Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 1.0e-224 783.1 400 100.0
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 6.7e-176 620.9 467 72.4
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 2.2e-174 615.9 469 71.9
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.8e-173 612.8 469 71.0
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 4.5e-172 608.2 468 70.3
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.9e-172 607.8 469 70.8
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 1.1e-170 603.6 470 71.3
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.4e-170 603.2 469 68.7
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 9.4e-170 600.5 469 69.1
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 9.4e-170 600.5 469 69.7
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.2e-169 600.1 470 69.8
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.2e-169 600.1 469 68.7
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 1.6e-169 599.7 469 69.5
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 4.6e-169 598.2 469 68.9
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 4.6e-169 598.2 470 69.4
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 6.1e-169 597.8 469 69.1
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 7.9e-169 597.4 469 68.2
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.4e-168 596.7 469 68.0
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 1.8e-168 596.3 468 68.8
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.3e-168 595.9 469 69.3
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 2.3e-168 595.9 469 69.7
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 2.3e-168 595.9 470 70.0
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 2.3e-168 595.9 469 68.7
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.0e-168 595.5 469 69.3
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 3.0e-168 595.5 468 69.9
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.9e-168 595.1 469 69.9
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 3.9e-168 595.1 469 68.9
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 5.1e-168 594.7 469 69.1
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 5.1e-168 594.7 469 69.1
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 8.8e-168 594.0 469 69.9
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 8.8e-168 594.0 469 69.1
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 8.8e-168 594.0 470 69.4
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 8.8e-168 594.0 469 68.7
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 1.5e-167 593.2 469 68.2
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 4.3e-167 591.7 470 69.6
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.7e-167 591.3 471 68.6
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.3e-166 590.1 469 68.2
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.7e-166 589.7 469 67.2
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 6.3e-166 587.8 469 69.1
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 6.3e-166 587.8 469 67.4
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 8.2e-166 587.4 469 69.1
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 1.1e-165 587.0 469 68.2
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 1.1e-165 587.0 469 68.9
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 1.1e-165 587.0 472 68.0
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 1.2e-164 583.6 469 68.7
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 3.4e-164 582.0 468 68.4
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 5.9e-164 581.3 470 67.2
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 1.0e-163 580.5 470 67.2
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 1.7e-163 579.7 469 67.0
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 2.9e-163 578.9 470 67.2
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 5.0e-163 578.2 506 64.2
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 5.0e-163 578.2 493 65.1
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 8.5e-163 577.4 469 67.8
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 8.5e-163 577.4 469 67.6
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 8.5e-163 577.4 506 64.0
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.9e-162 576.2 469 67.4
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 7.2e-162 574.3 469 66.5
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 1.2e-161 573.5 468 67.7
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.6e-161 573.2 469 67.2
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.1e-161 572.8 469 66.3
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.1e-161 572.8 469 67.0
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 2.7e-161 572.4 463 68.0
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 3.6e-161 572.0 469 67.4
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 4.7e-161 571.6 469 66.1
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 6.1e-161 571.2 469 66.5
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 7.9e-161 570.9 469 66.3
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 1.0e-160 570.5 469 67.2
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.4e-160 570.1 469 66.7
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.8e-160 569.7 470 65.7
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.8e-160 569.7 470 65.7
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.8e-160 569.7 469 66.3
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 3.9e-160 568.5 469 66.3
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 3.9e-160 568.5 469 66.3
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 6.7e-160 567.8 469 66.3
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 2.0e-159 566.2 469 67.8
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 2.0e-159 566.2 469 66.1
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 9.7e-159 563.9 469 65.9
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 9.7e-159 563.9 471 65.4
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 8.2e-158 560.8 493 62.7
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.2e-156 557.0 497 62.4
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 7.7e-156 554.3 545 59.1
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.3e-155 553.5 449 67.3
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.9e-154 549.7 469 65.9
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 3.6e-153 545.4 471 65.4
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.6e-151 539.3 469 64.4
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.3e-150 537.0 441 65.8
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.0e-147 527.3 491 62.1
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 5.0e-147 525.0 470 63.8
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 9.8e-143 510.8 406 69.5
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 1.2e-140 503.8 418 66.7
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 9.4e-138 494.2 468 58.8
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 6.1e-137 491.5 418 64.8
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 6.1e-137 491.5 418 64.8
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 3.4e-135 485.7 397 67.0
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 5.7e-135 485.0 461 56.6
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 3.1e-133 479.2 461 59.7
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 3.5e-132 475.7 470 59.4
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.1e-125 454.1 423 60.8
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.9e-124 448.4 469 57.1
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 5.0e-123 445.3 383 64.8
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 1.5e-122 443.7 471 53.1
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 3.7e-110 402.5 349 63.6
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 8.3e-110 401.4 365 61.9
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 7.1e-109 398.3 373 59.5
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 2.8e-105 386.3 340 64.4
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.4e-101 374.0 365 60.5
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 4.9e-94 349.0 324 63.9
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 1.9e-93 347.1 209 81.3
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 6.0e-92 342.0 209 80.9
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 6.2e-89 332.0 289 64.7
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.1e-82 311.2 182 81.9
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 6.9e-80 302.0 173 85.0
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 3.4e-79 299.7 222 71.2
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 7.4e-74 282.0 209 62.7
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.3e-73 281.2 282 59.9
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 1.5e-66 257.7 158 84.2
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.5e-66 256.9 162 83.3
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.8e-64 250.8 338 47.6
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 7.4e-58 228.8 140 84.3
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 6.9e-56 222.2 493 32.7
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 1.8e-51 207.6 119 89.1
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.2e-45 186.8 111 87.4
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 7.2e-45 185.7 299 42.1
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 2.1e-44 184.1 107 80.4
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.6e-42 177.2 105 81.9
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.2e-36 158.3 91 86.8
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.3e-35 154.1 161 55.9
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 6.7e-35 152.5 489 28.8
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 1.5e-34 151.4 331 33.8
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.2e-31 141.7 312 37.2
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.0e-30 138.7 76 90.8
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.0e-27 127.1 72 81.9
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 8.8e-27 125.6 72 80.6
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.0e-26 124.4 72 79.2
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 4.4e-26 123.2 67 94.0
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.3e-25 121.7 74 79.7
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.3e-25 121.7 69 88.4
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 7.0e-24 115.9 180 42.2
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 3.5e-23 113.6 71 77.5
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.5e-18 98.2 57 80.7
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 5.4e-16 89.7 70 68.6
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 6.6e-14 82.8 48 87.5
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 7.3e-13 79.3 52 80.8
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.2e-12 78.6 46 89.1
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 5.7e-10 69.7 47 76.6
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.0e-07 61.2 49 65.3
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 1.0e-06 58.9 33 87.9


User provided reference genes

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