Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 2.5e-136 488.8 248 100.0
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 2.7e-74 282.7 250 58.4
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 3.9e-73 278.9 249 55.4
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 1.2e-69 267.3 253 55.3
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 2.6e-69 266.2 250 56.0
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 7.5e-69 264.6 250 56.8
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 1.3e-68 263.8 245 56.7
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.7e-68 263.5 250 55.6
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 2.2e-68 263.1 251 54.2
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 2.2e-68 263.1 249 55.0
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 2.2e-68 263.1 250 56.0
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 2.9e-68 262.7 248 55.6
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 4.9e-68 261.9 250 54.4
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 6.4e-68 261.5 250 56.8
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 6.4e-68 261.5 248 53.2
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 1.4e-67 260.4 257 54.9
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.9e-67 260.0 250 55.2
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 3.2e-67 259.2 255 53.7
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 7.1e-67 258.1 248 52.8
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 9.2e-67 257.7 246 52.4
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 1.6e-66 256.9 258 54.7
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 1.6e-66 256.9 258 54.7
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 3.5e-66 255.8 250 55.2
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 1.0e-65 254.2 242 55.4
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.3e-65 253.1 258 54.3
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 3.0e-65 252.7 249 53.8
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 1.1e-64 250.8 252 52.8
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 1.5e-64 250.4 251 53.8
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 4.3e-64 248.8 256 52.7
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 4.3e-64 248.8 250 52.8
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 4.3e-64 248.8 249 53.8
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 7.3e-64 248.1 250 52.0
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 1.2e-63 247.3 249 52.6
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.6e-63 246.9 257 53.7
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 2.1e-63 246.5 249 51.8
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 3.6e-63 245.7 213 56.8
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 8.1e-63 244.6 257 52.9
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 2.4e-62 243.0 250 52.8
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 2.4e-62 243.0 252 52.0
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 3.1e-62 242.7 250 52.8
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 5.2e-62 241.9 201 61.7
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 6.8e-62 241.5 251 51.0
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 8.9e-62 241.1 250 53.2
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 8.9e-62 241.1 250 52.0
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 1.5e-61 240.4 250 52.0
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 2.6e-61 239.6 271 51.7
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 3.4e-61 239.2 253 51.0
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 4.4e-61 238.8 250 52.0
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 7.6e-61 238.0 250 52.0
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 9.9e-61 237.7 250 52.4
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 9.9e-61 237.7 249 51.8
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 2.2e-60 236.5 251 52.2
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 3.8e-60 235.7 249 51.4
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 4.2e-59 232.3 250 51.2
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 2.1e-58 229.9 250 51.6
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 4.6e-58 228.8 250 49.6
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 6.0e-58 228.4 252 51.2
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 7.8e-58 228.0 250 50.8
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 7.8e-58 228.0 250 51.2
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 1.0e-57 227.6 251 51.4
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 1.3e-57 227.3 251 50.6
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 1.7e-57 226.9 251 51.8
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 1.7e-57 226.9 226 53.5
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 3.0e-57 226.1 251 51.4
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 1.1e-56 224.2 276 47.5
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 4.3e-56 222.2 250 49.6
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 4.3e-56 222.2 251 50.2
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 4.7e-55 218.8 209 55.5
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 1.8e-54 216.9 250 48.8
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 9.0e-54 214.5 250 45.6
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 5.8e-53 211.8 249 48.2
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 7.6e-53 211.5 311 41.5
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 1.6e-50 203.8 250 44.8
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 1.5e-48 197.2 251 43.4
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 4.3e-48 195.7 251 45.4
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 1.6e-47 193.7 251 44.2
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 1.4e-46 190.7 251 44.6
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 4.5e-45 185.7 258 41.1
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 9.9e-45 184.5 189 52.4
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 9.9e-45 184.5 254 41.7
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 8.4e-44 181.4 259 39.8
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 1.1e-43 181.0 254 40.6
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 2.4e-43 179.9 235 41.3
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 3.5e-42 176.0 189 49.2
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 1.0e-41 174.5 191 49.7
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 1.9e-40 170.2 232 43.1
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 4.3e-40 169.1 250 42.4
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 2.1e-39 166.8 252 40.9
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 3.4e-37 159.5 162 51.9
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 2.3e-33 146.7 191 44.5
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.1e-32 144.4 215 41.9
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 5.6e-32 142.1 215 41.4
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 7.4e-32 141.7 217 38.7
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.1e-31 140.2 121 59.5
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 2.0e-29 133.7 315 32.1
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 7.6e-29 131.7 94 64.9
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 7.6e-29 131.7 264 34.8
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 3.8e-28 129.4 156 47.4
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 4.9e-28 129.0 157 46.5
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 8.4e-28 128.3 176 42.0
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.4e-27 127.5 156 46.8
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 1.9e-27 127.1 210 37.1
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 2.7e-26 123.2 218 39.4
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 1.6e-23 114.0 173 37.6
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 2.2e-23 113.6 239 36.4
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 3.8e-20 102.8 156 41.0
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 1.6e-18 97.4 95 51.6
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 2.1e-18 97.1 72 61.1
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 7.9e-10 68.6 70 54.3
Medtr7g062690 Medicago truncatula HOM05D006045 ORTHO05D007678 1.4e-09 67.8 77 42.9
TPR.G40448 Trifolium pratense HOM05D006045 ORTHO05D007678 3.7e-07 59.7 58 48.3
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 2.4e-06 57.0 127 29.9


User provided reference genes

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