Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014331 Vanilla planifolia HOM05D000258 ORTHO05D430429 2.3e-139 498.8 239 100.0
HPP92_014339 Vanilla planifolia HOM05D000258 ORTHO05D000153 2.8e-20 103.2 84 66.7
ECA238G1654 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.5e-09 65.1 107 40.2
TPR.G28809 Trifolium pratense HOM05D000258 ORTHO05D000153 1.9e-08 63.9 90 42.2
COL.COLO4_11710 Corchorus olitorius HOM05D000258 ORTHO05D000153 3.2e-08 63.2 90 38.9
CDE04G2783 Ceratophyllum demersum HOM05D000258 ORTHO05D000153 7.2e-08 62.0 90 41.1
Sc16g0000690 Simmondsia chinensis HOM05D000258 ORTHO05D000153 1.2e-07 61.2 83 41.0
Sc16g0001050 Simmondsia chinensis HOM05D000258 ORTHO05D000153 1.2e-07 61.2 83 41.0
Manes.12G124000 Manihot esculenta HOM05D000258 ORTHO05D000153 2.1e-07 60.5 81 44.4
Aqoxy2G03241 Aquilegia oxysepala HOM05D000258 ORTHO05D000153 2.7e-07 60.1 81 42.0
ECA238G4328 Erigeron canadensis HOM05D000258 ORTHO05D000153 2.7e-07 60.1 90 41.1
Manes.13G102500 Manihot esculenta HOM05D000258 ORTHO05D000153 2.7e-07 60.1 74 45.9
Medtr5g031300 Medicago truncatula HOM05D000258 ORTHO05D000153 2.7e-07 60.1 81 39.5
COL.COLO4_11707 Corchorus olitorius HOM05D000258 ORTHO05D000153 3.6e-07 59.7 76 44.7
Lj2A524G60 Lonicera japonica HOM05D000258 ORTHO05D000153 3.6e-07 59.7 81 38.3
Lju188A10T82 Lonicera japonica HOM05D000258 ORTHO05D000153 3.6e-07 59.7 86 40.7
HanXRQChr07g0188901 Helianthus annuus HOM05D000258 ORTHO05D000153 4.6e-07 59.3 88 42.0
Lj2A524T59 Lonicera japonica HOM05D000258 ORTHO05D000153 4.6e-07 59.3 81 38.3
Lj2C521T7 Lonicera japonica HOM05D000258 ORTHO05D000153 4.6e-07 59.3 83 44.6
Lj2C523T7 Lonicera japonica HOM05D000258 ORTHO05D000153 4.6e-07 59.3 83 44.6
CiPaw.08G143000 Carya illinoinensis HOM05D000258 ORTHO05D000153 6.1e-07 58.9 81 40.7
CiPaw.08G143300 Carya illinoinensis HOM05D000258 ORTHO05D000153 6.1e-07 58.9 81 40.7
HanXRQChr14g0444451 Helianthus annuus HOM05D000258 ORTHO05D000153 6.1e-07 58.9 92 42.4
RcHm_v2.0_Chr5g0039381 Rosa chinensis HOM05D000258 ORTHO05D000153 6.1e-07 58.9 81 42.0
CSS0031337 Camellia sinensis var. sinensis HOM05D000258 ORTHO05D000153 7.9e-07 58.5 81 40.7
Medtr5g031360 Medicago truncatula HOM05D000258 ORTHO05D000153 7.9e-07 58.5 92 39.1
SHI04631 Sapria himalayana HOM05D000258 ORTHO05D000153 7.9e-07 58.5 42 61.9
SGA_v2.0_scaffold145G36089 Striga asiatica HOM05D000258 ORTHO05D000153 7.9e-07 58.5 81 43.2
CDE02G0374 Ceratophyllum demersum HOM05D000258 ORTHO05D000153 1.0e-06 58.2 90 38.9
Cc07_g13750 Coffea canephora HOM05D000258 ORTHO05D000153 1.0e-06 58.2 81 42.0
FAN28G1905 Fragaria x ananassa HOM05D000258 ORTHO05D000153 1.0e-06 58.2 81 42.0
FAN28G2729 Fragaria x ananassa HOM05D000258 ORTHO05D000153 1.0e-06 58.2 81 42.0
Manes.13G102400 Manihot esculenta HOM05D000258 ORTHO05D000153 1.0e-06 58.2 74 44.6
Medtr5g031305 Medicago truncatula HOM05D000258 ORTHO05D000153 1.0e-06 58.2 81 40.7
Sabra06G0153000 Salix brachista HOM05D000258 ORTHO05D000153 1.0e-06 58.2 81 40.7
CiPaw.08G143200 Carya illinoinensis HOM05D000258 ORTHO05D000153 1.4e-06 57.8 83 41.0
CiPaw.08G143500 Carya illinoinensis HOM05D000258 ORTHO05D000153 1.4e-06 57.8 83 41.0
Ca_25216_v3 Cicer arietinum L. HOM05D000258 ORTHO05D000153 1.4e-06 57.8 81 40.7
ECA238G1663 Erigeron canadensis HOM05D000258 ORTHO05D000153 1.4e-06 57.8 88 40.9
Medtr5g031310 Medicago truncatula HOM05D000258 ORTHO05D000153 1.4e-06 57.8 81 40.7
vmacro03450 Vaccinium macrocarpon HOM05D000258 ORTHO05D000153 1.4e-06 57.8 90 40.0
AT4G37970 Arabidopsis thaliana HOM05D000258 ORTHO05D000153 1.8e-06 57.4 83 39.8
CiPaw.07G044100 Carya illinoinensis HOM05D000258 ORTHO05D000153 1.8e-06 57.4 83 42.2
ECA238G0926 Erigeron canadensis HOM05D000258 ORTHO05D000153 1.8e-06 57.4 92 41.3
Hma1.2p1_0675F.1_g201840 Hydrangea macrophylla HOM05D000258 ORTHO05D000153 1.8e-06 57.4 81 40.7
Hma1.2p1_0675F.1_g201870 Hydrangea macrophylla HOM05D000258 ORTHO05D000153 1.8e-06 57.4 92 38.0
QL06p036580 Quercus lobata HOM05D000258 ORTHO05D000153 1.8e-06 57.4 81 40.7
Aqoxy6G00667 Aquilegia oxysepala HOM05D000258 ORTHO05D000153 2.3e-06 57.0 81 38.3
CANSAT01G1832 Cannabis sativa HOM05D000258 ORTHO05D000153 2.3e-06 57.0 76 44.7
Cfa017555 Carpinus fangiana HOM05D000258 ORTHO05D000153 2.3e-06 57.0 74 44.6
Ca_25215_v3 Cicer arietinum L. HOM05D000258 ORTHO05D000153 2.3e-06 57.0 76 47.4
Ciclev10025933m.g Citrus clementina HOM05D000258 ORTHO05D000153 2.3e-06 57.0 81 39.5
Eucgr.I00572 Eucalyptus grandis HOM05D000258 ORTHO05D000153 2.3e-06 57.0 74 41.9
FvH4_1g19210 Fragaria vesca HOM05D000258 ORTHO05D000153 2.3e-06 57.0 83 41.0
FAN19G0084 Fragaria x ananassa HOM05D000258 ORTHO05D000153 2.3e-06 57.0 83 41.0
Hma1.2p1_0080F.1_g041980 Hydrangea macrophylla HOM05D000258 ORTHO05D000153 2.3e-06 57.0 75 45.3
Hma1.2p1_0964F.1_g242000 Hydrangea macrophylla HOM05D000258 ORTHO05D000153 2.3e-06 57.0 81 39.5
Lj2A524T58 Lonicera japonica HOM05D000258 ORTHO05D000153 2.3e-06 57.0 81 37.0
RcHm_v2.0_Chr2g0110621 Rosa chinensis HOM05D000258 ORTHO05D000153 2.3e-06 57.0 87 40.2
arahy.Tifrunner.gnm1.ann1.NW7YUK Arachis hypogaea HOM05D000258 ORTHO05D000153 3.0e-06 56.6 76 46.1
arahy.Tifrunner.gnm1.ann1.RVS99V Arachis hypogaea HOM05D000258 ORTHO05D000153 3.0e-06 56.6 76 46.1
BcaNung05368 Brassica carinata HOM05D000258 ORTHO05D000153 3.0e-06 56.6 83 42.2
ECA238G3186 Erigeron canadensis HOM05D000258 ORTHO05D000153 3.0e-06 56.6 90 41.1
Eucgr.I00573 Eucalyptus grandis HOM05D000258 ORTHO05D000153 3.0e-06 56.6 81 40.7
HanXRQChr04g0126641 Helianthus annuus HOM05D000258 ORTHO05D000153 3.0e-06 56.6 92 41.3
HanXRQChr14g0444401 Helianthus annuus HOM05D000258 ORTHO05D000153 3.0e-06 56.6 92 41.3
RcHm_v2.0_Chr1g0314861 Rosa chinensis HOM05D000258 ORTHO05D000153 3.0e-06 56.6 81 39.5
RcHm_v2.0_Chr6g0270331 Rosa chinensis HOM05D000258 ORTHO05D000153 3.0e-06 56.6 90 38.9
PGSC0003DMG400016115 Solanum tuberosum HOM05D000258 ORTHO05D000153 3.0e-06 56.6 74 43.2
arahy.Tifrunner.gnm1.ann1.1ITS02 Arachis hypogaea HOM05D000258 ORTHO05D000153 3.9e-06 56.2 74 45.9
arahy.Tifrunner.gnm1.ann1.DA0NUJ Arachis hypogaea HOM05D000258 ORTHO05D000153 3.9e-06 56.2 74 45.9
Cpa.g.sc129.3 Carica papaya HOM05D000258 ORTHO05D000153 3.9e-06 56.2 74 43.2
CiPaw.08G143100 Carya illinoinensis HOM05D000258 ORTHO05D000153 3.9e-06 56.2 83 39.8
CiPaw.08G143600 Carya illinoinensis HOM05D000258 ORTHO05D000153 3.9e-06 56.2 83 39.8
Thhalv10025540m.g Eutrema salsugineum HOM05D000258 ORTHO05D000153 3.9e-06 56.2 83 38.6
Lsat_1_v5_gn_4_34741 Lactuca sativa HOM05D000258 ORTHO05D000153 3.9e-06 56.2 81 40.7
Lalb_Chr09g0325881 Lupinus albus HOM05D000258 ORTHO05D000153 3.9e-06 56.2 81 40.7
Medtr5g031290 Medicago truncatula HOM05D000258 ORTHO05D000153 3.9e-06 56.2 100 34.0
Medtr5g031390 Medicago truncatula HOM05D000258 ORTHO05D000153 3.9e-06 56.2 81 42.0
Potri.006G199100 Populus trichocarpa HOM05D000258 ORTHO05D000153 3.9e-06 56.2 74 44.6
QL06p036440 Quercus lobata HOM05D000258 ORTHO05D000153 3.9e-06 56.2 81 39.5
QL06p036809 Quercus lobata HOM05D000258 ORTHO05D000153 3.9e-06 56.2 74 44.6
SalBow7G3332 Salvia bowleyana HOM05D000258 ORTHO05D000153 3.9e-06 56.2 83 43.4
Sp7g35610 Schrenkiella parvula HOM05D000258 ORTHO05D000153 3.9e-06 56.2 83 41.0
AL7G12680 Arabidopsis lyrata HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 38.6
arahy.Tifrunner.gnm1.ann1.0QE1FA Arachis hypogaea HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 41.0
arahy.Tifrunner.gnm1.ann1.RKT5P3 Arachis hypogaea HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 41.0
CDE02G0568 Ceratophyllum demersum HOM05D000258 ORTHO05D000153 5.1e-06 55.8 74 47.3
Cc07_g13660 Coffea canephora HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 41.0
Glyma.09G201200 Glycine max HOM05D000258 ORTHO05D000153 5.1e-06 55.8 81 40.7
Gohir.D11G297200 Gossypium hirsutum HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 39.8
Gorai.007G321900 Gossypium raimondii HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 39.8
HanXRQChr14g0444411 Helianthus annuus HOM05D000258 ORTHO05D000153 5.1e-06 55.8 76 44.7
Hma1.2p1_0668F.1_g199970 Hydrangea macrophylla HOM05D000258 ORTHO05D000153 5.1e-06 55.8 75 45.3
Lsat_1_v5_gn_2_69560 Lactuca sativa HOM05D000258 ORTHO05D000153 5.1e-06 55.8 86 40.7
Lju188A10T80 Lonicera japonica HOM05D000258 ORTHO05D000153 5.1e-06 55.8 90 33.3
Medtr4g115300 Medicago truncatula HOM05D000258 ORTHO05D000153 5.1e-06 55.8 86 37.2
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 5.1e-06 55.8 81 40.7
Psat2g091520 Pisum sativum HOM05D000258 ORTHO05D000153 5.1e-06 55.8 74 44.6
QL06p036534 Quercus lobata HOM05D000258 ORTHO05D000153 5.1e-06 55.8 81 43.2
QL11p054451 Quercus lobata HOM05D000258 ORTHO05D000153 5.1e-06 55.8 81 42.0
QL11p054618 Quercus lobata HOM05D000258 ORTHO05D000153 5.1e-06 55.8 81 42.0
RcHm_v2.0_Chr1g0345621 Rosa chinensis HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 39.8
RcHm_v2.0_Chr1g0345751 Rosa chinensis HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 39.8
RcHm_v2.0_Chr1g0345861 Rosa chinensis HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 39.8
RcHm_v2.0_Chr1g0345871 Rosa chinensis HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 39.8
RcHm_v2.0_Chr1g0345891 Rosa chinensis HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 39.8
RcHm_v2.0_Chr2g0094851 Rosa chinensis HOM05D000258 ORTHO05D000153 5.1e-06 55.8 81 39.5
RcHm_v2.0_Chr6g0270311 Rosa chinensis HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 39.8
RcHm_v2.0_Chr6g0270411 Rosa chinensis HOM05D000258 ORTHO05D000153 5.1e-06 55.8 83 39.8
Thecc.01G086500 Theobroma cacao HOM05D000258 ORTHO05D000153 5.1e-06 55.8 74 41.9
TWI77G0953 Tripterygium wilfordii HOM05D000258 ORTHO05D000153 5.1e-06 55.8 74 43.2
vmacro03449 Vaccinium macrocarpon HOM05D000258 ORTHO05D000153 5.1e-06 55.8 90 36.7
DCAR_029111 Daucus carota HOM05D000258 ORTHO05D000153 6.7e-06 55.5 74 45.9
DCAR_029701 Daucus carota HOM05D000258 ORTHO05D000153 6.7e-06 55.5 74 45.9
FvH4_1g19261 Fragaria vesca HOM05D000258 ORTHO05D000153 6.7e-06 55.5 81 42.0
FAN28G1018 Fragaria x ananassa HOM05D000258 ORTHO05D000153 6.7e-06 55.5 81 39.5
Lj2g0002203 Lotus japonicus HOM05D000258 ORTHO05D000153 6.7e-06 55.5 81 40.7
SHI21755 Sapria himalayana HOM05D000258 ORTHO05D000153 6.7e-06 55.5 76 46.1
SGA_v2.0_scaffold292G47392 Striga asiatica HOM05D000258 ORTHO05D000153 6.7e-06 55.5 83 43.4
TAR381G1632 Trochodendron aralioides HOM05D000258 ORTHO05D000153 6.7e-06 55.5 81 40.7
TAR628G1138 Trochodendron aralioides HOM05D000258 ORTHO05D000153 6.7e-06 55.5 81 40.7
HPP92_012454 Vanilla planifolia HOM05D000258 ORTHO05D000153 6.7e-06 55.5 90 40.0
BcaNung00956 Brassica carinata HOM05D000258 ORTHO05D000153 8.8e-06 55.1 83 39.8
A01p01100 Brassica napus HOM05D000258 ORTHO05D000153 8.8e-06 55.1 83 41.0
C01p01220 Brassica napus HOM05D000258 ORTHO05D000153 8.8e-06 55.1 83 39.8
BolC1t00120H Brassica oleracea HOM05D000258 ORTHO05D000153 8.8e-06 55.1 83 39.8
BraA01t00108Z Brassica rapa HOM05D000258 ORTHO05D000153 8.8e-06 55.1 83 41.0
AUR62003695 Chenopodium quinoa HOM05D000258 ORTHO05D000153 8.8e-06 55.1 81 38.3
AUR62026235 Chenopodium quinoa HOM05D000258 ORTHO05D000153 8.8e-06 55.1 76 42.1
Cc07_g13710 Coffea canephora HOM05D000258 ORTHO05D000153 8.8e-06 55.1 83 39.8
DCAR_026469 Daucus carota HOM05D000258 ORTHO05D000153 8.8e-06 55.1 74 44.6
ECA238G1956 Erigeron canadensis HOM05D000258 ORTHO05D000153 8.8e-06 55.1 92 39.1
Glyma.18G177000 Glycine max HOM05D000258 ORTHO05D000153 8.8e-06 55.1 83 43.4
Lj6P824T53 Lonicera japonica HOM05D000258 ORTHO05D000153 8.8e-06 55.1 83 39.8
Nitab4.5_0000402g0170 Nicotiana tabacum HOM05D000258 ORTHO05D000153 8.8e-06 55.1 83 39.8
Phvul.002G144800 Phaseolus vulgaris HOM05D000258 ORTHO05D000153 8.8e-06 55.1 83 41.0
Prupe.6G205700 Prunus persica HOM05D000258 ORTHO05D000153 8.8e-06 55.1 81 39.5
Sopen11g005710 Solanum pennellii HOM05D000258 ORTHO05D000153 8.8e-06 55.1 74 41.9
TPR.G27181 Trifolium pratense HOM05D000258 ORTHO05D000153 8.8e-06 55.1 81 39.5


User provided reference genes

Program Settings