Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 0.0e+00 3696.4 1900 100.0
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 0.0e+00 2810.8 1909 76.5
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 0.0e+00 2805.4 1910 76.2
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 0.0e+00 2775.3 1915 75.6
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 0.0e+00 2771.5 1920 75.1
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 0.0e+00 2762.3 1907 75.3
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 0.0e+00 2760.7 1915 75.2
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 0.0e+00 2758.8 1902 75.5
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 0.0e+00 2753.4 1915 74.7
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 0.0e+00 2750.7 1934 74.6
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 0.0e+00 2749.5 1936 74.2
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 0.0e+00 2745.3 1912 74.6
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 0.0e+00 2743.8 1919 74.5
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 0.0e+00 2743.0 1895 75.0
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 0.0e+00 2743.0 1920 74.2
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 0.0e+00 2739.9 1917 74.2
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 2735.7 1920 74.0
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 2734.9 1912 74.5
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 0.0e+00 2733.4 1921 74.4
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 0.0e+00 2732.6 1918 74.6
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 2731.8 1920 74.0
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 2731.4 1912 74.6
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 2729.9 1918 74.2
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 0.0e+00 2726.8 1916 74.0
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 0.0e+00 2726.4 1916 74.0
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 0.0e+00 2721.8 1912 74.3
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 0.0e+00 2720.3 1911 74.5
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 0.0e+00 2712.6 1924 73.6
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 0.0e+00 2707.6 1915 74.2
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 0.0e+00 2703.7 1892 74.3
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 0.0e+00 2702.5 1915 74.0
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 0.0e+00 2699.1 1942 72.7
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 2697.5 1911 73.7
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 0.0e+00 2689.4 1915 73.1
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 0.0e+00 2686.4 1920 72.9
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 0.0e+00 2686.4 1930 73.1
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 0.0e+00 2682.1 1932 72.8
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 0.0e+00 2680.2 1899 73.8
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 0.0e+00 2679.8 1914 72.5
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 0.0e+00 2678.7 1894 73.9
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 0.0e+00 2677.9 1953 72.0
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 0.0e+00 2677.9 1890 73.1
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 0.0e+00 2677.1 1905 73.7
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 0.0e+00 2677.1 1921 73.4
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 0.0e+00 2674.8 1937 72.1
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 0.0e+00 2672.1 1919 73.4
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 0.0e+00 2670.2 1937 72.1
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 0.0e+00 2667.5 1905 73.1
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 0.0e+00 2663.3 1918 72.3
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 0.0e+00 2662.9 1881 73.4
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 0.0e+00 2660.6 1939 71.4
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 2658.6 1907 72.4
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 0.0e+00 2656.3 1917 72.4
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 0.0e+00 2652.5 1929 72.4
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 0.0e+00 2652.5 1890 73.1
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 0.0e+00 2651.7 1916 73.0
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 0.0e+00 2650.2 1934 71.6
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 0.0e+00 2649.0 1687 80.4
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 0.0e+00 2649.0 1896 73.5
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 0.0e+00 2647.5 1910 72.9
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 0.0e+00 2646.7 1879 73.8
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 0.0e+00 2640.9 1917 72.2
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 0.0e+00 2640.9 1899 72.1
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 0.0e+00 2637.1 1893 73.0
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 0.0e+00 2636.7 1921 71.7
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 0.0e+00 2630.1 1955 70.4
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 0.0e+00 2624.7 1898 72.3
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 0.0e+00 2616.6 1936 71.0
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 0.0e+00 2613.2 1887 72.3
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 0.0e+00 2605.1 1907 70.9
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 0.0e+00 2602.0 1712 77.9
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 0.0e+00 2601.6 1880 72.1
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 2599.3 1882 72.7
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 0.0e+00 2596.6 1923 70.6
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 0.0e+00 2589.7 1879 72.8
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 0.0e+00 2577.0 1884 71.5
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 2576.6 1879 72.3
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 0.0e+00 2568.5 1871 71.7
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 0.0e+00 2565.0 1824 72.6
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 0.0e+00 2561.2 1892 71.0
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 0.0e+00 2560.4 1896 70.8
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 0.0e+00 2559.3 1897 71.0
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 0.0e+00 2558.9 1938 70.3
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 0.0e+00 2544.2 1887 70.8
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 0.0e+00 2540.8 1885 71.1
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 0.0e+00 2540.4 1913 70.3
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 0.0e+00 2537.7 1887 70.9
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 0.0e+00 2536.9 1889 71.0
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 0.0e+00 2530.0 1935 69.2
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 0.0e+00 2522.3 1895 69.8
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 0.0e+00 2521.5 1895 70.0
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 0.0e+00 2511.1 1890 69.8
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 0.0e+00 2505.7 1903 69.4
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 0.0e+00 2486.4 1910 69.7
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 0.0e+00 2434.8 1775 71.3
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 0.0e+00 2374.4 1909 66.7
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 0.0e+00 2365.5 1866 67.7
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 0.0e+00 2356.3 1880 66.0
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 0.0e+00 2340.1 1915 66.0
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 0.0e+00 2294.6 1511 78.2
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 0.0e+00 2280.4 1930 63.8
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 0.0e+00 2260.3 1777 68.1
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 0.0e+00 2256.1 1930 62.7
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 0.0e+00 2249.2 1532 76.1
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 0.0e+00 2166.0 1518 73.6
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 2164.8 1462 76.7
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 0.0e+00 1915.2 1810 59.1
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 0.0e+00 1761.9 2006 51.2
CDE06G2493 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 0.0e+00 1564.7 1322 64.4
COL.COLO4_34941 Corchorus olitorius HOM05D003720 ORTHO05D005312 0.0e+00 1370.1 1089 68.9
Nitab4.5_0000237g0010 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 1337.4 996 71.5
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 0.0e+00 1312.4 911 74.2
Nitab4.5_0002116g0030 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 1217.2 904 71.3
CDE07G0361 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 0.0e+00 1179.5 923 67.5
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 1170.2 900 68.8
Nitab4.5_0000100g0300 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 1164.1 900 68.3
Cpa.g.sc23.157 Carica papaya HOM05D003720 ORTHO05D005312 1.6e-310 1070.5 808 71.7
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 4.9e-301 1038.9 746 73.5
CDE07G1594 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 7.8e-291 1005.0 591 83.4
Hund12706 Selenicereus undatus HOM05D003720 ORTHO05D005312 6.2e-272 942.2 714 70.7
SHI03184 Sapria himalayana HOM05D003720 ORTHO05D005312 1.3e-229 801.6 585 70.4
Cpa.g.sc23.154 Carica papaya HOM05D003720 ORTHO05D005312 5.3e-223 779.6 574 71.4
FAN23G2146 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.3e-213 748.4 571 68.5
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 2.5e-212 744.2 2059 30.7
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 1.1e-194 685.6 2392 27.4
SHI03186 Sapria himalayana HOM05D003720 ORTHO05D005312 1.8e-194 684.9 564 63.7
CDE06G1063 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 1.9e-151 542.0 417 67.1
Atru.chr7.1285 Acer truncatum HOM05D003720 ORTHO05D005312 1.1e-146 526.2 378 75.1
Cpa.g.sc23.156 Carica papaya HOM05D003720 ORTHO05D005312 9.3e-143 513.1 296 86.1
arahy.Tifrunner.gnm1.ann1.NRTP45 Arachis hypogaea HOM05D003720 ORTHO05D005312 3.2e-135 488.0 391 66.8
arahy.Tifrunner.gnm1.ann1.GFGC5E Arachis hypogaea HOM05D003720 ORTHO05D005312 2.1e-134 485.3 391 67.0
arahy.Tifrunner.gnm1.ann1.HL09EZ Arachis hypogaea HOM05D003720 ORTHO05D005312 4.1e-130 471.1 343 72.9
arahy.Tifrunner.gnm1.ann1.CMVH84 Arachis hypogaea HOM05D003720 ORTHO05D005312 5.9e-97 360.9 260 70.8
MBI09_g30143_MAGBIO Magnolia biondii HOM05D003720 ORTHO05D005312 1.7e-91 342.8 215 80.0
arahy.Tifrunner.gnm1.ann1.H6EN9A Arachis hypogaea HOM05D003720 ORTHO05D005312 2.9e-91 342.0 325 61.2
arahy.Tifrunner.gnm1.ann1.QKW76S Arachis hypogaea HOM05D003720 ORTHO05D005312 4.6e-81 308.1 174 85.6
arahy.Tifrunner.gnm1.ann1.UX9YIA Arachis hypogaea HOM05D003720 ORTHO05D005312 3.4e-76 292.0 483 41.4
arahy.Tifrunner.gnm1.ann1.XZYA5I Arachis hypogaea HOM05D003720 ORTHO05D005312 9.2e-74 283.9 203 70.9
FAN23G1240 Fragaria x ananassa HOM05D003720 ORTHO05D005312 5.8e-68 264.6 243 61.3
CDE07G0366 Ceratophyllum demersum HOM05D003720 ORTHO05D017820 1.7e-64 253.1 145 84.1
arahy.Tifrunner.gnm1.ann1.JURE59 Arachis hypogaea HOM05D003720 ORTHO05D005312 2.9e-51 209.1 119 87.4
GSVIVG01015441001 Vitis vinifera HOM05D003720 ORTHO05D005312 5.6e-39 168.3 260 43.1
Peaxi162Scf00256g00812 Petunia axillaris HOM05D003720 ORTHO05D017820 3.8e-35 155.6 86 88.4
unitig_22.g6633 Utricularia gibba HOM05D003720 ORTHO05D017820 5.3e-29 135.2 88 76.1
Nitab4.5_0002116g0020 Nicotiana tabacum HOM05D003720 ORTHO05D017820 9.3e-26 124.4 94 69.1
AagrBONN_evm.TU.Sc2ySwM_228.193 Anthoceros agrestis HOM05D011343 ORTHO05D016526 1.4e-21 110.5 618 23.0
Actinidia27749 Actinidia chinensis HOM05D003720 ORTHO05D053439 4.1e-21 109.0 176 40.3
Mapoly0060s0082 Marchantia polymorpha HOM05D011343 ORTHO05D016526 3.8e-19 102.4 596 22.8
Dinv41561 Davidia involucrata HOM05D003720 ORTHO05D017820 1.1e-15 90.9 79 59.5
TAR374G0606 Trochodendron aralioides HOM05D003720 ORTHO05D017820 9.7e-15 87.8 72 66.7
Actinidia27748 Actinidia chinensis HOM05D003720 ORTHO05D057109 4.8e-14 85.5 70 65.7
arahy.Tifrunner.gnm1.ann1.7C8SEE Arachis hypogaea HOM05D003720 ORTHO05D005312 8.2e-14 84.7 47 83.0
arahy.Tifrunner.gnm1.ann1.PTA25Z Arachis hypogaea HOM05D003720 ORTHO05D005312 8.2e-14 84.7 47 83.0
Pp3c2_7460 Physcomitrium patens HOM05D011343 ORTHO05D016526 1.1e-13 84.3 619 22.6
Pp3c1_31160 Physcomitrium patens HOM05D011343 ORTHO05D016526 4.1e-13 82.4 210 29.5
Pp3c3_16200 Physcomitrium patens HOM05D011343 ORTHO05D016526 2.0e-12 80.1 258 26.7
CBR_g37703 Chara braunii HOM05D011343 ORTHO05D016526 3.8e-11 75.9 238 26.5
SEGI_29173 Sequoiadendron giganteum HOM05D011343 ORTHO05D016526 3.8e-11 75.9 279 26.5
Pp3c12_5580 Physcomitrium patens HOM05D011343 ORTHO05D016526 3.6e-09 69.3 281 23.5
Pp3c3_6660 Physcomitrium patens HOM05D003720 ORTHO05D005312 3.6e-09 69.3 66 51.5
Lsat_1_v5_gn_7_20540 Lactuca sativa HOM05D003720 ORTHO05D007744 4.7e-09 68.9 43 83.7
Lsat_1_v5_gn_1_94860 Lactuca sativa HOM05D003720 ORTHO05D017820 7.9e-09 68.2 45 82.2
SMO143G0325 Selaginella moellendorffii HOM05D011343 ORTHO05D016526 8.8e-08 64.7 223 23.3
FvH4_5g24770 Fragaria vesca HOM05D067251 ORTHO05D017820 2.0e-07 63.5 82 52.4
Pp3c3_6650 Physcomitrium patens HOM05D003720 ORTHO05D318947 2.8e-06 59.7 82 43.9


User provided reference genes

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