Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 5.6e-152 540.8 254 100.0
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.5e-112 409.1 224 80.4
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 1.3e-111 406.8 241 75.1
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 4.8e-111 404.8 241 75.5
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.6e-109 399.1 231 76.6
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 4.5e-109 398.3 228 77.6
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.0e-108 397.1 238 73.9
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 8.4e-108 394.0 235 75.3
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.4e-107 393.3 237 75.9
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.4e-107 393.3 233 75.1
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.2e-107 392.1 232 75.9
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 3.2e-107 392.1 246 72.4
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.2e-107 391.7 230 77.0
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 5.5e-107 391.3 241 72.2
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 5.5e-107 391.3 232 75.9
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 9.3e-107 390.6 239 74.9
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.2e-106 390.2 233 74.7
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.2e-106 390.2 230 75.7
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.6e-106 389.8 253 70.0
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.6e-106 389.8 236 74.6
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.1e-106 389.4 233 76.0
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 2.7e-106 389.0 234 74.8
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 2.7e-106 389.0 241 71.8
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 2.7e-106 389.0 235 75.7
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 2.7e-106 389.0 237 73.8
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 3.5e-106 388.7 240 72.9
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 4.6e-106 388.3 232 73.7
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 4.6e-106 388.3 230 76.5
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 4.6e-106 388.3 230 74.8
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 6.1e-106 387.9 226 73.9
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 6.1e-106 387.9 235 71.9
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 6.1e-106 387.9 235 75.3
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 7.9e-106 387.5 230 73.9
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 7.9e-106 387.5 230 75.7
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 7.9e-106 387.5 243 72.8
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 7.9e-106 387.5 239 72.4
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 1.0e-105 387.1 229 76.4
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.0e-105 387.1 229 75.1
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.0e-105 387.1 232 75.0
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.0e-105 387.1 239 74.1
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.0e-105 387.1 243 72.8
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.3e-105 386.7 230 74.3
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.3e-105 386.7 233 75.5
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.8e-105 386.3 248 71.4
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 1.8e-105 386.3 241 73.9
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.8e-105 386.3 228 75.0
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.8e-105 386.3 230 75.2
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 1.8e-105 386.3 233 74.7
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 2.3e-105 386.0 243 71.2
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 2.3e-105 386.0 228 75.0
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 2.3e-105 386.0 237 72.6
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 2.3e-105 386.0 227 75.8
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 3.0e-105 385.6 239 73.6
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.0e-105 385.6 228 75.0
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 3.0e-105 385.6 234 73.5
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 3.0e-105 385.6 233 74.2
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 3.0e-105 385.6 235 74.0
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 3.0e-105 385.6 230 74.8
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 3.9e-105 385.2 229 75.1
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 3.9e-105 385.2 233 73.4
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.9e-105 385.2 230 75.2
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 5.1e-105 384.8 231 74.5
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 5.1e-105 384.8 241 71.4
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 5.1e-105 384.8 232 72.4
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 6.7e-105 384.4 230 74.3
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 6.7e-105 384.4 230 73.9
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 6.7e-105 384.4 228 75.0
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 6.7e-105 384.4 248 69.8
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 6.7e-105 384.4 230 74.3
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.7e-105 384.4 230 74.8
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 6.7e-105 384.4 241 73.0
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 8.7e-105 384.0 229 75.1
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 8.7e-105 384.0 230 73.9
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.1e-104 383.6 230 73.9
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.1e-104 383.6 232 75.0
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.1e-104 383.6 235 74.0
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.1e-104 383.6 230 75.2
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.5e-104 383.3 230 75.7
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.5e-104 383.3 231 73.2
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 1.5e-104 383.3 228 75.0
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.9e-104 382.9 234 72.2
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.9e-104 382.9 228 74.6
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.9e-104 382.9 245 68.6
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 2.5e-104 382.5 229 74.2
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 2.5e-104 382.5 230 73.9
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.5e-104 382.5 232 74.6
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.5e-104 382.5 231 73.2
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.5e-104 382.5 231 73.2
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.5e-104 382.5 239 72.4
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 2.5e-104 382.5 236 71.2
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 3.3e-104 382.1 229 74.2
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.3e-104 382.1 230 73.5
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 4.3e-104 381.7 233 73.4
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 4.3e-104 381.7 230 73.9
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.3e-104 381.7 228 73.7
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 4.3e-104 381.7 230 74.8
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 4.3e-104 381.7 227 74.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 5.7e-104 381.3 240 71.2
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 5.7e-104 381.3 232 74.6
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 5.7e-104 381.3 237 72.2
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 5.7e-104 381.3 235 73.6
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 7.4e-104 380.9 242 70.7
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 7.4e-104 380.9 228 74.6
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 7.4e-104 380.9 238 71.0
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 9.7e-104 380.6 239 71.1
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 9.7e-104 380.6 230 73.9
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 9.7e-104 380.6 238 72.3
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 2.2e-103 379.4 238 73.1
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.8e-103 379.0 227 73.1
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 2.8e-103 379.0 236 72.0
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 3.7e-103 378.6 230 73.5
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.7e-103 378.6 235 71.9
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 4.8e-103 378.3 229 73.8
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 4.8e-103 378.3 229 73.8
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 4.8e-103 378.3 230 73.5
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 6.3e-103 377.9 239 71.1
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.3e-103 377.9 238 70.2
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 6.3e-103 377.9 233 72.5
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-102 377.1 239 71.1
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.1e-102 377.1 239 71.1
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.1e-102 377.1 235 71.9
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.4e-102 376.7 230 72.6
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 2.4e-102 375.9 230 73.9
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.4e-102 375.9 237 71.3
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.4e-102 375.9 236 72.9
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.1e-102 375.6 242 70.2
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 5.3e-102 374.8 232 71.6
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 5.3e-102 374.8 230 72.2
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 5.3e-102 374.8 235 71.9
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 5.3e-102 374.8 235 71.5
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 6.9e-102 374.4 233 71.2
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 6.9e-102 374.4 239 69.9
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 9.0e-102 374.0 233 70.8
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.5e-101 373.2 230 71.3
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.6e-101 372.5 232 71.1
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 5.9e-101 371.3 231 72.3
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 7.7e-101 370.9 230 72.6
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.3e-100 370.2 249 68.7
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 1.7e-100 369.8 230 72.2
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 2.5e-99 365.9 223 72.2
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 6.1e-98 361.3 232 68.5
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.8e-97 359.8 236 67.4
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 3.3e-96 355.5 211 74.4
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 9.7e-96 354.0 230 67.8
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 1.3e-95 353.6 232 69.0
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 1.3e-95 353.6 233 69.1
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.2e-95 352.8 239 66.9
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 8.2e-95 350.9 229 65.9
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 8.8e-89 330.9 195 75.9
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.1e-88 330.5 230 64.8
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 2.0e-77 293.1 228 60.5
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.2e-72 277.3 161 78.3
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 2.0e-72 276.6 155 78.7
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 4.8e-71 271.9 157 77.1
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.0e-69 266.5 228 56.1
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 3.8e-60 235.7 159 65.4
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 3.4e-56 222.6 223 48.9
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.9e-46 190.3 232 44.0
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 5.6e-43 178.7 207 48.3
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.2e-37 161.0 96 77.1
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 3.3e-27 126.3 92 64.1
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 3.1e-25 119.8 116 51.7
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.3e-20 104.4 63 74.6
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 3.9e-12 76.3 66 60.6
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 2.5e-11 73.6 51 60.8


User provided reference genes

Program Settings