-36 157.5 376 34.0
AUR62007515 Chenopodium quinoa HOM05D005354 ORTHO05D006315 1.1e-31 141.7 125 60.0
AUR62042791 Chenopodium quinoa HOM05D005354 ORTHO05D006315 3.3e-31 140.2 174 46.0
AUR62044247 Chenopodium quinoa HOM05D005354 ORTHO05D006315 7.4e-31 139.0 174 46.0
Migut.E01656 Erythranthe guttata HOM05D005354 ORTHO05D006315 4.0e-29 133.3 177 47.5
HPP92_015107 Vanilla planifolia HOM05D005354 ORTHO05D006315 9.0e-29 132.1 76 94.7
AUR62042790 Chenopodium quinoa HOM05D005354 ORTHO05D006315 3.8e-27 126.7 111 60.4
AUR62044248 Chenopodium quinoa HOM05D005354 ORTHO05D006315 1.4e-26 124.8 132 53.8
CBR_g27963 Chara braunii HOM05D005354 ORTHO05D006315 5.0e-19 99.8 239 31.4
SMO172G0123 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 6.5e-19 99.4 377 26.0
Pp3c26_4030 Physcomitrium patens HOM05D005354 ORTHO05D006315 2.8e-14 84.0 175 34.9
unitig_8.g3913 Utricularia gibba HOM05D005354 ORTHO05D006315 5.9e-12 76.3 208 31.7
CDE12G0732 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 7.7e-12 75.9 114 42.1
Lsat_1_v5_gn_5_20860 Lactuca sativa HOM05D005354 ORTHO05D006315 4.2e-10 70.1 60 58.3
Zm00001eb442450 Zea mays HOM05D005354 ORTHO05D006315 5.5e-10 69.7 56 57.1
Zm00001eb442460 Zea mays HOM05D005354 ORTHO05D006315 7.2e-10 69.3 56 66.1
CDE12G0753 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 8.8e-08 62.4 55 58.2


User provided reference genes

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