Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.6e-202 708.0 348 100.0
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.9e-86 323.6 270 59.3
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 5.6e-86 322.0 274 57.3
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 8.1e-85 318.2 272 57.4
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 1.1e-84 317.8 276 57.6
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.8e-84 317.0 266 58.3
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 1.5e-83 313.9 269 57.2
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 3.4e-83 312.8 278 55.0
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 5.8e-83 312.0 267 56.9
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 7.6e-83 311.6 285 55.4
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 9.9e-83 311.2 267 56.9
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 1.7e-82 310.5 266 59.0
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 2.2e-82 310.1 273 54.9
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 2.2e-82 310.1 268 58.2
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 2.2e-82 310.1 294 53.1
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 2.9e-82 309.7 273 56.8
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.9e-82 308.9 270 57.0
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 6.4e-82 308.5 271 57.2
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 6.4e-82 308.5 271 57.2
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 8.4e-82 308.1 269 56.1
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.9e-81 307.0 278 54.3
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.9e-81 307.0 269 56.1
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.4e-81 306.6 261 58.2
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 4.1e-81 305.8 289 54.7
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 5.4e-81 305.4 268 54.9
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 5.4e-81 305.4 270 56.3
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 5.4e-81 305.4 271 56.1
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 5.4e-81 305.4 268 57.1
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 1.6e-80 303.9 264 55.3
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 2.7e-80 303.1 270 57.4
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.7e-80 303.1 269 55.4
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 2.7e-80 303.1 269 55.0
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 3.5e-80 302.8 268 56.3
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 6.0e-80 302.0 266 54.9
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 1.0e-79 301.2 268 55.2
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.0e-79 301.2 270 57.0
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.3e-79 300.8 271 55.0
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 3.0e-79 299.7 268 56.7
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 3.0e-79 299.7 279 56.3
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 3.0e-79 299.7 266 56.4
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 8.6e-79 298.1 366 45.1
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 8.6e-79 298.1 266 56.0
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 8.6e-79 298.1 267 55.4
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.1e-78 297.7 266 56.0
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.5e-78 297.4 268 54.9
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 2.5e-78 296.6 281 53.7
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 2.5e-78 296.6 267 54.3
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 2.5e-78 296.6 270 54.8
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 3.3e-78 296.2 268 55.6
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 3.3e-78 296.2 268 55.6
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 3.3e-78 296.2 272 55.5
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 5.6e-78 295.4 273 54.9
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 9.6e-78 294.7 276 52.5
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.6e-77 293.9 272 53.3
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 3.6e-77 292.7 269 54.6
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 4.7e-77 292.4 268 54.9
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 4.7e-77 292.4 282 53.5
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 8.1e-77 291.6 309 49.2
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.1e-76 291.2 267 53.9
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 1.8e-76 290.4 359 45.4
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 1.8e-76 290.4 310 50.0
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 3.1e-76 289.7 269 53.9
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 5.2e-76 288.9 262 56.1
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.5e-75 287.3 268 53.0
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 2.6e-75 286.6 276 54.0
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 5.8e-75 285.4 266 53.8
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 9.9e-75 284.6 282 52.5
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.9e-74 283.1 282 51.1
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.8e-74 282.7 342 45.9
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 4.9e-74 282.3 266 53.0
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 4.9e-74 282.3 272 54.0
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 6.4e-74 282.0 309 49.8
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.1e-73 281.2 266 53.0
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 1.1e-73 281.2 282 51.8
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.1e-73 281.2 282 50.4
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 2.4e-73 280.0 264 55.3
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 4.2e-73 279.3 277 50.2
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 5.4e-73 278.9 282 50.4
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 7.1e-73 278.5 282 50.0
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 9.3e-73 278.1 246 56.5
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 9.3e-73 278.1 263 51.7
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 9.3e-73 278.1 266 53.4
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 1.6e-72 277.3 271 52.4
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.1e-72 276.9 267 52.1
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 2.7e-72 276.6 270 50.0
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 6.0e-72 275.4 265 53.2
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 1.7e-71 273.9 266 54.1
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.9e-71 272.7 369 45.0
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.5e-70 270.0 270 51.9
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 7.3e-70 268.5 267 52.1
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 9.6e-70 268.1 267 52.4
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 2.1e-69 266.9 288 49.3
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 4.8e-69 265.8 267 51.7
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 6.2e-69 265.4 267 52.1
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 6.2e-69 265.4 267 51.3
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.4e-68 264.2 300 47.7
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.8e-68 263.8 271 50.2
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.0e-68 262.7 366 44.3
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 4.0e-68 262.7 269 52.4
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 2.0e-67 260.4 300 47.0
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 2.0e-67 260.4 300 47.0
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 2.2e-66 256.9 298 47.0
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 6.4e-66 255.4 266 49.6
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 2.4e-65 253.4 294 46.9
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 4.2e-65 252.7 230 54.8
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 2.1e-64 250.4 320 45.0
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 7.9e-64 248.4 304 45.4
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 7.4e-62 241.9 273 46.5
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.8e-61 240.0 247 51.0
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 7.6e-59 231.9 303 44.2
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 4.9e-58 229.2 280 46.8
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.9e-57 227.3 259 50.2
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.3e-55 221.1 326 40.5
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 7.4e-54 215.3 195 55.4
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.8e-53 213.4 321 43.0
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 5.8e-51 205.7 260 45.4
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 2.2e-50 203.8 189 52.9
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.6e-48 196.1 177 54.8
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.9e-46 190.7 260 42.7
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 5.9e-43 179.1 272 38.6
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 5.7e-38 162.5 137 55.5
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.4e-36 157.1 277 33.6
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 2.0e-35 154.1 174 46.6
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 2.6e-35 153.7 282 34.0
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 4.6e-32 142.9 285 32.3
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 3.9e-31 139.8 133 52.6
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 2.0e-30 137.5 109 56.9
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.9e-28 129.0 260 37.3
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 9.1e-28 128.6 252 36.9
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 3.4e-27 126.7 277 30.7
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 7.7e-27 125.6 137 49.6
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 6.3e-21 105.9 93 52.7
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.0e-19 100.9 119 44.5
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 3.5e-19 100.1 91 51.6
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 6.1e-16 89.4 80 52.5
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 4.4e-14 83.2 74 51.4
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.2e-10 70.9 56 55.4
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.2e-08 65.1 50 58.0
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 6.1e-08 62.8 74 47.3
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.3e-07 60.8 103 36.9
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 2.6e-06 57.4 66 42.4
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 5.7e-06 56.2 68 45.6
Os07g0510350 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 7.5e-06 55.8 35 68.6


User provided reference genes

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