Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.2e-45 186.0 88 100.0
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 6.7e-12 73.9 50 66.0
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 6.7e-12 73.9 50 66.0
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.1e-11 73.2 52 59.6
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.0e-11 72.4 48 66.7
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.0e-11 72.4 48 66.7
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 2.0e-11 72.4 48 64.6
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 3.3e-11 71.6 65 50.8
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 4.3e-11 71.2 52 59.6
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.3e-11 71.2 52 57.7
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 5.7e-11 70.9 52 57.7
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 5.7e-11 70.9 48 66.7
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 5.7e-11 70.9 52 57.7
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 5.7e-11 70.9 52 57.7
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 5.7e-11 70.9 52 57.7
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 7.4e-11 70.5 173 29.5
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 7.4e-11 70.5 52 59.6
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.3e-10 69.7 50 66.0
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.7e-10 69.3 52 55.8
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.7e-10 69.3 48 64.6
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.7e-10 69.3 48 64.6
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.7e-10 69.3 50 64.0
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.7e-10 69.3 50 62.0
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 2.2e-10 68.9 48 60.4
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.2e-10 68.9 52 55.8
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.2e-10 68.9 48 60.4
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.8e-10 68.6 44 70.5
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.7e-10 68.2 48 62.5
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 4.8e-10 67.8 52 55.8
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 4.8e-10 67.8 52 55.8
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 4.8e-10 67.8 52 57.7
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.8e-10 67.8 48 62.5
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 6.3e-10 67.4 52 55.8
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 6.3e-10 67.4 52 55.8
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.2e-10 67.0 54 53.7
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 8.2e-10 67.0 52 55.8
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 8.2e-10 67.0 48 62.5
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 8.2e-10 67.0 52 55.8
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 8.2e-10 67.0 50 60.0
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 1.1e-09 66.6 71 46.5
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.1e-09 66.6 52 53.8
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.1e-09 66.6 50 56.0
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.4e-09 66.2 48 58.3
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.8e-09 65.9 48 62.5
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.8e-09 65.9 46 63.0
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 2.4e-09 65.5 51 56.9
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 2.4e-09 65.5 48 58.3
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 3.1e-09 65.1 48 58.3
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 3.1e-09 65.1 50 58.0
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 4.1e-09 64.7 52 53.8
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 4.1e-09 64.7 48 60.4
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.1e-09 64.7 44 65.9
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 5.3e-09 64.3 48 56.2
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 5.3e-09 64.3 48 56.2
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 5.3e-09 64.3 48 58.3
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 5.3e-09 64.3 47 63.8
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 5.3e-09 64.3 48 56.2
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 6.9e-09 63.9 48 56.2
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 6.9e-09 63.9 52 55.8
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 6.9e-09 63.9 44 65.9
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 9.1e-09 63.5 48 58.3
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 9.1e-09 63.5 48 56.2
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.2e-08 63.2 52 51.9
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.5e-08 62.8 48 54.2
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 2.0e-08 62.4 52 51.9
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 2.0e-08 62.4 44 61.4
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 2.0e-08 62.4 44 61.4
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 2.0e-08 62.4 44 61.4
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 2.0e-08 62.4 44 59.1
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 2.6e-08 62.0 44 61.4
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 2.6e-08 62.0 48 54.2
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 2.6e-08 62.0 52 51.9
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.6e-08 62.0 48 56.2
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 3.4e-08 61.6 44 61.4
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 4.5e-08 61.2 44 61.4
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 4.5e-08 61.2 44 61.4
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 4.5e-08 61.2 52 53.8
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.5e-08 61.2 44 61.4
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 4.5e-08 61.2 52 53.8
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 5.9e-08 60.8 48 54.2
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 5.9e-08 60.8 44 56.8
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 7.7e-08 60.5 44 61.4
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 7.7e-08 60.5 48 56.2
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 7.7e-08 60.5 48 56.2
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 7.7e-08 60.5 48 56.2
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 7.7e-08 60.5 48 56.2
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 7.7e-08 60.5 48 56.2
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 7.7e-08 60.5 48 56.2
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 7.7e-08 60.5 44 59.1
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 7.7e-08 60.5 52 48.1
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.0e-07 60.1 48 56.2
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 1.0e-07 60.1 38 71.1
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.0e-07 60.1 48 56.2
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.0e-07 60.1 44 56.8
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.3e-07 59.7 47 57.4
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.3e-07 59.7 73 41.1
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.7e-07 59.3 50 52.0
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 1.7e-07 59.3 48 52.1
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 1.7e-07 59.3 48 52.1
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.2e-07 58.9 44 59.1
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 2.2e-07 58.9 48 54.2
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 2.2e-07 58.9 44 59.1
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.9e-07 58.5 44 59.1
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.9e-07 58.5 48 52.1
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 6.5e-07 57.4 44 56.8
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.5e-07 57.0 44 52.3
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 8.5e-07 57.0 44 52.3
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 8.5e-07 57.0 48 52.1
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.1e-06 56.6 49 55.1
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 1.4e-06 56.2 73 39.7
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.9e-06 55.8 52 46.2
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 2.5e-06 55.5 44 52.3
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 2.5e-06 55.5 44 52.3
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 3.2e-06 55.1 37 67.6
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 4.2e-06 54.7 44 54.5
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 4.2e-06 54.7 44 54.5
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 4.2e-06 54.7 44 52.3
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.5e-06 54.3 48 52.1
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 9.4e-06 53.5 44 47.7


User provided reference genes

Program Settings