Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 5.9e-58 227.3 110 100.0
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.4e-35 152.1 75 97.3
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 9.2e-35 150.2 101 73.3
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 9.2e-35 150.2 101 73.3
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.4e-19 99.8 109 53.2
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 3.2e-19 98.6 105 54.3
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 7.1e-19 97.4 112 50.9
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 9.2e-19 97.1 95 50.5
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.6e-18 96.3 97 55.7
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.6e-18 96.3 106 50.0
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.1e-18 95.9 105 48.6
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 2.7e-18 95.5 93 52.7
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.7e-18 95.5 109 50.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.6e-18 94.7 90 54.4
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 6.0e-18 94.4 95 51.6
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.0e-17 93.6 90 54.4
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.7e-17 92.8 109 49.5
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.7e-17 92.8 99 49.5
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.7e-17 92.8 95 53.7
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.3e-17 92.4 102 49.0
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 5.1e-17 91.3 108 50.9
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 5.1e-17 91.3 101 51.5
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 8.7e-17 90.5 106 50.0
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.1e-16 90.1 90 54.4
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.1e-16 90.1 90 54.4
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.1e-16 90.1 90 54.4
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.1e-16 90.1 90 54.4
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.1e-16 90.1 104 48.1
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.5e-16 89.7 95 50.5
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.9e-16 89.4 107 50.5
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.9e-16 89.4 81 53.1
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.9e-16 89.4 92 50.0
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 2.5e-16 89.0 88 50.0
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.3e-16 88.6 96 51.0
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 3.3e-16 88.6 90 52.2
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 4.3e-16 88.2 102 47.1
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.6e-16 87.8 107 48.6
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 7.3e-16 87.4 97 47.4
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 7.3e-16 87.4 92 48.9
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 9.6e-16 87.0 92 52.2
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 9.6e-16 87.0 93 52.7
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.2e-15 86.7 98 51.0
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.2e-15 86.7 92 52.2
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.2e-15 86.7 106 48.1
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.2e-15 86.7 102 48.0
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.6e-15 86.3 109 46.8
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 2.8e-15 85.5 83 54.2
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 2.8e-15 85.5 111 49.5
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.6e-15 85.1 96 50.0
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 6.2e-15 84.3 96 47.9
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 6.2e-15 84.3 94 53.2
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 8.1e-15 84.0 94 48.9
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-14 83.2 99 47.5
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-14 83.2 95 48.4
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.4e-14 83.2 92 48.9
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.8e-14 82.8 90 50.0
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.8e-14 82.8 93 53.8
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.8e-14 82.8 93 55.9
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.8e-14 82.8 96 51.0
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.4e-14 82.4 92 52.2
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.1e-14 82.0 97 48.5
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 3.1e-14 82.0 104 48.1
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 3.1e-14 82.0 92 50.0
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 3.1e-14 82.0 109 49.5
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 5.2e-14 81.3 93 49.5
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 5.2e-14 81.3 91 50.5
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 5.2e-14 81.3 99 47.5
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.9e-14 80.9 96 46.9
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 6.9e-14 80.9 99 46.5
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.2e-13 80.1 93 53.8
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.5e-13 79.7 95 46.3
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.5e-13 79.7 95 46.3
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.5e-13 79.7 92 51.1
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.5e-13 79.7 114 47.4
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.5e-13 79.7 91 49.5
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.6e-13 79.0 114 45.6
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.6e-13 79.0 96 50.0
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 2.6e-13 79.0 80 50.0
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.4e-13 78.6 94 46.8
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 3.4e-13 78.6 114 45.6
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 3.4e-13 78.6 105 42.9
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 4.4e-13 78.2 101 51.5
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 4.4e-13 78.2 104 48.1
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 5.8e-13 77.8 104 46.2
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 7.6e-13 77.4 96 47.9
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 9.9e-13 77.0 85 47.1
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 9.9e-13 77.0 85 54.1
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.3e-12 76.6 100 48.0
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.7e-12 76.3 105 44.8
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.7e-12 76.3 98 44.9
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.7e-12 76.3 80 47.5
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 2.9e-12 75.5 91 45.1
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 2.9e-12 75.5 98 44.9
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.9e-12 75.5 99 45.5
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 4.9e-12 74.7 93 47.3
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 4.9e-12 74.7 93 51.6
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 6.4e-12 74.3 99 43.4
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 8.4e-12 73.9 106 43.4
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.1e-11 73.6 95 45.3
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.1e-11 73.6 99 48.5
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.4e-11 73.2 103 40.8
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.9e-11 72.8 97 46.4
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 1.9e-11 72.8 102 46.1
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.9e-11 72.8 105 43.8
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.4e-11 72.4 95 43.2
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.4e-11 72.4 105 41.0
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.4e-11 72.4 90 47.8
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.4e-11 72.4 88 52.3
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 2.4e-11 72.4 88 52.3
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 3.2e-11 72.0 96 41.7
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 3.2e-11 72.0 91 47.3
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.2e-11 72.0 102 45.1
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.2e-11 71.6 102 45.1
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 5.4e-11 71.2 83 44.6
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.2e-10 70.1 102 45.1
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.2e-10 70.1 96 44.8
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.2e-10 70.1 88 45.5
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.6e-10 69.7 94 41.5
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.6e-10 69.7 96 41.7
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.7e-10 68.9 109 44.0
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 3.5e-10 68.6 101 39.6
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.5e-10 68.6 96 47.9
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 3.5e-10 68.6 94 43.6
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 4.6e-10 68.2 105 40.0
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 6.0e-10 67.8 94 40.4
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 6.0e-10 67.8 106 43.4
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 6.0e-10 67.8 106 43.4
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 6.0e-10 67.8 102 41.2
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 6.0e-10 67.8 111 40.5
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 6.0e-10 67.8 99 40.4
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 7.8e-10 67.4 105 38.1
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 7.8e-10 67.4 110 39.1
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.0e-09 67.0 101 38.6
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.0e-09 67.0 101 38.6
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.0e-09 67.0 105 38.1
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.0e-09 67.0 91 46.2
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-09 66.6 105 37.1
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.3e-09 66.6 105 37.1
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.3e-09 66.6 86 41.9
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-09 66.6 89 44.9
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.3e-09 66.6 105 40.0
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.7e-09 66.2 105 36.2
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.7e-09 66.2 105 37.1
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.7e-09 66.2 84 44.0
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.7e-09 66.2 96 41.7
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.3e-09 65.9 107 37.4
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.0e-09 65.5 89 41.6
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 3.9e-09 65.1 94 39.4
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 3.9e-09 65.1 106 42.5
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 3.9e-09 65.1 71 47.9
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 5.1e-09 64.7 87 40.2
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 5.1e-09 64.7 104 41.3
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 6.6e-09 64.3 101 41.6
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.1e-08 63.5 106 35.8
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 1.5e-08 63.2 86 38.4
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.5e-08 63.2 99 37.4
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 1.5e-08 63.2 68 44.1
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.5e-08 63.2 99 37.4
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.5e-08 63.2 95 43.2
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.5e-08 62.4 101 36.6
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 3.3e-08 62.0 94 36.2
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.3e-08 62.0 88 43.2
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 4.3e-08 61.6 96 37.5
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 4.3e-08 61.6 96 37.5
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.3e-08 61.6 88 44.3
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.3e-08 61.6 88 39.8
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 7.3e-08 60.8 100 37.0
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 9.6e-08 60.5 60 50.0
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 9.6e-08 60.5 94 40.4
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.3e-07 60.1 83 38.6
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.3e-07 60.1 83 41.0
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 1.3e-07 60.1 108 36.1
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.3e-07 60.1 106 42.5
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.6e-07 59.7 106 42.5
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 2.8e-07 58.9 103 41.7
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.2e-07 57.8 104 39.4
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 8.1e-07 57.4 83 41.0
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.4e-06 56.6 95 38.9
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.8e-06 56.2 107 34.6
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.8e-06 56.2 97 35.1
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 2.4e-06 55.8 94 45.7
HPP92_028110 Vanilla planifolia HOM05D003592 ORTHO05D429145 3.1e-06 55.5 74 41.9


User provided reference genes

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