Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.5e-104 382.9 197 100.0
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.9e-52 208.8 190 58.4
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 8.2e-26 121.3 202 44.6
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.8e-25 120.2 178 47.8
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 5.0e-23 112.1 217 39.6
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 7.2e-22 108.2 216 38.0
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.2e-21 107.5 190 42.6
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 2.7e-21 106.3 217 37.3
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 3.6e-21 105.9 209 38.8
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 7.9e-21 104.8 200 41.0
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.9e-21 104.8 156 42.9
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.0e-20 104.4 206 37.9
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.8e-20 103.6 217 37.8
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 3.9e-20 102.4 221 36.2
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.1e-20 102.1 150 44.7
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.1e-20 102.1 150 44.7
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 8.8e-20 101.3 222 38.7
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 1.1e-19 100.9 137 40.9
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 2.0e-19 100.1 210 38.1
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 2.0e-19 100.1 215 38.6
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.6e-19 99.8 225 37.3
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 3.3e-19 99.4 210 38.1
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 4.4e-19 99.0 152 42.8
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 4.4e-19 99.0 223 35.9
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 4.4e-19 99.0 223 35.9
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 4.4e-19 99.0 218 39.0
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.7e-19 97.8 104 49.0
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 9.7e-19 97.8 218 37.2
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.3e-18 97.4 213 38.0
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.3e-18 97.4 213 38.0
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 1.3e-18 97.4 210 38.1
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.3e-18 97.4 230 35.7
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.2e-18 96.7 203 40.9
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 3.7e-18 95.9 100 55.0
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.7e-18 95.9 137 38.0
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 6.3e-18 95.1 141 39.0
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 8.2e-18 94.7 104 51.9
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 8.2e-18 94.7 145 42.8
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.4e-17 94.0 207 39.1
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.4e-17 94.0 97 58.8
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.4e-17 93.2 217 36.4
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.4e-17 93.2 228 35.5
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 3.1e-17 92.8 205 36.6
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.1e-17 92.4 194 35.1
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 4.1e-17 92.4 194 35.1
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.1e-17 92.4 198 39.4
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.3e-17 92.0 207 33.8
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 5.3e-17 92.0 217 35.5
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 9.1e-17 91.3 214 38.8
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 9.1e-17 91.3 139 44.6
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.5e-16 90.5 206 38.8
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.0e-16 90.1 204 36.8
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 3.5e-16 89.4 202 38.1
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 3.5e-16 89.4 213 38.0
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.5e-16 89.4 202 38.1
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 3.5e-16 89.4 154 42.9
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.5e-16 89.0 103 53.4
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 5.9e-16 88.6 137 39.4
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.9e-16 88.6 233 34.3
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 7.7e-16 88.2 208 35.6
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.7e-16 88.2 211 32.7
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 1.0e-15 87.8 107 45.8
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.3e-15 87.4 92 43.5
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.7e-15 87.0 220 34.5
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.7e-15 87.0 152 39.5
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.7e-15 87.0 233 34.3
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.7e-15 87.0 198 37.4
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 2.2e-15 86.7 221 30.8
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.2e-15 86.7 145 39.3
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 3.8e-15 85.9 212 35.8
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 5.0e-15 85.5 190 34.2
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 5.0e-15 85.5 181 35.4
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.1e-14 84.3 107 49.5
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.1e-14 84.3 205 32.7
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 1.1e-14 84.3 217 29.0
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.1e-14 84.3 204 35.3
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.9e-14 83.6 130 46.2
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 3.2e-14 82.8 133 44.4
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 7.2e-14 81.6 191 33.0
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 7.2e-14 81.6 223 34.1
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 7.2e-14 81.6 145 41.4
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 7.2e-14 81.6 201 32.3
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.2e-13 80.9 182 34.1
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.2e-13 80.9 197 35.5
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.2e-13 80.9 193 36.8
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.6e-13 80.5 94 50.0
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.6e-13 80.5 192 31.8
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.7e-13 79.7 158 39.9
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 2.7e-13 79.7 186 37.6
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 2.7e-13 79.7 178 34.8
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 2.7e-13 79.7 178 34.8
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.7e-13 79.7 188 33.5
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 2.7e-13 79.7 104 42.3
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 3.6e-13 79.3 186 32.8
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.7e-13 79.0 102 42.2
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 6.1e-13 78.6 112 43.8
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 8.0e-13 78.2 227 30.8
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.0e-12 77.8 182 33.0
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.0e-12 77.8 182 33.0
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.0e-12 77.8 227 31.3
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.4e-12 77.4 102 41.2
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.8e-12 77.0 211 29.9
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.8e-12 77.0 227 32.6
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 5.2e-12 75.5 208 36.1
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 5.2e-12 75.5 113 38.1
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 6.7e-12 75.1 195 30.8
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 1.1e-11 74.3 204 34.3
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 1.1e-11 74.3 204 34.3
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 1.1e-11 74.3 204 34.3
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 2.0e-11 73.6 188 36.2
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.0e-11 73.6 211 28.9
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.6e-11 73.2 203 36.0
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 3.3e-11 72.8 187 30.5
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.3e-11 72.8 227 30.0
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 4.4e-11 72.4 120 38.3
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 5.7e-11 72.0 204 31.4
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 5.7e-11 72.0 204 31.4
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.7e-11 72.0 134 37.3
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 7.4e-11 71.6 202 37.1
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 7.4e-11 71.6 181 32.6
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 7.4e-11 71.6 188 33.0
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 2.2e-10 70.1 204 31.4
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 4.8e-10 68.9 201 33.8
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 6.3e-10 68.6 111 44.1
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 6.3e-10 68.6 86 45.3
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.3e-10 68.6 163 32.5
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.1e-09 67.8 47 59.6
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.4e-09 67.4 47 59.6
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.8e-09 67.0 210 31.0
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.8e-09 67.0 140 38.6
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 2.4e-09 66.6 188 31.4
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 2.4e-09 66.6 188 31.4
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.1e-09 66.2 185 33.0
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 4.1e-09 65.9 217 30.0
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 7.0e-09 65.1 205 29.3
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.0e-08 63.5 202 33.2
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.6e-08 63.2 50 56.0
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.6e-08 63.2 205 32.2
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 3.5e-08 62.8 180 31.7
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 3.5e-08 62.8 90 41.1
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 7.7e-08 61.6 108 34.3
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.3e-07 60.8 190 32.6
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 1.5e-06 57.4 48 54.2
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.5e-06 57.4 81 40.7
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.9e-06 57.0 44 56.8
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.5e-06 56.6 144 29.9
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.5e-06 56.6 48 54.2
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 3.2e-06 56.2 89 34.8
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 3.2e-06 56.2 211 28.4


User provided reference genes

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