Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 2480.3 1261 100.0
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1520.8 1253 63.0
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1515.7 1270 61.5
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1513.0 1258 62.2
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1509.2 1254 61.7
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1508.8 1265 62.4
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1508.0 1261 61.4
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1506.9 1252 61.6
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1503.8 1259 61.5
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1502.6 1256 61.2
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1501.9 1255 61.7
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1498.0 1259 60.5
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1494.9 1260 60.6
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1494.6 1257 61.3
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1490.7 1262 60.3
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1489.9 1259 60.6
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1488.4 1287 60.1
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1484.5 1262 60.3
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1481.5 1255 61.4
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1477.6 1258 61.3
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1476.1 1256 60.2
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1474.5 1263 59.4
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1470.3 1258 60.4
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1469.9 1275 59.7
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1466.8 1259 60.6
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1465.7 1275 59.3
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1464.5 1258 60.3
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1464.1 1275 59.0
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1462.6 1257 60.6
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1461.8 1257 59.7
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1461.8 1252 59.6
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1461.4 1259 59.9
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1456.8 1261 60.0
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1456.4 1278 59.0
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1454.5 1260 59.1
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1451.0 1259 59.7
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1450.6 1258 59.5
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1449.9 1320 58.5
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1447.6 1272 58.6
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1437.2 1276 58.7
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1437.2 1293 58.5
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1435.2 1257 59.9
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1432.5 1260 58.5
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1432.5 1253 58.7
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1428.7 1331 56.9
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1428.3 1256 59.1
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1427.5 1253 59.0
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1426.8 1262 58.9
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1424.1 1268 57.6
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1424.1 1247 60.2
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1423.7 1252 59.1
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1418.3 1266 58.7
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1417.1 1273 58.6
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1413.7 1253 58.7
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1410.2 1298 57.2
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1409.8 1257 57.8
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1409.0 1267 59.4
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1407.1 1258 59.1
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1404.4 1259 57.7
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1402.1 1252 57.4
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1401.0 1258 58.9
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1400.6 1258 57.8
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1398.6 1256 58.2
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1397.5 1185 61.7
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1395.9 1273 57.3
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1394.4 1256 57.2
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1394.4 1278 57.5
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1392.9 1257 57.8
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1392.5 1328 55.6
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1390.6 1253 57.5
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1385.2 1250 57.8
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1384.4 1254 57.3
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1369.4 1252 57.3
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1368.6 1250 57.6
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1368.2 1316 55.3
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1365.1 1245 57.6
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1364.0 1263 57.0
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1364.0 1250 57.5
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1362.8 1278 56.7
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1357.0 1213 58.7
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1333.9 1303 55.3
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1332.8 1250 56.7
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1332.0 1266 56.1
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1329.3 1196 58.6
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1326.2 1252 56.2
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1325.1 1180 57.8
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1292.3 1254 54.5
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1290.4 1206 56.8
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1288.1 1185 57.1
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1275.4 1274 53.4
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1262.3 1166 56.5
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1248.4 1257 53.9
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1228.4 1260 52.5
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1212.6 1009 61.1
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1198.0 1022 59.9
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1119.4 968 59.7
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1092.8 1268 48.3
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 2.9e-310 1068.9 1021 55.1
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 1.8e-307 1059.7 886 61.2
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 1.1e-304 1050.4 1253 46.5
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 1.0e-278 964.1 1289 44.0
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 1.2e-276 957.2 1252 45.0
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 4.9e-265 918.7 888 55.0
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 1.7e-262 910.2 938 53.2
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.1e-261 907.5 792 58.5
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 2.4e-259 899.8 1231 43.8
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 8.7e-246 854.7 658 67.8
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 8.1e-244 848.2 815 55.7
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 7.2e-200 702.2 1306 35.7
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 8.3e-188 662.1 537 63.5
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 2.1e-183 647.5 606 56.1
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 2.0e-178 630.9 1409 32.9
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 1.2e-159 568.5 1283 31.6
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 2.1e-159 567.8 619 49.3
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.9e-156 557.4 469 62.9
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 2.9e-148 530.8 497 58.1
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 1.3e-132 478.8 641 45.1
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 7.9e-122 443.0 1159 30.4
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.1e-112 412.5 292 70.9
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.3e-108 399.1 713 39.1
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 2.8e-103 381.3 282 67.4
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.9e-89 334.3 332 53.6
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.8e-79 301.6 247 62.8
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 6.5e-76 290.4 237 65.0
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.6e-69 269.2 266 51.9
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.6e-69 269.2 266 51.9
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.9e-68 265.0 254 54.7
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.8e-62 245.7 201 62.7
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 2.5e-43 182.2 174 53.4
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 7.3e-43 180.6 179 53.6
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.1e-38 164.9 157 51.6
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 4.1e-38 164.9 161 55.3
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 7.1e-38 164.1 1203 22.2
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 2.6e-32 145.6 111 65.8
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.1e-30 140.2 104 66.3
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 6.9e-25 120.9 119 55.5
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 1.6e-21 109.8 92 57.6
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 9.6e-19 100.5 225 33.8
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 1.8e-17 96.3 157 36.3
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 5.8e-16 91.3 129 41.1
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 2.2e-15 89.4 90 50.0
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.9e-14 86.3 124 42.7
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 7.9e-13 80.9 115 35.7
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.0e-12 80.5 115 35.7
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 6.7e-12 77.8 88 40.9
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 6.7e-12 77.8 124 38.7
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.9e-11 76.3 91 46.2
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 6.9e-09 67.8 67 44.8
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 5.8e-08 64.7 241 25.3
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 7.6e-08 64.3 62 53.2
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 2.2e-07 62.8 65 52.3


User provided reference genes

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