Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 2.2e-91 339.0 176 100.0
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 1.3e-59 233.4 160 75.0
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 6.6e-59 231.1 167 70.1
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 2.5e-58 229.2 152 77.6
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 5.6e-58 228.0 146 78.8
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.6e-57 226.5 146 78.1
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 3.4e-55 218.8 155 68.4
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 5.7e-55 218.0 162 69.1
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 7.5e-55 217.6 154 68.8
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 9.8e-55 217.2 152 70.4
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 9.8e-55 217.2 168 64.3
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 2.2e-54 216.1 162 66.7
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 4.9e-54 214.9 152 68.4
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 6.4e-54 214.5 146 70.5
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 6.4e-54 214.5 165 65.5
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 8.3e-54 214.2 165 66.7
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.1e-53 213.8 156 67.3
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 1.4e-53 213.4 146 71.2
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 1.8e-53 213.0 160 67.5
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 1.8e-53 213.0 146 71.2
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 1.8e-53 213.0 146 70.5
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 2.4e-53 212.6 155 66.5
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 4.1e-53 211.8 169 64.5
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 9.2e-53 210.7 148 69.6
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 9.2e-53 210.7 146 70.5
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 1.2e-52 210.3 151 68.9
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 1.2e-52 210.3 171 60.8
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.6e-52 209.9 168 62.5
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 2.0e-52 209.5 146 68.5
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 2.0e-52 209.5 165 63.6
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 2.7e-52 209.1 147 68.0
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 4.6e-52 208.4 156 63.5
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 4.6e-52 208.4 146 70.5
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 4.6e-52 208.4 157 66.9
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 4.6e-52 208.4 146 69.9
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 5.9e-52 208.0 146 68.5
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 5.9e-52 208.0 149 69.1
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 7.8e-52 207.6 151 66.2
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 7.8e-52 207.6 146 69.9
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 7.8e-52 207.6 146 69.9
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 7.8e-52 207.6 165 62.4
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 1.3e-51 206.8 156 66.0
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 2.3e-51 206.1 156 63.5
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 2.3e-51 206.1 149 67.1
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 3.0e-51 205.7 151 68.9
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 3.0e-51 205.7 146 67.8
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 3.0e-51 205.7 146 69.2
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 3.9e-51 205.3 146 67.1
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 3.9e-51 205.3 146 67.8
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 3.9e-51 205.3 146 67.1
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 3.9e-51 205.3 146 68.5
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 5.0e-51 204.9 162 65.4
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 5.0e-51 204.9 164 63.4
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 6.6e-51 204.5 146 67.1
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 6.6e-51 204.5 143 69.2
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 6.6e-51 204.5 155 65.2
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 6.6e-51 204.5 156 66.0
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 8.6e-51 204.1 146 69.9
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 8.6e-51 204.1 156 64.1
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 8.6e-51 204.1 146 67.8
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 8.6e-51 204.1 146 68.5
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 1.1e-50 203.8 146 67.8
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 1.1e-50 203.8 145 68.3
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 1.5e-50 203.4 151 65.6
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 1.5e-50 203.4 151 65.6
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 1.5e-50 203.4 156 62.8
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 1.5e-50 203.4 146 65.8
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 1.9e-50 203.0 160 61.9
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.9e-50 203.0 150 64.7
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 1.9e-50 203.0 152 67.1
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 1.9e-50 203.0 156 68.6
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 2.5e-50 202.6 151 66.2
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 2.5e-50 202.6 146 68.5
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 3.3e-50 202.2 146 66.4
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 3.3e-50 202.2 146 67.1
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 3.3e-50 202.2 148 68.9
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 4.3e-50 201.8 160 61.2
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 4.3e-50 201.8 146 66.4
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 4.3e-50 201.8 146 67.1
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 5.6e-50 201.4 158 65.8
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 7.3e-50 201.1 151 65.6
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 7.3e-50 201.1 149 67.8
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 7.3e-50 201.1 146 67.1
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 7.3e-50 201.1 146 65.8
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 9.5e-50 200.7 146 67.8
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 9.5e-50 200.7 157 65.0
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 9.5e-50 200.7 150 66.0
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 1.2e-49 200.3 171 57.9
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 1.6e-49 199.9 146 66.4
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 2.1e-49 199.5 146 68.5
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 2.8e-49 199.1 151 65.6
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 2.8e-49 199.1 146 69.2
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 2.8e-49 199.1 157 63.7
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 2.8e-49 199.1 181 58.0
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 2.8e-49 199.1 146 66.4
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 3.6e-49 198.7 151 65.6
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 6.2e-49 198.0 146 67.1
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 6.2e-49 198.0 152 65.1
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 8.0e-49 197.6 174 58.0
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 8.0e-49 197.6 146 67.8
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 1.1e-48 197.2 152 64.5
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 1.1e-48 197.2 146 66.4
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 1.4e-48 196.8 146 67.8
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 5.2e-48 194.9 155 60.6
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 8.9e-48 194.1 152 60.5
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 1.5e-47 193.4 146 63.7
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 4.9e-46 188.3 152 59.9
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.9e-45 186.4 148 63.5
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 2.4e-45 186.0 152 63.2
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.0e-44 183.0 179 56.4
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 6.0e-44 181.4 151 57.6
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 8.6e-43 177.6 158 53.8
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.1e-42 177.2 146 63.0
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 1.5e-42 176.8 202 50.0
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 2.5e-42 176.0 146 61.6
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 7.3e-42 174.5 132 65.2
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 9.5e-42 174.1 162 57.4
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 1.2e-41 173.7 148 61.5
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 4.7e-41 171.8 146 58.9
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 8.1e-41 171.0 153 59.5
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 8.9e-40 167.5 146 59.6
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.9e-38 162.5 146 57.5
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 3.2e-37 159.1 188 48.9
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 2.1e-36 156.4 123 61.8
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 6.0e-36 154.8 147 58.5
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 7.8e-36 154.5 120 61.7
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 2.3e-35 152.9 109 68.8
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 6.6e-35 151.4 162 50.6
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 6.6e-35 151.4 148 52.7
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 1.1e-34 150.6 125 54.4
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.6e-33 146.7 97 71.1
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 3.6e-33 145.6 156 51.9
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 3.1e-32 142.5 112 63.4
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 1.2e-31 140.6 106 67.0
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 2.9e-30 136.0 98 66.3
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 4.1e-29 132.1 155 46.5
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 4.6e-28 128.6 110 62.7
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 9.6e-26 120.9 106 58.5
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 2.8e-25 119.4 97 60.8
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 9.0e-24 114.4 157 40.1
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 1.5e-23 113.6 86 65.1
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 3.4e-23 112.5 81 70.4
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 7.6e-23 111.3 148 44.6
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 4.2e-21 105.5 170 37.6
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 1.0e-19 100.9 88 56.8
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.1e-18 97.4 66 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 9.6e-18 94.4 73 67.1
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 1.7e-14 83.6 152 35.5
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 3.8e-14 82.4 59 67.8
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 3.8e-14 82.4 59 67.8
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 4.9e-14 82.0 51 70.6
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 1.1e-13 80.9 150 37.3
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 1.2e-12 77.4 47 74.5
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 1.2e-12 77.4 190 30.0
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 1.5e-10 70.5 108 46.3
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 7.4e-10 68.2 49 69.4
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 1.1e-08 64.3 45 64.4
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 5.3e-08 62.0 49 59.2


User provided reference genes

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