Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 3.8e-221 771.2 382 100.0
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 1.7e-115 420.2 333 61.6
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 8.2e-115 417.9 333 61.3
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 3.1e-114 416.0 376 57.7
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 7.0e-114 414.8 317 63.7
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 1.5e-113 413.7 329 61.7
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 2.6e-113 412.9 334 60.2
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 3.5e-113 412.5 311 63.0
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 4.5e-113 412.1 300 65.7
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 2.9e-112 409.5 316 61.7
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 8.5e-112 407.9 317 62.5
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 4.2e-111 405.6 316 63.0
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 9.4e-111 404.4 316 62.0
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 2.7e-110 402.9 318 63.2
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 3.6e-110 402.5 301 64.1
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 3.6e-110 402.5 303 63.4
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 6.1e-110 401.7 317 63.7
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 6.1e-110 401.7 303 64.0
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.4e-109 400.6 316 61.1
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 1.8e-109 400.2 303 63.4
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 3.9e-109 399.1 310 61.6
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 8.8e-109 397.9 302 62.6
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 2.6e-108 396.4 299 64.2
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 2.6e-108 396.4 338 57.4
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 3.3e-108 396.0 298 63.4
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 4.4e-108 395.6 303 63.0
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 9.7e-108 394.4 302 63.2
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 9.7e-108 394.4 333 59.2
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.3e-107 394.0 301 63.1
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 2.2e-107 393.3 302 62.3
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 2.2e-107 393.3 302 62.3
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 2.8e-107 392.9 325 59.7
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 8.2e-107 391.3 299 61.2
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 1.4e-106 390.6 368 55.7
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 1.4e-106 390.6 377 53.8
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 1.8e-106 390.2 306 61.4
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 2.4e-106 389.8 316 60.1
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 3.1e-106 389.4 303 61.4
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 4.1e-106 389.0 331 58.3
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 9.1e-106 387.9 316 59.8
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 9.1e-106 387.9 311 60.1
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 9.1e-106 387.9 349 56.2
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 1.6e-105 387.1 339 55.8
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.0e-105 386.7 351 55.8
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 4.5e-105 385.6 324 57.7
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 5.9e-105 385.2 349 56.2
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 5.9e-105 385.2 370 52.2
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 1.0e-104 384.4 338 57.4
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 1.3e-104 384.0 377 52.0
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 1.3e-104 384.0 368 52.7
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 1.7e-104 383.6 308 59.4
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 2.9e-104 382.9 308 59.7
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 2.9e-104 382.9 370 51.6
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 3.8e-104 382.5 372 53.0
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 5.0e-104 382.1 324 57.4
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 8.5e-104 381.3 312 59.3
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 1.1e-103 380.9 308 59.4
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 3.2e-103 379.4 339 55.8
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 3.2e-103 379.4 335 55.8
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 3.2e-103 379.4 302 60.6
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 4.2e-103 379.0 339 54.6
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 5.5e-103 378.6 338 58.0
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 1.2e-102 377.5 301 59.8
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 1.2e-102 377.5 310 60.3
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 2.1e-102 376.7 334 55.4
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 3.6e-102 375.9 305 60.0
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 4.7e-102 375.6 303 60.1
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 4.7e-102 375.6 303 60.1
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 6.1e-102 375.2 302 60.6
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 1.4e-101 374.0 311 60.5
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 1.5e-100 370.5 377 51.7
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 2.0e-100 370.2 304 58.6
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 2.6e-100 369.8 303 59.7
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 4.4e-100 369.0 302 59.3
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 2.2e-99 366.7 310 56.8
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 2.8e-99 366.3 301 58.1
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 3.1e-98 362.8 376 51.3
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 3.5e-97 359.4 332 54.5
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 7.7e-97 358.2 367 50.7
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 7.2e-95 351.7 335 53.1
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 2.1e-94 350.1 334 53.9
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 6.1e-94 348.6 314 54.8
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 2.3e-93 346.7 313 58.1
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.4e-92 342.8 286 58.7
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 4.4e-92 342.4 302 56.3
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 5.7e-92 342.0 375 49.1
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 7.5e-92 341.7 269 59.9
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 9.8e-92 341.3 272 60.3
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 2.8e-91 339.7 279 60.6
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 3.7e-91 339.3 317 53.9
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 2.0e-89 333.6 294 56.1
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 2.1e-86 323.6 277 58.5
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 4.9e-83 312.4 297 51.9
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 1.1e-82 311.2 303 53.1
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 1.0e-80 304.7 267 56.9
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 1.7e-80 303.9 327 51.1
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 5.6e-79 298.9 303 51.5
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 3.1e-77 293.1 310 45.8
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 5.8e-76 288.9 225 63.1
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.2e-75 287.0 310 51.3
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 2.3e-72 276.9 507 37.7
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 2.3e-72 276.9 303 45.2
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 8.6e-72 275.0 302 45.7
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 1.9e-71 273.9 324 43.2
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.3e-64 251.1 260 51.2
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 3.5e-57 226.5 161 68.9
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 5.1e-56 222.6 173 61.3
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.0e-52 210.7 199 53.3
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 1.9e-50 204.1 174 56.3
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 2.6e-44 183.7 182 52.7
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.1e-38 164.1 149 53.7
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 8.1e-38 162.2 157 51.0
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 5.3e-37 159.5 136 55.9
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 3.8e-35 153.3 129 55.8
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 2.7e-33 147.1 165 47.3
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 1.0e-32 145.2 179 45.8
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 8.7e-32 142.1 170 44.7
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 1.5e-31 141.4 170 44.7
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 6.2e-30 136.0 111 59.5
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 2.5e-26 124.0 196 32.7
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 9.3e-26 122.1 110 56.4
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 9.3e-26 122.1 130 52.3
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 1.3e-22 111.7 191 30.9
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 5.5e-10 69.7 41 65.9
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 5.5e-10 69.7 41 65.9
Cre16.g659850 Chlamydomonas reinhardtii HOM05D006137 ORTHO05D007697 3.9e-08 63.5 200 27.0
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 2.8e-06 57.4 31 67.7
Mapoly0035s0139 Marchantia polymorpha HOM05D002058 ORTHO05D003758 2.8e-06 57.4 104 35.6
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 2.8e-06 57.4 139 28.8
AagrBONN_evm.TU.Sc2ySwM_117.1659 Anthoceros agrestis HOM05D002058 ORTHO05D003758 4.8e-06 56.6 142 27.5
PGSC0003DMG400016553 Solanum tuberosum HOM05D002058 ORTHO05D003758 6.3e-06 56.2 121 28.9
SEGI_36463 Sequoiadendron giganteum HOM05D002058 ORTHO05D009216 8.2e-06 55.8 122 32.8


User provided reference genes

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