Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014512 Vanilla planifolia HOM05D000644 ORTHO05D018524 2.4e-51 205.3 108 100.0
TAR629G1536 Trochodendron aralioides HOM05D000644 ORTHO05D000504 8.5e-17 90.5 116 48.3
GSVIVG01028842001 Vitis vinifera HOM05D000644 ORTHO05D000504 4.2e-16 88.2 89 60.7
FAN03G0294 Fragaria x ananassa HOM05D000644 ORTHO05D000504 1.8e-14 82.8 123 46.3
FAN03G3377 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.8e-14 82.8 123 46.3
vmacro09810 Vaccinium macrocarpon HOM05D000644 ORTHO05D000504 3.9e-14 81.6 86 57.0
FvH4_7g30340 Fragaria vesca HOM05D000644 ORTHO05D000504 5.2e-14 81.3 124 45.2
FAN06G0407 Fragaria x ananassa HOM05D000644 ORTHO05D000504 5.2e-14 81.3 124 45.2
FAN06G3760 Fragaria x ananassa HOM05D000644 ORTHO05D018524 5.2e-14 81.3 124 45.2
FAN10G1875 Fragaria x ananassa HOM05D000644 ORTHO05D000504 6.7e-14 80.9 124 45.2
Zm00001eb001900 Zea mays HOM05D000644 ORTHO05D000504 8.8e-14 80.5 83 61.4
AUR62021111 Chenopodium quinoa HOM05D000644 ORTHO05D000504 1.1e-13 80.1 88 55.7
Oeu036892.1 Olea europaea HOM05D000644 ORTHO05D000504 1.1e-13 80.1 124 45.2
RcHm_v2.0_Chr1g0378481 Rosa chinensis HOM05D000644 ORTHO05D000504 1.1e-13 80.1 91 54.9
CDE02G1922 Ceratophyllum demersum HOM05D000644 ORTHO05D000504 1.5e-13 79.7 82 54.9
AUR62031430 Chenopodium quinoa HOM05D000644 ORTHO05D000504 1.5e-13 79.7 88 56.8
FAN10G3256 Fragaria x ananassa HOM05D000644 ORTHO05D000504 1.5e-13 79.7 124 45.2
Prupe.2G301800 Prunus persica HOM05D000644 ORTHO05D000504 2.0e-13 79.3 81 58.0
Zm00001eb403660 Zea mays HOM05D000644 ORTHO05D000504 3.3e-13 78.6 83 61.4
Cc05_g02230 Coffea canephora HOM05D000644 ORTHO05D000504 5.7e-13 77.8 93 50.5
FvH4_7g30360 Fragaria vesca HOM05D000644 ORTHO05D000504 7.4e-13 77.4 105 48.6
FAN06G2329 Fragaria x ananassa HOM05D000644 ORTHO05D000504 7.4e-13 77.4 105 48.6
Manes.14G021600 Manihot esculenta HOM05D000644 ORTHO05D000504 7.4e-13 77.4 97 51.5
Haze_00054 Corylus avellana HOM05D000644 ORTHO05D000504 9.7e-13 77.0 86 53.5
Ciclev10006976m.g Citrus clementina HOM05D000644 ORTHO05D000504 1.3e-12 76.6 94 51.1
Os03g0125800 Oryza sativa ssp. japonica HOM05D000644 ORTHO05D000504 1.3e-12 76.6 116 51.7
Eucgr.K00296 Eucalyptus grandis HOM05D000644 ORTHO05D000504 1.7e-12 76.3 129 41.1
FAN01G1321 Fragaria x ananassa HOM05D000644 ORTHO05D000504 1.7e-12 76.3 105 48.6
Mapoly0045s0045 Marchantia polymorpha HOM05D000644 ORTHO05D000504 2.8e-12 75.5 111 44.1
Solyc03g007570.2 Solanum lycopersicum HOM05D000644 ORTHO05D000504 3.1e-11 72.0 110 47.3
Actinidia31842 Actinidia chinensis HOM05D000268 ORTHO05D000261 4.1e-11 71.6 75 57.3
Dinv35261 Davidia involucrata HOM05D000644 ORTHO05D000504 4.1e-11 71.6 62 62.9
QL09p012548 Quercus lobata HOM05D000644 ORTHO05D000504 4.1e-11 71.6 86 52.3
PGSC0003DMG400009496 Solanum tuberosum HOM05D000644 ORTHO05D000504 4.1e-11 71.6 110 47.3
CDE11G1128 Ceratophyllum demersum HOM05D000644 ORTHO05D000504 5.3e-11 71.2 43 81.4
Oeu027868.1 Olea europaea HOM05D000644 ORTHO05D000504 7.0e-11 70.9 99 47.5
QL09p012570 Quercus lobata HOM05D000644 ORTHO05D000504 9.1e-11 70.5 102 49.0
Rhsim09G0200900 Rhododendron simsii HOM05D000644 ORTHO05D000504 9.1e-11 70.5 93 50.5
Actinidia03139 Actinidia chinensis HOM05D000644 ORTHO05D000504 1.6e-10 69.7 75 54.7
Cpa.g.sc107.120 Carica papaya HOM05D000644 ORTHO05D000504 1.6e-10 69.7 64 57.8
Ah.07g206500 Amaranthus hybridus HOM05D000644 ORTHO05D000504 2.0e-10 69.3 80 52.5
Sopen03g003530 Solanum pennellii HOM05D000644 ORTHO05D000504 2.0e-10 69.3 110 46.4
ClCG05G008440 Citrullus lanatus HOM05D000644 ORTHO05D000504 2.6e-10 68.9 109 45.9
Eucgr.A02723 Eucalyptus grandis HOM05D000644 ORTHO05D000504 2.6e-10 68.9 104 46.2
Nitab4.5_0002637g0090 Nicotiana tabacum HOM05D000644 ORTHO05D000504 3.5e-10 68.6 91 47.3
MELO3C006957.2 Cucumis melo HOM05D000644 ORTHO05D000504 4.5e-10 68.2 92 47.8
CsaV3_3G017520 Cucumis sativus L. HOM05D000644 ORTHO05D000504 4.5e-10 68.2 92 46.7
Nitab4.5_0006014g0060 Nicotiana tabacum HOM05D000644 ORTHO05D000504 4.5e-10 68.2 91 47.3
PSO478G5300 Papaver somniferum HOM05D000644 ORTHO05D000504 4.5e-10 68.2 82 50.0
Peaxi162Scf00444g00245 Petunia axillaris HOM05D000644 ORTHO05D000504 7.7e-10 67.4 117 42.7
Nn1g04990 Nelumbo nucifera HOM05D000644 ORTHO05D000504 1.0e-09 67.0 108 41.7
Thecc.03G185400 Theobroma cacao HOM05D000644 ORTHO05D000504 1.3e-09 66.6 124 41.9
MD07G1279700 Malus domestica HOM05D000644 ORTHO05D000504 1.7e-09 66.2 64 59.4
Sed0020396 Sechium edule HOM05D000644 ORTHO05D000504 1.7e-09 66.2 88 51.1
Atru.chr1.343 Acer truncatum HOM05D000644 ORTHO05D000504 2.2e-09 65.9 63 63.5
Atru.ctg97_1.39 Acer truncatum HOM05D000644 ORTHO05D000504 2.2e-09 65.9 63 63.5
Manes.06G153200 Manihot esculenta HOM05D000644 ORTHO05D000504 2.2e-09 65.9 67 59.7
Potri.017G147900 Populus trichocarpa HOM05D000644 ORTHO05D000504 2.2e-09 65.9 50 68.0
Sabra17G0123600 Salix brachista HOM05D000644 ORTHO05D000504 2.9e-09 65.5 103 47.6
Lsat_1_v5_gn_9_56781 Lactuca sativa HOM05D000644 ORTHO05D000504 3.8e-09 65.1 85 50.6
Pp3c16_11920 Physcomitrium patens HOM05D000644 ORTHO05D000504 5.0e-09 64.7 41 73.2
Atru.chr1.344 Acer truncatum HOM05D000644 ORTHO05D000504 6.5e-09 64.3 63 63.5
QL09p012627 Quercus lobata HOM05D000644 ORTHO05D018524 6.5e-09 64.3 102 45.1
MSTRG.8704 Avicennia marina HOM05D000644 ORTHO05D000504 8.5e-09 63.9 124 37.9
CAN.G126.35 Capsicum annuum HOM05D000644 ORTHO05D000504 1.1e-08 63.5 93 48.4
A10p10260 Brassica napus HOM05D000644 ORTHO05D000504 2.5e-08 62.4 98 44.9
BraA10t43105Z Brassica rapa HOM05D000644 ORTHO05D000504 2.5e-08 62.4 98 44.9
COL.COLO4_30302 Corchorus olitorius HOM05D000644 ORTHO05D000504 2.5e-08 62.4 62 58.1
BcaC04g20538 Brassica carinata HOM05D000644 ORTHO05D000504 5.5e-08 61.2 98 44.9
C09p42390 Brassica napus HOM05D000644 ORTHO05D000504 5.5e-08 61.2 98 44.9
BolC9t57119H Brassica oleracea HOM05D000644 ORTHO05D000504 5.5e-08 61.2 98 44.9
BcaB08g35631 Brassica carinata HOM05D000644 ORTHO05D000504 7.2e-08 60.8 81 50.6
Duzib116G0387 Durio zibethinus HOM05D000644 ORTHO05D000504 7.2e-08 60.8 103 37.9
Gohir.D11G228100 Gossypium hirsutum HOM05D000644 ORTHO05D000504 9.4e-08 60.5 58 60.3
Gorai.003G069100 Gossypium raimondii HOM05D000644 ORTHO05D000504 9.4e-08 60.5 58 60.3
Hma1.2p1_0469F.1_g159120 Hydrangea macrophylla HOM05D000644 ORTHO05D000504 9.4e-08 60.5 63 54.0
SalBow4G0954 Salvia bowleyana HOM05D000644 ORTHO05D000504 1.2e-07 60.1 92 43.5
MBI16_g31222_MAGBIO Magnolia biondii HOM05D000644 ORTHO05D000504 2.7e-07 58.9 90 45.6
Cc02_g02300 Coffea canephora HOM05D000644 ORTHO05D000504 3.6e-07 58.5 90 47.8
CARHR036920 Cardamine hirsuta HOM05D000644 ORTHO05D000504 4.7e-07 58.2 95 41.1
CARHR265720 Cardamine hirsuta HOM05D000644 ORTHO05D000504 4.7e-07 58.2 76 50.0
COL.COLO4_26314 Corchorus olitorius HOM05D000644 ORTHO05D000504 4.7e-07 58.2 95 44.2
Migut.F00282 Erythranthe guttata HOM05D000644 ORTHO05D000504 4.7e-07 58.2 117 42.7
Peaxi162Scf00417g01346 Petunia axillaris HOM05D000644 ORTHO05D000504 4.7e-07 58.2 51 56.9
Pp3c24_10130 Physcomitrium patens HOM05D000644 ORTHO05D000504 4.7e-07 58.2 35 71.4
SEGI_28185 Sequoiadendron giganteum HOM05D000644 ORTHO05D000504 4.7e-07 58.2 80 46.2
TAR625G0154 Trochodendron aralioides HOM05D000644 ORTHO05D000504 4.7e-07 58.2 104 38.5
ATR0733G154 Amborella trichopoda HOM05D000644 ORTHO05D000504 6.1e-07 57.8 69 49.3
Lj8C16G2 Lonicera japonica HOM05D000644 ORTHO05D000504 6.1e-07 57.8 62 58.1
Lalb_Chr23g0266601 Lupinus albus HOM05D000644 ORTHO05D000504 6.1e-07 57.8 41 65.9
CAN.G1226.15 Capsicum annuum HOM05D000644 ORTHO05D000504 8.0e-07 57.4 51 54.9
Gohir.A11G222500 Gossypium hirsutum HOM05D000644 ORTHO05D000504 8.0e-07 57.4 58 56.9
vmacro04527 Vaccinium macrocarpon HOM05D000644 ORTHO05D000504 8.0e-07 57.4 39 66.7
Solyc04g080370.3 Solanum lycopersicum HOM05D000644 ORTHO05D000504 1.0e-06 57.0 51 54.9
Sopen04g033960 Solanum pennellii HOM05D000644 ORTHO05D000504 1.0e-06 57.0 51 54.9
Rhsim07G0239400 Rhododendron simsii HOM05D000644 ORTHO05D000504 1.4e-06 56.6 39 66.7
Aa31sc924G30 Aethionema arabicum HOM05D000644 ORTHO05D000504 1.8e-06 56.2 76 43.4
Glyma.04G032100 Glycine max HOM05D000644 ORTHO05D000504 1.8e-06 56.2 41 63.4
Glyma.06G032200 Glycine max HOM05D000644 ORTHO05D000504 1.8e-06 56.2 41 63.4
Lj1g0024698 Lotus japonicus HOM05D000644 ORTHO05D000504 1.8e-06 56.2 41 63.4
Psat5g017280 Pisum sativum HOM05D000644 ORTHO05D000504 1.8e-06 56.2 41 63.4
Sp6g14940 Schrenkiella parvula HOM05D000644 ORTHO05D000504 1.8e-06 56.2 129 38.8
TPR.G12343 Trifolium pratense HOM05D000644 ORTHO05D000504 1.8e-06 56.2 41 63.4
MSTRG.25173 Avicennia marina HOM05D000644 ORTHO05D000504 2.3e-06 55.8 47 57.4
Carub.0008s1295 Capsella rubella HOM05D000644 ORTHO05D000504 2.3e-06 55.8 98 42.9
ECA232G0030 Erigeron canadensis HOM05D000644 ORTHO05D000504 2.3e-06 55.8 126 34.9
Thhalv10013346m.g Eutrema salsugineum HOM05D000644 ORTHO05D000504 2.3e-06 55.8 98 40.8
SGA_v2.0_scaffold111G31493 Striga asiatica HOM05D000644 ORTHO05D000504 2.3e-06 55.8 53 56.6
THA.LOC104822824 Tarenaya hassleriana HOM05D000644 ORTHO05D000504 2.3e-06 55.8 48 58.3
Carub.0001s3613 Capsella rubella HOM05D000644 ORTHO05D000504 3.0e-06 55.5 48 58.3
Cfa018152 Carpinus fangiana HOM05D000644 ORTHO05D000504 3.0e-06 55.5 41 63.4
ClCG05G018980 Citrullus lanatus HOM05D000644 ORTHO05D000504 3.0e-06 55.5 33 75.8
MELO3C003833.2 Cucumis melo HOM05D000644 ORTHO05D000504 3.0e-06 55.5 33 75.8
CsaV3_3G045130 Cucumis sativus L. HOM05D000644 ORTHO05D000504 3.0e-06 55.5 33 75.8
Sed0009646 Sechium edule HOM05D000644 ORTHO05D000504 3.0e-06 55.5 33 75.8
Atru.chr13.479 Acer truncatum HOM05D000644 ORTHO05D000504 4.0e-06 55.1 62 50.0
Migut.C00731 Erythranthe guttata HOM05D000644 ORTHO05D000504 4.0e-06 55.1 62 51.6
Medtr3g111830 Medicago truncatula HOM05D000644 ORTHO05D000504 4.0e-06 55.1 41 63.4
RcHm_v2.0_Chr6g0301051 Rosa chinensis HOM05D000644 ORTHO05D000504 4.0e-06 55.1 40 65.0
THA.LOC104825115 Tarenaya hassleriana HOM05D000644 ORTHO05D000504 4.0e-06 55.1 94 42.6
TAR381G1683 Trochodendron aralioides HOM05D000644 ORTHO05D000504 4.0e-06 55.1 31 77.4
AL1G53530 Arabidopsis lyrata HOM05D000644 ORTHO05D000504 5.2e-06 54.7 40 65.0
arahy.Tifrunner.gnm1.ann1.08CHYH Arachis hypogaea HOM05D000644 ORTHO05D000504 5.2e-06 54.7 31 80.6
arahy.Tifrunner.gnm1.ann1.8X7RIN Arachis hypogaea HOM05D000644 ORTHO05D000504 5.2e-06 54.7 31 80.6
A05p21490 Brassica napus HOM05D000644 ORTHO05D000504 5.2e-06 54.7 40 65.0
BraA05t21068Z Brassica rapa HOM05D000644 ORTHO05D000504 5.2e-06 54.7 40 65.0
ECA232G4415 Erigeron canadensis HOM05D000644 ORTHO05D000504 5.2e-06 54.7 31 80.6
Thhalv10011494m.g Eutrema salsugineum HOM05D000644 ORTHO05D000504 5.2e-06 54.7 40 65.0
Gohir.A06G010200 Gossypium hirsutum HOM05D000644 ORTHO05D000504 5.2e-06 54.7 34 73.5
Gorai.010G010300 Gossypium raimondii HOM05D000644 ORTHO05D000504 5.2e-06 54.7 34 73.5
HanXRQChr09g0268911 Helianthus annuus HOM05D000644 ORTHO05D000504 5.2e-06 54.7 31 80.6
Sp1g34453 Schrenkiella parvula HOM05D000644 ORTHO05D000504 5.2e-06 54.7 40 65.0
AT1G47330 Arabidopsis thaliana HOM05D000644 ORTHO05D000504 6.7e-06 54.3 31 77.4
CSS0039719 Camellia sinensis var. sinensis HOM05D000644 ORTHO05D000504 6.7e-06 54.3 73 45.2
Ca_15517_v3 Cicer arietinum L. HOM05D000644 ORTHO05D000504 6.7e-06 54.3 31 77.4
Eucgr.F01895 Eucalyptus grandis HOM05D000644 ORTHO05D000504 6.7e-06 54.3 31 77.4
Phvul.009G057700 Phaseolus vulgaris HOM05D000644 ORTHO05D000504 6.7e-06 54.3 31 77.4
Pp3c5_12990 Physcomitrium patens HOM05D000644 ORTHO05D000504 6.7e-06 54.3 84 47.6
VMungo1309G1105 Vigna mungo HOM05D000644 ORTHO05D000504 6.7e-06 54.3 31 77.4
Nitab4.5_0006280g0050 Nicotiana tabacum HOM05D000644 ORTHO05D000504 8.8e-06 53.9 38 65.8
PSO675G7528 Papaver somniferum HOM05D000644 ORTHO05D000504 8.8e-06 53.9 53 50.9
Potri.014G196900 Populus trichocarpa HOM05D000644 ORTHO05D000504 8.8e-06 53.9 97 36.1


User provided reference genes

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