Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 9.3e-245 849.7 418 100.0
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.2e-244 849.4 418 99.8
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 2.9e-137 492.7 377 62.9
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 3.8e-137 492.3 388 60.8
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 3.8e-137 492.3 382 60.5
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 8.4e-137 491.1 387 61.0
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.4e-136 490.3 391 60.6
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.4e-136 490.3 390 60.0
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.4e-136 490.3 382 62.8
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 1.4e-136 490.3 387 60.2
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 1.9e-136 490.0 387 60.5
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 4.1e-136 488.8 398 60.1
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 4.1e-136 488.8 395 59.7
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 4.1e-136 488.8 382 60.7
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.4e-136 488.4 389 59.9
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 1.2e-135 487.3 397 58.2
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 1.6e-135 486.9 389 59.9
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 6.0e-135 485.0 397 59.7
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.3e-134 483.8 389 59.6
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.7e-134 483.4 377 61.5
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.3e-134 483.0 384 59.9
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.3e-134 483.0 387 59.7
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 2.3e-134 483.0 387 59.2
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 3.9e-134 482.3 396 60.1
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.1e-133 480.7 376 62.0
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 3.3e-133 479.2 388 59.3
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.6e-133 478.4 380 60.0
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 5.6e-133 478.4 393 60.6
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 7.3e-133 478.0 393 60.1
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 9.6e-133 477.6 385 60.8
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.1e-132 476.5 404 59.4
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 2.1e-132 476.5 399 58.6
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 6.2e-132 474.9 391 58.6
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 6.2e-132 474.9 380 59.2
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 1.8e-131 473.4 388 59.3
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 2.4e-131 473.0 394 57.6
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 3.1e-131 472.6 413 56.4
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 4.0e-131 472.2 383 59.5
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 4.0e-131 472.2 383 59.5
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 5.2e-131 471.9 400 58.8
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 8.9e-131 471.1 403 57.1
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.5e-130 470.3 385 59.5
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 2.0e-130 469.9 395 57.5
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 2.0e-130 469.9 416 56.7
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 4.4e-130 468.8 411 56.0
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 4.4e-130 468.8 374 60.7
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 9.9e-130 467.6 373 60.1
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 2.2e-129 466.5 380 58.7
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 2.9e-129 466.1 387 57.9
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 2.9e-129 466.1 372 61.8
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 3.8e-129 465.7 386 58.3
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 4.9e-129 465.3 375 59.7
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 1.1e-128 464.2 389 59.1
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.2e-128 462.6 389 58.4
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 3.2e-128 462.6 386 58.5
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 5.4e-128 461.8 387 58.9
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 7.1e-128 461.5 386 58.3
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 7.1e-128 461.5 386 58.3
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 7.1e-128 461.5 383 59.8
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 9.3e-128 461.1 389 57.3
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 9.3e-128 461.1 385 58.4
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 9.3e-128 461.1 389 57.8
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 9.3e-128 461.1 378 59.5
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 1.2e-127 460.7 382 58.1
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.2e-127 460.7 389 58.1
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 1.6e-127 460.3 391 57.3
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 1.6e-127 460.3 377 59.2
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.1e-127 459.9 380 58.9
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.7e-127 459.5 386 58.0
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 2.7e-127 459.5 379 59.6
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.7e-127 459.5 378 58.2
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 7.8e-127 458.0 399 56.6
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 7.8e-127 458.0 385 58.4
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.0e-126 457.6 375 60.8
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 1.0e-126 457.6 414 55.6
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 1.3e-126 457.2 386 57.8
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.3e-126 457.2 397 56.7
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.7e-126 456.8 383 58.5
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.3e-126 456.4 397 56.7
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 2.3e-126 456.4 377 58.9
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 3.9e-126 455.7 401 55.6
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-125 454.1 387 57.9
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.9e-125 453.4 398 56.8
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 4.3e-125 452.2 391 55.2
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 5.6e-125 451.8 382 58.4
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 7.3e-125 451.4 385 58.2
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.6e-124 450.3 388 57.7
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.6e-124 450.3 388 57.7
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 1.6e-124 450.3 388 57.7
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 4.8e-124 448.7 387 58.1
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 4.8e-124 448.7 387 58.1
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.8e-123 446.8 385 56.6
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 2.4e-123 446.4 386 56.7
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 6.9e-123 444.9 385 56.9
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 1.7e-121 440.3 388 57.0
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.1e-120 437.6 387 56.3
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.9e-120 436.8 398 55.5
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.7e-119 433.0 385 55.1
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 6.0e-119 431.8 402 53.2
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 2.3e-118 429.9 464 49.6
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.1e-116 423.3 374 55.9
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.2e-114 417.5 379 53.6
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 7.6e-114 414.8 381 53.8
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.1e-112 411.0 369 55.3
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.9e-112 410.2 347 58.8
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 9.3e-112 407.9 384 52.6
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 2.7e-111 406.4 399 50.9
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 2.7e-111 406.4 391 54.2
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 9.6e-109 397.9 379 53.0
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 9.0e-107 391.3 308 62.3
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 5.8e-106 388.7 296 63.9
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 9.3e-104 381.3 390 48.7
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 3.5e-103 379.4 298 62.4
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 5.1e-102 375.6 390 48.2
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 8.7e-102 374.8 390 48.7
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 4.3e-101 372.5 371 48.8
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 3.4e-98 362.8 640 35.3
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.8e-97 359.4 379 48.5
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 4.6e-95 352.4 262 61.5
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 3.9e-94 349.4 255 62.0
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 9.7e-93 344.7 402 46.8
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 3.7e-92 342.8 263 59.3
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.8e-91 340.5 379 48.8
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.7e-89 334.0 400 45.0
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 6.1e-87 325.5 263 58.2
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 6.7e-86 322.0 245 59.2
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-85 321.2 246 58.9
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 3.3e-85 319.7 227 64.3
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 4.4e-85 319.3 361 47.9
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.4e-83 314.3 247 60.3
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 7.4e-77 292.0 255 56.5
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 1.7e-76 290.8 272 54.4
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.7e-73 280.8 268 54.1
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.2e-72 276.6 193 64.8
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 7.2e-64 248.8 368 39.4
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 4.1e-59 233.0 157 68.2
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.0e-50 204.1 223 48.0
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.0e-49 199.5 298 41.6
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 7.3e-40 169.1 410 34.4
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 9.5e-40 168.7 223 43.0
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 8.0e-39 165.6 122 62.3
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 6.8e-38 162.5 112 65.2
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.2e-31 141.7 172 45.9
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.8e-30 137.9 378 29.4
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 3.1e-30 137.1 263 31.2
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 2.6e-29 134.0 156 49.4
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.9e-29 132.1 96 59.4
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 7.8e-26 122.5 176 42.6
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 2.4e-22 110.9 323 28.5
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 1.9e-19 101.3 70 61.4
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 3.2e-19 100.5 98 49.0
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.3e-17 95.1 93 51.6
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 2.5e-16 90.9 93 49.5
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 2.8e-15 87.4 93 48.4
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 8.1e-15 85.9 77 53.2
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.6e-07 61.6 52 51.9
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.8e-06 58.2 53 52.8
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 2.4e-06 57.8 55 47.3


User provided reference genes

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