Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 7.7e-109 397.1 197 100.0
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.1e-99 366.7 250 78.0
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.6e-53 213.4 196 54.1
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 3.5e-53 212.2 195 54.9
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 6.0e-53 211.5 208 53.4
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 2.5e-51 206.1 197 53.8
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 2.8e-50 202.6 183 54.6
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 3.1e-49 199.1 194 54.1
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 6.9e-49 198.0 189 53.4
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 9.0e-49 197.6 189 51.3
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 9.0e-49 197.6 208 47.6
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 2.6e-48 196.1 204 48.5
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 4.5e-48 195.3 204 48.0
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.0e-47 194.1 194 51.0
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 1.3e-47 193.7 193 52.3
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.2e-47 193.0 206 49.0
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.2e-47 193.0 206 49.0
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 2.2e-47 193.0 189 50.3
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 2.2e-47 193.0 190 50.5
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 4.9e-47 191.8 196 49.5
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 1.4e-46 190.3 191 49.2
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.4e-46 190.3 194 50.5
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.4e-46 190.3 207 47.8
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 2.5e-46 189.5 207 47.3
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 4.2e-46 188.7 198 52.5
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 5.5e-46 188.3 193 48.2
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 5.5e-46 188.3 197 49.7
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 9.3e-46 187.6 193 49.7
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.2e-45 187.2 197 52.8
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 1.2e-45 187.2 195 49.2
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.2e-45 187.2 195 48.7
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.2e-45 187.2 195 47.7
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.2e-45 187.2 204 48.5
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.6e-45 186.8 193 48.7
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.6e-45 186.8 193 50.3
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.6e-45 186.8 195 49.2
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 3.5e-45 185.7 197 48.7
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 3.5e-45 185.7 193 50.3
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 4.6e-45 185.3 201 48.8
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 4.6e-45 185.3 193 50.3
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 6.0e-45 184.9 193 48.7
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 7.9e-45 184.5 190 48.9
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.3e-44 183.7 192 49.5
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.8e-44 183.3 192 48.4
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 5.1e-44 181.8 191 48.2
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 5.1e-44 181.8 191 48.7
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.7e-44 181.4 199 47.7
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 8.7e-44 181.0 193 47.7
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 8.7e-44 181.0 191 47.1
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 1.1e-43 180.6 193 50.3
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.9e-43 179.9 194 45.4
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.5e-43 179.5 190 47.4
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.5e-43 179.5 190 47.9
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 3.3e-43 179.1 193 49.2
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 3.3e-43 179.1 194 48.5
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.3e-43 179.1 192 44.8
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 7.4e-43 177.9 193 47.2
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 7.4e-43 177.9 188 48.4
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 7.4e-43 177.9 202 47.5
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 9.6e-43 177.6 191 50.8
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 1.3e-42 177.2 191 46.6
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.6e-42 176.8 195 46.7
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.6e-42 176.8 192 51.6
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 1.6e-42 176.8 199 45.7
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.6e-42 176.8 195 47.7
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.6e-42 176.8 193 48.7
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.1e-42 176.4 200 47.5
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.1e-42 176.4 201 45.3
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 2.8e-42 176.0 196 45.4
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 2.8e-42 176.0 190 49.5
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 3.7e-42 175.6 198 52.0
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 3.7e-42 175.6 198 47.5
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.8e-42 175.3 190 47.9
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 6.2e-42 174.9 193 47.2
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 6.2e-42 174.9 189 49.2
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 6.2e-42 174.9 193 44.6
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.2e-42 174.5 192 51.0
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.1e-41 174.1 206 44.2
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.1e-41 174.1 186 48.4
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.4e-41 173.7 188 47.3
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.4e-41 173.7 194 47.4
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 1.4e-41 173.7 196 46.4
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.8e-41 173.3 191 49.2
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 3.1e-41 172.6 196 45.9
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 5.3e-41 171.8 195 47.2
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 6.9e-41 171.4 191 48.2
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 6.9e-41 171.4 195 47.7
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 6.9e-41 171.4 193 48.7
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 9.0e-41 171.0 194 46.9
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 1.2e-40 170.6 194 47.4
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 1.2e-40 170.6 178 47.8
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.5e-40 170.2 194 45.4
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 3.4e-40 169.1 190 47.9
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 4.5e-40 168.7 194 45.4
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 4.5e-40 168.7 190 47.9
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 4.5e-40 168.7 191 47.1
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 5.8e-40 168.3 192 46.9
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 5.8e-40 168.3 192 46.9
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 5.8e-40 168.3 191 44.5
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.0e-39 167.5 206 44.7
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.3e-39 167.2 165 50.3
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.3e-39 167.2 165 50.3
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.7e-39 166.8 194 44.8
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.2e-39 166.4 194 44.3
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 2.2e-39 166.4 201 44.3
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 2.9e-39 166.0 194 45.4
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 3.8e-39 165.6 197 45.2
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 3.8e-39 165.6 193 45.1
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 3.8e-39 165.6 194 44.3
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 3.8e-39 165.6 194 44.3
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 3.8e-39 165.6 195 43.1
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.1e-38 164.1 193 45.6
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 3.2e-38 162.5 191 44.5
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 3.9e-36 155.6 196 45.9
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 6.7e-36 154.8 200 44.0
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 8.7e-36 154.5 164 47.6
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.5e-35 152.9 165 47.3
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 9.7e-35 151.0 165 47.3
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.8e-34 149.4 180 43.9
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 6.3e-34 148.3 166 48.8
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 6.3e-34 148.3 177 45.8
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.1e-33 147.5 172 48.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 5.3e-33 145.2 165 50.3
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 6.9e-33 144.8 172 47.7
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.6e-32 142.9 176 44.3
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.6e-32 142.9 176 44.3
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 3.8e-31 139.0 193 42.0
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 2.5e-30 136.3 162 46.9
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.2e-30 136.0 186 44.6
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.6e-29 133.7 189 43.9
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 3.6e-29 132.5 173 42.8
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 5.1e-28 128.6 190 41.1
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 8.8e-28 127.9 155 47.7
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 4.8e-26 122.1 100 56.0
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.1e-25 119.4 154 43.5
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 5.3e-25 118.6 173 41.6
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 3.2e-22 109.4 129 41.9
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 7.2e-22 108.2 217 35.5
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 7.9e-21 104.8 210 33.8
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 5.1e-20 102.1 182 35.7
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.4e-19 99.0 94 50.0
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 5.7e-19 98.6 103 45.6
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 9.7e-19 97.8 137 42.3
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 3.7e-18 95.9 86 53.5
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 5.3e-17 92.0 135 40.7
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.9e-14 83.6 132 39.4
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 3.3e-11 72.8 110 40.9
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.0e-07 61.2 51 62.7
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.8e-07 59.3 51 60.8
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 8.5e-07 58.2 50 56.0
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 3.2e-06 56.2 83 43.4
C03p12380 Brassica napus HOM05D000444 ORTHO05D000489 7.2e-06 55.1 25 92.0


User provided reference genes

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