Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 7.0e-119 430.6 219 100.0
HPP92_026489 Vanilla planifolia HOM05D035551 ORTHO05D003958 5.1e-45 185.3 96 97.9
HPP92_012516 Vanilla planifolia HOM05D035551 ORTHO05D003958 3.2e-23 112.8 213 34.3
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 8.5e-16 88.2 259 30.5
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.1e-15 87.8 251 33.5
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.5e-15 87.4 107 47.7
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 4.2e-15 85.9 98 49.0
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.2e-15 85.9 288 31.6
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 1.2e-14 84.3 277 31.0
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.2e-14 84.3 273 28.9
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 1.6e-14 84.0 91 51.6
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 2.1e-14 83.6 255 28.6
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 4.7e-14 82.4 306 29.7
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 4.7e-14 82.4 280 31.4
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.7e-14 82.4 122 45.9
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 6.1e-14 82.0 117 41.9
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 6.1e-14 82.0 117 41.9
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 8.0e-14 81.6 130 43.8
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 1.4e-13 80.9 236 31.8
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 1.8e-13 80.5 219 33.3
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 1.8e-13 80.5 288 29.5
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 2.3e-13 80.1 234 35.5
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.3e-13 80.1 286 29.7
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 3.0e-13 79.7 237 27.8
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 3.0e-13 79.7 95 48.4
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 4.0e-13 79.3 92 47.8
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 5.2e-13 79.0 187 35.3
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 6.8e-13 78.6 203 33.5
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 1.2e-12 77.8 197 34.0
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.2e-12 77.8 191 34.0
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.5e-12 77.4 193 34.2
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 2.0e-12 77.0 175 33.1
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 2.0e-12 77.0 266 28.6
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.0e-12 77.0 202 33.7
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 2.6e-12 76.6 186 30.6
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 2.6e-12 76.6 189 34.4
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 3.4e-12 76.3 279 32.6
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 3.4e-12 76.3 92 48.9
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 3.4e-12 76.3 233 30.0
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 5.7e-12 75.5 185 33.0
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 7.5e-12 75.1 91 46.2
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 7.5e-12 75.1 248 29.0
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.7e-11 73.9 311 29.3
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 1.7e-11 73.9 103 42.7
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 2.2e-11 73.6 168 33.3
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 2.8e-11 73.2 117 42.7
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.7e-11 72.8 170 34.1
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 3.7e-11 72.8 117 42.7
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 3.7e-11 72.8 236 28.0
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 4.9e-11 72.4 174 31.6
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 4.9e-11 72.4 208 28.4
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 6.3e-11 72.0 255 29.8
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 6.3e-11 72.0 260 27.3
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 6.3e-11 72.0 97 46.4
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 1.1e-10 71.2 180 32.2
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.1e-10 71.2 203 34.5
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.1e-10 71.2 93 46.2
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.4e-10 70.9 266 28.9
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.8e-10 70.5 266 28.9
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 2.4e-10 70.1 227 32.2
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 2.4e-10 70.1 117 41.9
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 3.1e-10 69.7 130 35.4
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 4.1e-10 69.3 99 40.4
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 4.1e-10 69.3 188 33.5
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 5.4e-10 68.9 164 36.6
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 7.0e-10 68.6 164 31.1
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 7.0e-10 68.6 97 43.3
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 7.0e-10 68.6 117 40.2
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 1.2e-09 67.8 182 32.4
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.6e-09 67.4 170 32.9
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.0e-09 67.0 192 31.8
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 2.0e-09 67.0 94 44.7
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.0e-09 67.0 125 36.8
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 3.5e-09 66.2 172 35.5
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 4.5e-09 65.9 210 26.7
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 4.5e-09 65.9 185 35.1
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 4.5e-09 65.9 118 40.7
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 5.9e-09 65.5 91 47.3
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 5.9e-09 65.5 118 39.0
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 5.9e-09 65.5 136 38.2
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.3e-08 64.3 192 29.7
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.3e-08 64.3 225 28.4
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.7e-08 63.9 122 35.2
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.7e-08 63.9 133 35.3
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.7e-08 63.9 133 36.8
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.7e-08 63.9 254 29.1
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.7e-08 63.9 98 42.9
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 2.3e-08 63.5 91 46.2
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 2.3e-08 63.5 91 46.2
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 2.3e-08 63.5 91 46.2
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 2.3e-08 63.5 91 46.2
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.9e-08 63.2 173 32.9
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 2.9e-08 63.2 186 30.6
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 2.9e-08 63.2 193 30.1
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 2.9e-08 63.2 152 34.9
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 2.9e-08 63.2 196 31.1
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 3.8e-08 62.8 116 37.9
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 3.8e-08 62.8 192 30.2
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 3.8e-08 62.8 190 32.1
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 3.8e-08 62.8 186 30.1
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 3.8e-08 62.8 163 33.7
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 5.0e-08 62.4 115 37.4
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 5.0e-08 62.4 187 32.1
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 5.0e-08 62.4 186 32.8
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 6.6e-08 62.0 168 34.5
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 8.6e-08 61.6 281 28.1
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 8.6e-08 61.6 127 35.4
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 8.6e-08 61.6 124 33.9
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 8.6e-08 61.6 127 35.4
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 8.6e-08 61.6 127 35.4
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 8.6e-08 61.6 127 35.4
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-07 61.2 150 34.0
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.1e-07 61.2 148 35.1
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 1.1e-07 61.2 201 31.3
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.5e-07 60.8 199 31.2
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.9e-07 60.5 157 33.8
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.9e-07 60.5 192 29.7
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 2.5e-07 60.1 190 33.2
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 4.3e-07 59.3 165 32.1
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 5.6e-07 58.9 185 31.9
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 5.6e-07 58.9 91 44.0
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 5.6e-07 58.9 172 34.9
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 5.6e-07 58.9 296 28.4
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 7.3e-07 58.5 94 42.6
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 1.2e-06 57.8 185 31.4
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.1e-06 57.0 111 36.0
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 2.1e-06 57.0 175 30.9
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.1e-06 57.0 90 41.1
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 2.1e-06 57.0 94 42.6
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 2.8e-06 56.6 125 35.2
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.8e-06 56.6 113 37.2
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 4.7e-06 55.8 185 31.4
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 4.7e-06 55.8 188 30.3


User provided reference genes

Program Settings