Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014369 Vanilla planifolia HOM05D000211 ORTHO05D002682 1.5e-246 855.9 474 100.0
MD11G1001700 Malus domestica HOM05D000211 ORTHO05D002682 3.8e-109 399.4 496 49.4
PSO339G3993 Papaver somniferum HOM05D000211 ORTHO05D002682 5.4e-108 395.6 494 49.0
Os01g0276800 Oryza sativa ssp. japonica HOM05D000211 ORTHO05D002682 1.3e-106 391.0 508 50.8
GSVIVG01025503001 Vitis vinifera HOM05D000211 ORTHO05D002682 1.3e-106 391.0 507 46.5
Ah.16g102820 Amaranthus hybridus HOM05D000211 ORTHO05D002682 7.3e-105 385.2 492 49.0
Cfa009535 Carpinus fangiana HOM05D000211 ORTHO05D002682 1.2e-104 384.4 499 47.5
FAN16G2463 Fragaria x ananassa HOM05D000211 ORTHO05D002682 1.6e-104 384.0 502 45.6
FAN11G1410 Fragaria x ananassa HOM05D000211 ORTHO05D002682 2.1e-104 383.6 502 45.8
COL.COLO4_35073 Corchorus olitorius HOM05D000211 ORTHO05D002682 3.6e-104 382.9 481 49.7
RcHm_v2.0_Chr5g0084021 Rosa chinensis HOM05D000211 ORTHO05D002682 1.1e-103 381.3 511 47.6
QL01p007953 Quercus lobata HOM05D000211 ORTHO05D002682 1.8e-103 380.6 496 47.6
MD03G1001800 Malus domestica HOM05D000211 ORTHO05D002682 2.4e-103 380.2 500 47.0
FvH4_3g45911 Fragaria vesca HOM05D000211 ORTHO05D002682 6.9e-103 378.6 502 46.0
Peaxi162Scf00745g00321 Petunia axillaris HOM05D000211 ORTHO05D002682 6.9e-103 378.6 479 48.0
Manes.17G052400 Manihot esculenta HOM05D000211 ORTHO05D002682 9.0e-103 378.3 522 46.9
Sabra03G0165900 Salix brachista HOM05D000211 ORTHO05D002682 1.5e-102 377.5 500 48.8
CiPaw.13G179000 Carya illinoinensis HOM05D000211 ORTHO05D002682 7.6e-102 375.2 491 47.3
Duzib150G0667 Durio zibethinus HOM05D000211 ORTHO05D002682 1.7e-101 374.0 531 47.3
SalBow3G3948 Salvia bowleyana HOM05D000211 ORTHO05D002682 2.2e-101 373.6 496 50.4
CANSAT11G1344 Cannabis sativa HOM05D000211 ORTHO05D002682 2.9e-101 373.2 515 46.8
Hund16025 Selenicereus undatus HOM05D000211 ORTHO05D002682 2.9e-101 373.2 476 49.2
Thecc.09G197900 Theobroma cacao HOM05D000211 ORTHO05D002682 3.8e-101 372.9 514 47.7
AUR62012168 Chenopodium quinoa HOM05D000211 ORTHO05D002682 6.4e-101 372.1 506 46.4
Lj4g0015151 Lotus japonicus HOM05D000211 ORTHO05D002682 6.4e-101 372.1 507 49.5
CDE04G2707 Ceratophyllum demersum HOM05D000211 ORTHO05D002682 8.4e-101 371.7 489 48.3
AUR62022805 Chenopodium quinoa HOM05D000211 ORTHO05D002682 8.4e-101 371.7 493 49.5
Gorai.004G020200 Gossypium raimondii HOM05D000211 ORTHO05D002682 8.4e-101 371.7 510 48.0
MBI13_g37424_MAGBIO Magnolia biondii HOM05D000211 ORTHO05D002682 1.1e-100 371.3 527 49.7
TWI34G0611 Tripterygium wilfordii HOM05D000211 ORTHO05D002682 1.1e-100 371.3 477 48.8
Zm00001eb332690 Zea mays HOM05D000211 ORTHO05D002682 1.1e-100 371.3 494 51.4
Gohir.D08G024800 Gossypium hirsutum HOM05D000211 ORTHO05D002682 1.4e-100 370.9 510 48.0
Gohir.A08G014300 Gossypium hirsutum HOM05D000211 ORTHO05D002682 4.2e-100 369.4 509 47.5
PSO384G4567 Papaver somniferum HOM05D000211 ORTHO05D002682 5.4e-100 369.0 495 49.3
Potri.003G223000 Populus trichocarpa HOM05D000211 ORTHO05D002682 9.3e-100 368.2 496 50.6
Sopen12g034320 Solanum pennellii HOM05D000211 ORTHO05D002682 5.1e-98 362.5 501 47.9
Atru.chr3.2061 Acer truncatum HOM05D000211 ORTHO05D002682 1.1e-97 361.3 525 47.2
Dinv13488 Davidia involucrata HOM05D000211 ORTHO05D002682 1.5e-97 360.9 491 47.0
Aqoxy6G00336 Aquilegia oxysepala HOM05D000211 ORTHO05D002682 3.3e-97 359.8 508 48.2
FAN25G3011 Fragaria x ananassa HOM05D000211 ORTHO05D002682 3.3e-97 359.8 481 46.6
Gorai.013G245500 Gossypium raimondii HOM05D000211 ORTHO05D002682 3.3e-97 359.8 483 48.7
PGSC0003DMG400004640 Solanum tuberosum HOM05D000211 ORTHO05D002682 1.3e-96 357.8 505 46.5
Gohir.D13G215200 Gossypium hirsutum HOM05D000211 ORTHO05D002682 1.6e-96 357.5 485 44.1
Nn3g18641 Nelumbo nucifera HOM05D000211 ORTHO05D002682 1.6e-96 357.5 483 51.3
Eucgr.B03587 Eucalyptus grandis HOM05D000211 ORTHO05D002682 4.8e-96 355.9 511 43.1
Lalb_Chr16g0385411 Lupinus albus HOM05D000211 ORTHO05D002682 1.1e-95 354.8 506 46.8
TWI60G0518 Tripterygium wilfordii HOM05D000211 ORTHO05D002682 1.4e-95 354.4 514 48.2
Solyc12g099660.2 Solanum lycopersicum HOM05D000211 ORTHO05D002682 2.4e-95 353.6 504 46.6
Dinv03796 Davidia involucrata HOM05D000211 ORTHO05D002682 4.0e-95 352.8 499 47.7
CsaV3_4G017580 Cucumis sativus L. HOM05D000211 ORTHO05D002682 2.0e-94 350.5 505 44.4
Oeu023969.1 Olea europaea HOM05D000211 ORTHO05D002682 2.0e-94 350.5 465 50.8
Cc01_g00300 Coffea canephora HOM05D000211 ORTHO05D002682 3.8e-93 346.3 517 47.0
ClCG02G024450 Citrullus lanatus HOM05D000211 ORTHO05D002682 6.4e-93 345.5 354 52.0
Haze_22924 Corylus avellana HOM05D000211 ORTHO05D002682 6.4e-93 345.5 585 42.7
MELO3C014731.2 Cucumis melo HOM05D000211 ORTHO05D002682 1.4e-92 344.4 514 46.5
Nn4g24948 Nelumbo nucifera HOM05D000211 ORTHO05D002682 1.4e-92 344.4 306 58.8
TPR.G34020 Trifolium pratense HOM05D000211 ORTHO05D002682 1.4e-92 344.4 304 59.2
MBI19_g09314_MAGBIO Magnolia biondii HOM05D000211 ORTHO05D002682 3.2e-92 343.2 477 47.0
Manes.16G035100 Manihot esculenta HOM05D000211 ORTHO05D002682 7.1e-92 342.0 529 43.7
Oeu060906.1 Olea europaea HOM05D000211 ORTHO05D002682 9.3e-92 341.7 496 47.2
MSTRG.12804 Avicennia marina HOM05D000211 ORTHO05D002682 1.2e-91 341.3 481 49.3
Ciclev10014526m.g Citrus clementina HOM05D000211 ORTHO05D002682 1.6e-91 340.9 533 46.7
Gohir.A13G211300 Gossypium hirsutum HOM05D000211 ORTHO05D002682 2.7e-91 340.1 480 45.8
Psat7g133280 Pisum sativum HOM05D000211 ORTHO05D002682 4.6e-91 339.3 505 46.3
TAR633G1501 Trochodendron aralioides HOM05D000211 ORTHO05D002682 1.0e-90 338.2 461 51.2
Sc06g0004170 Simmondsia chinensis HOM05D000211 ORTHO05D002682 1.3e-90 337.8 494 46.2
vmacro04275 Vaccinium macrocarpon HOM05D000211 ORTHO05D002682 1.8e-90 337.4 563 42.3
PGR119G2498 Punica granatum HOM05D000211 ORTHO05D002682 2.3e-90 337.0 511 44.6
Sp6g18190 Schrenkiella parvula HOM05D000211 ORTHO05D002682 2.3e-90 337.0 528 40.5
arahy.Tifrunner.gnm1.ann1.NBIC4D Arachis hypogaea HOM05D000211 ORTHO05D002682 6.7e-90 335.5 355 52.7
C09p47860 Brassica napus HOM05D000211 ORTHO05D002682 6.7e-90 335.5 523 43.6
arahy.Tifrunner.gnm1.ann1.GBZS02 Arachis hypogaea HOM05D000211 ORTHO05D002682 8.7e-90 335.1 376 51.1
Glyma.07G224600 Glycine max HOM05D000211 ORTHO05D002682 5.6e-89 332.4 398 49.2
Thhalv10012928m.g Eutrema salsugineum HOM05D000211 ORTHO05D002682 9.6e-89 331.6 521 42.8
Prupe.6G001700 Prunus persica HOM05D000211 ORTHO05D002682 1.6e-88 330.9 501 43.3
BolC9t57624H Brassica oleracea HOM05D000211 ORTHO05D002682 2.1e-88 330.5 526 43.3
CAN.G484.26 Capsicum annuum HOM05D000211 ORTHO05D002682 2.8e-88 330.1 502 44.6
PGR102G3379 Punica granatum HOM05D000211 ORTHO05D002682 3.7e-88 329.7 522 46.2
THA.LOC104811714 Tarenaya hassleriana HOM05D000211 ORTHO05D002682 3.7e-88 329.7 514 44.9
BraA03t10657Z Brassica rapa HOM05D000211 ORTHO05D002682 8.1e-88 328.6 528 43.2
HanXRQChr07g0186541 Helianthus annuus HOM05D000211 ORTHO05D002682 1.8e-87 327.4 472 42.6
Nitab4.5_0004741g0050 Nicotiana tabacum HOM05D000211 ORTHO05D002682 1.8e-87 327.4 501 43.5
Aa31LG3G12270 Aethionema arabicum HOM05D000211 ORTHO05D002682 2.4e-87 327.0 497 45.5
Glyma.20G024500 Glycine max HOM05D000211 ORTHO05D002682 5.3e-87 325.9 402 48.8
BcaB01g04396 Brassica carinata HOM05D000211 ORTHO05D002682 1.2e-86 324.7 518 42.7
Phvul.002G101100 Phaseolus vulgaris HOM05D000211 ORTHO05D002682 1.2e-86 324.7 402 47.5
unitig_52.g17523 Utricularia gibba HOM05D000211 ORTHO05D002682 3.4e-86 323.2 552 39.5
Medtr4g083360 Medicago truncatula HOM05D000211 ORTHO05D002682 7.6e-86 322.0 406 49.3
C03p15800 Brassica napus HOM05D000211 ORTHO05D002682 9.9e-86 321.6 520 41.2
BolC3t14011H Brassica oleracea HOM05D000211 ORTHO05D002682 9.9e-86 321.6 520 41.2
Nitab4.5_0004438g0080 Nicotiana tabacum HOM05D000211 ORTHO05D002682 2.2e-85 320.5 475 44.8
ECA238G0311 Erigeron canadensis HOM05D000211 ORTHO05D002682 3.8e-85 319.7 523 43.0
SGA_v2.0_scaffold6G03328 Striga asiatica HOM05D000211 ORTHO05D002682 3.8e-85 319.7 491 44.6
Peaxi162Scf00086g00328 Petunia axillaris HOM05D000211 ORTHO05D002682 6.4e-85 318.9 507 43.2
BcaC01g06420 Brassica carinata HOM05D000211 ORTHO05D002682 8.4e-85 318.5 526 44.3
Zm00001eb128910 Zea mays HOM05D000211 ORTHO05D002682 7.1e-84 315.5 299 59.9
A03p13510 Brassica napus HOM05D000211 ORTHO05D002682 1.2e-83 314.7 528 44.9
AL8G32010 Arabidopsis lyrata HOM05D000211 ORTHO05D002682 1.6e-83 314.3 529 41.2
AT5G56360 Arabidopsis thaliana HOM05D000211 ORTHO05D002682 3.5e-83 313.2 517 42.2
Nitab4.5_0000570g0080 Nicotiana tabacum HOM05D000211 ORTHO05D002682 3.5e-83 313.2 509 45.0
BraA10t43467Z Brassica rapa HOM05D000211 ORTHO05D002682 6.0e-83 312.4 524 44.3
Sed0010489 Sechium edule HOM05D000211 ORTHO05D002682 6.0e-83 312.4 523 43.4
Carub.0008s1671 Capsella rubella HOM05D000211 ORTHO05D002682 1.0e-82 311.6 513 41.3
FAN21G3711 Fragaria x ananassa HOM05D000211 ORTHO05D002682 3.9e-82 309.7 502 41.0
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 5.1e-82 309.3 486 45.1
unitig_62.g23534 Utricularia gibba HOM05D000211 ORTHO05D002682 6.7e-82 308.9 499 41.5
Lalb_Chr05g0219841 Lupinus albus HOM05D000211 ORTHO05D002682 2.5e-81 307.0 507 44.6
A10p13680 Brassica napus HOM05D000211 ORTHO05D002682 3.3e-81 306.6 524 44.1
DCAR_023822 Daucus carota HOM05D000211 ORTHO05D002682 4.3e-81 306.2 495 43.8
SGA_v2.0_scaffold3G01698 Striga asiatica HOM05D000211 ORTHO05D002682 1.6e-80 304.3 504 43.3
CARHR269800 Cardamine hirsuta HOM05D000211 ORTHO05D002682 4.8e-80 302.8 518 40.5
HanXRQChr14g0437141 Helianthus annuus HOM05D000211 ORTHO05D002682 8.2e-80 302.0 493 41.8
Thecc.05G254600 Theobroma cacao HOM05D000211 ORTHO05D002682 1.4e-79 301.2 484 39.9
Migut.N00534 Erythranthe guttata HOM05D000211 ORTHO05D002682 2.4e-79 300.4 488 45.5
Duzib106G1428 Durio zibethinus HOM05D000211 ORTHO05D002682 2.0e-78 297.4 501 40.1
COL.COLO4_36028 Corchorus olitorius HOM05D000211 ORTHO05D002682 4.5e-78 296.2 475 39.8
Eucgr.J01751 Eucalyptus grandis HOM05D000211 ORTHO05D002682 1.7e-77 294.3 487 41.7
THA.LOC104813476 Tarenaya hassleriana HOM05D000211 ORTHO05D002682 3.8e-77 293.1 514 39.7
Sabra13G0053500 Salix brachista HOM05D000211 ORTHO05D002682 1.8e-74 284.3 287 52.6
Gohir.A13G101215 Gossypium hirsutum HOM05D000211 ORTHO05D002682 2.3e-74 283.9 328 47.6
CSS0039902 Camellia sinensis var. sinensis HOM05D000211 ORTHO05D002682 1.6e-72 277.7 477 46.3
BcaC04g20099 Brassica carinata HOM05D000211 ORTHO05D002682 1.7e-69 267.7 392 42.6
Lsat_1_v5_gn_6_56060 Lactuca sativa HOM05D000211 ORTHO05D002682 6.5e-69 265.8 434 42.9
Rhsim13G0234500 Rhododendron simsii HOM05D000211 ORTHO05D002682 1.9e-68 264.2 575 38.4
CDE02G3536 Ceratophyllum demersum HOM05D000211 ORTHO05D002682 6.1e-67 259.2 307 45.9
ECA233G3904 Erigeron canadensis HOM05D000211 ORTHO05D002682 7.9e-67 258.8 466 42.1
Potri.013G060332 Populus trichocarpa HOM05D000211 ORTHO05D002682 1.1e-65 255.0 188 64.4
TAR636G1134 Trochodendron aralioides HOM05D000211 ORTHO05D002682 3.3e-65 253.4 440 43.4
Ca_18790_v3 Cicer arietinum L. HOM05D000211 ORTHO05D002682 4.5e-62 243.0 481 40.1
Lsat_1_v5_gn_2_50861 Lactuca sativa HOM05D000211 ORTHO05D002682 1.7e-61 241.1 434 40.3
Nitab4.5_0002741g0040 Nicotiana tabacum HOM05D000211 ORTHO05D002682 1.4e-58 231.5 481 38.9
SEGI_17374 Sequoiadendron giganteum HOM05D000211 ORTHO05D002682 3.0e-58 230.3 317 47.3
Mapoly0057s0106 Marchantia polymorpha HOM05D000211 ORTHO05D002682 7.4e-57 225.7 470 38.7
Pp3c22_18260 Physcomitrium patens HOM05D000211 ORTHO05D002682 7.4e-57 225.7 487 32.9
Peaxi162Scf00004g02724 Petunia axillaris HOM05D000211 ORTHO05D002682 4.5e-54 216.5 483 37.3
AagrBONN_evm.TU.Sc2ySwM_344.2520 Anthoceros agrestis HOM05D000211 ORTHO05D002682 5.2e-50 203.0 501 34.1
SMO133G0027 Selaginella moellendorffii HOM05D000211 ORTHO05D002682 4.4e-49 199.9 157 56.1
Cpa.g.sc119.26 Carica papaya HOM05D000211 ORTHO05D002682 9.7e-49 198.7 478 34.9
Gohir.D13G104718 Gossypium hirsutum HOM05D000211 ORTHO05D002682 3.3e-41 173.7 377 35.3
Gorai.013G117500 Gossypium raimondii HOM05D000211 ORTHO05D002682 4.4e-41 173.3 381 35.4
Potri.001G001700 Populus trichocarpa HOM05D000211 ORTHO05D002682 9.7e-41 172.2 408 39.7
Lj6A294G9 Lonicera japonica HOM05D000211 ORTHO05D002682 1.8e-34 151.4 192 47.9
Lsat_1_v5_gn_4_29281 Lactuca sativa HOM05D000211 ORTHO05D002682 1.8e-26 124.8 73 74.0
Cre17.g725350 Chlamydomonas reinhardtii HOM05D000211 ORTHO05D002682 1.3e-21 108.6 132 37.1
MCO06G050 Micromonas commoda HOM05D000211 ORTHO05D002682 2.9e-21 107.5 156 36.5
CBR_g20370 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-19 100.1 571 29.1
Hund13814 Selenicereus undatus HOM05D000211 ORTHO05D002682 4.4e-17 93.6 251 30.7
Cfa026088 Carpinus fangiana HOM05D000211 ORTHO05D002682 1.0e-13 82.4 190 28.9
PRCOL_00001420 Prasinoderma coloniale HOM05D000211 ORTHO05D002682 3.0e-13 80.9 390 26.4
SMO081G0002 Selaginella moellendorffii HOM05D000211 ORTHO05D002682 5.0e-13 80.1 70 51.4
PRCOL_00005414 Prasinoderma coloniale HOM05D000211 ORTHO05D002682 1.5e-12 78.6 134 34.3
EL10Ac2g04664 Beta vulgaris HOM05D000211 ORTHO05D002682 7.3e-12 76.3 246 34.1
Lsat_1_v5_gn_4_87481 Lactuca sativa HOM05D000211 ORTHO05D002682 3.7e-08 63.9 69 49.3
CDE02G4587 Ceratophyllum demersum HOM05D000211 ORTHO05D002682 5.4e-07 60.1 62 53.2


User provided reference genes

Program Settings