Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 5.7e-186 654.1 318 100.0
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 3.4e-183 644.8 318 98.7
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 3.5e-151 538.5 312 82.4
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 3.5e-151 538.5 318 80.5
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 8.6e-150 533.9 318 80.8
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 3.4e-146 521.9 318 77.7
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 1.3e-145 520.0 318 77.4
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.4e-144 515.8 318 75.8
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 5.4e-144 514.6 318 77.0
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 9.2e-144 513.8 318 75.8
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 9.2e-144 513.8 318 76.4
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 1.2e-143 513.5 318 76.1
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 1.2e-143 513.5 317 75.1
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.6e-143 513.1 318 76.1
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 1.6e-143 513.1 318 77.7
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 2.5e-141 505.8 317 74.8
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 5.6e-141 504.6 318 74.2
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 7.3e-141 504.2 317 76.3
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 9.5e-141 503.8 318 75.2
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 9.5e-141 503.8 319 74.6
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 2.8e-140 502.3 317 73.8
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 3.6e-140 501.9 317 73.8
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 4.7e-140 501.5 317 75.7
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 6.1e-140 501.1 316 77.5
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 1.4e-139 500.0 317 74.1
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 1.4e-139 500.0 336 72.9
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 2.3e-139 499.2 319 75.9
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 2.3e-139 499.2 317 74.4
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 2.3e-139 499.2 317 75.4
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 3.0e-139 498.8 317 75.4
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 5.2e-139 498.0 319 75.9
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 8.9e-139 497.3 318 73.6
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.2e-138 496.9 318 73.0
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 2.6e-138 495.7 320 75.3
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 2.6e-138 495.7 318 73.9
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 9.8e-138 493.8 319 74.0
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 9.8e-138 493.8 318 73.0
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 9.8e-138 493.8 317 72.9
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 1.3e-137 493.4 317 72.2
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 4.9e-137 491.5 318 72.0
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 1.1e-136 490.3 318 72.0
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 1.8e-136 489.6 318 72.0
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 2.4e-136 489.2 318 74.2
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 3.2e-136 488.8 318 72.0
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 3.2e-136 488.8 318 72.0
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 3.2e-136 488.8 317 71.6
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 4.1e-136 488.4 317 71.3
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 1.2e-135 486.9 318 71.7
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 3.5e-135 485.3 318 70.4
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 3.5e-135 485.3 317 71.3
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 3.5e-135 485.3 318 72.6
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 4.6e-135 485.0 318 70.4
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 7.8e-135 484.2 318 70.4
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.0e-134 483.8 318 72.3
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 1.3e-134 483.4 318 71.7
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 2.3e-134 482.6 333 70.0
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 2.3e-134 482.6 318 71.1
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.0e-134 482.3 316 75.6
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 5.0e-134 481.5 315 72.1
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.9e-133 479.6 318 69.8
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.3e-133 478.4 317 71.3
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 4.3e-133 478.4 318 70.1
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 5.6e-133 478.0 318 71.1
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 7.3e-133 477.6 318 69.2
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 1.2e-132 476.9 318 69.2
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.6e-132 476.5 318 69.8
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 2.1e-132 476.1 317 71.3
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 2.1e-132 476.1 337 67.1
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 2.8e-132 475.7 319 71.8
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 3.6e-132 475.3 317 69.7
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 4.7e-132 474.9 316 70.9
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 4.7e-132 474.9 318 70.4
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 1.1e-131 473.8 317 70.3
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 1.8e-131 473.0 318 69.8
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 2.3e-131 472.6 318 69.8
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 2.3e-131 472.6 317 69.7
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 1.5e-130 469.9 319 69.3
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 7.5e-130 467.6 318 68.9
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 2.2e-129 466.1 330 67.3
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 4.9e-129 464.9 379 61.2
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 6.4e-129 464.5 318 72.3
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 6.0e-127 458.0 339 67.6
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 3.0e-126 455.7 348 65.5
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 1.5e-125 453.4 317 67.2
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 4.3e-125 451.8 317 66.6
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 2.1e-124 449.5 293 75.1
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 8.1e-124 447.6 282 74.8
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 6.8e-123 444.5 360 62.2
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 3.4e-122 442.2 317 65.3
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 5.4e-120 434.9 361 60.4
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 9.2e-120 434.1 276 73.2
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 6.0e-119 431.4 317 65.3
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.3e-118 430.3 282 73.0
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.1e-116 422.9 318 67.0
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 4.7e-116 421.8 290 67.2
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 6.2e-116 421.4 318 67.3
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 3.1e-115 419.1 312 66.7
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 1.2e-111 407.1 316 64.9
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 6.0e-111 404.8 318 60.7
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.5e-106 390.2 282 65.6
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 6.4e-105 384.8 318 60.7
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.1e-93 347.4 315 59.4
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 1.4e-88 330.5 210 72.4
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.2e-87 327.4 207 73.4
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 6.2e-84 315.1 317 53.3
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 6.2e-84 315.1 314 55.7
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 5.3e-83 312.0 322 48.1
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 6.5e-81 305.1 321 47.7
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 7.1e-80 301.6 196 74.0
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 8.7e-78 294.7 322 48.4
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.9e-77 293.5 198 74.2
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 3.3e-77 292.7 174 80.5
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 7.2e-72 275.0 170 76.5
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 3.0e-70 269.6 275 48.0
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 7.0e-59 231.9 297 44.4
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 1.2e-58 231.1 214 58.9
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.6e-55 220.7 161 69.6
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 3.2e-40 169.9 240 43.3
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 8.0e-39 165.2 111 71.2
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 6.8e-38 162.2 111 70.3
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 1.2e-37 161.4 111 68.5
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 2.0e-37 160.6 110 66.4
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 2.0e-37 160.6 118 61.0
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 6.3e-36 155.6 112 62.5
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 5.9e-34 149.1 93 71.0
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 5.0e-33 146.0 143 57.3
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 5.2e-30 136.0 85 71.8
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 2.9e-25 120.2 293 32.4
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.9e-25 120.2 225 37.3
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 5.6e-24 115.9 75 70.7
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.8e-22 110.9 79 70.9
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 2.2e-20 104.0 63 77.8
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 2.1e-15 87.4 62 71.0
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.1e-14 85.1 55 70.9
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 6.8e-14 82.4 72 61.1
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.2e-13 81.6 85 47.1
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 1.7e-09 67.8 310 24.8
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 6.6e-09 65.9 126 31.0
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 3.6e-07 60.1 49 59.2
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 1.4e-06 58.2 36 63.9


User provided reference genes

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