Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014179 Vanilla planifolia HOM05D001078 ORTHO05D000927 2.1e-280 968.4 490 100.0
QL07p008165 Quercus lobata HOM05D001078 ORTHO05D000927 1.4e-29 135.2 509 29.3
Cfa020326 Carpinus fangiana HOM05D001078 ORTHO05D000927 2.3e-29 134.4 520 29.4
QL08p009613 Quercus lobata HOM05D001078 ORTHO05D000927 5.2e-29 133.3 509 29.3
VMungo0647G0084 Vigna mungo HOM05D001078 ORTHO05D000927 2.0e-28 131.3 516 28.3
Prupe.4G215800 Prunus persica HOM05D001078 ORTHO05D000927 9.8e-28 129.0 509 28.3
CiPaw.11G191200 Carya illinoinensis HOM05D001078 ORTHO05D000927 1.1e-26 125.6 513 27.9
Haze_09697 Corylus avellana HOM05D001078 ORTHO05D000927 2.4e-26 124.4 520 28.8
Phvul.008G268700 Phaseolus vulgaris HOM05D001078 ORTHO05D000927 2.4e-26 124.4 518 27.4
CiPaw.12G131000 Carya illinoinensis HOM05D001078 ORTHO05D000927 1.2e-25 122.1 519 28.3
MSTRG.12982 Avicennia marina HOM05D001078 ORTHO05D000927 3.5e-25 120.6 528 29.7
Nitab4.5_0002287g0090 Nicotiana tabacum HOM05D001078 ORTHO05D000927 3.5e-25 120.6 533 27.4
Solyc07g064700.4 Solanum lycopersicum HOM05D001078 ORTHO05D000927 5.9e-25 119.8 522 27.6
Sopen07g032900 Solanum pennellii HOM05D001078 ORTHO05D000927 5.9e-25 119.8 530 28.1
TPR.G1187 Trifolium pratense HOM05D001078 ORTHO05D000927 1.3e-24 118.6 532 28.6
DCAR_016713 Daucus carota HOM05D001078 ORTHO05D000927 2.3e-24 117.9 519 27.0
Nitab4.5_0005590g0030 Nicotiana tabacum HOM05D001078 ORTHO05D000927 3.8e-24 117.1 527 26.9
Sed0021197 Sechium edule HOM05D001078 ORTHO05D000927 3.8e-24 117.1 511 27.4
Medtr5g093070 Medicago truncatula HOM05D001078 ORTHO05D000927 6.6e-24 116.3 526 27.0
CsaV3_7G021900 Cucumis sativus L. HOM05D001078 ORTHO05D000927 8.6e-24 115.9 513 26.7
FAN25G0643 Fragaria x ananassa HOM05D001078 ORTHO05D000927 1.5e-23 115.2 511 27.2
Ca_06328_v3 Cicer arietinum L. HOM05D001078 ORTHO05D000927 1.9e-23 114.8 522 28.2
Ca_30699_v3 Cicer arietinum L. HOM05D001078 ORTHO05D000927 1.9e-23 114.8 522 28.2
FAN21G1620 Fragaria x ananassa HOM05D001078 ORTHO05D000927 1.9e-23 114.8 513 26.9
CSS0032528 Camellia sinensis var. sinensis HOM05D001078 ORTHO05D000927 2.5e-23 114.4 522 27.4
FAN11G3397 Fragaria x ananassa HOM05D001078 ORTHO05D000927 2.5e-23 114.4 512 26.8
FAN25G2972 Fragaria x ananassa HOM05D001078 ORTHO05D000927 2.5e-23 114.4 513 26.9
MELO3C013156.2 Cucumis melo HOM05D001078 ORTHO05D000927 3.3e-23 114.0 517 27.7
Manes.03G131200 Manihot esculenta HOM05D001078 ORTHO05D000927 3.3e-23 114.0 517 27.7
TWI39G0966 Tripterygium wilfordii HOM05D001078 ORTHO05D000927 3.3e-23 114.0 536 27.4
FvH4_3g22980 Fragaria vesca HOM05D001078 ORTHO05D000927 4.3e-23 113.6 512 26.8
MBI18_g06103_MAGBIO Magnolia biondii HOM05D001078 ORTHO05D000927 4.3e-23 113.6 517 27.1
VMungo0540G0032 Vigna mungo HOM05D001078 ORTHO05D000927 4.3e-23 113.6 506 26.7
CSS0032882 Camellia sinensis var. sinensis HOM05D001078 ORTHO05D000927 9.5e-23 112.5 512 26.8
COL.COLO4_09674 Corchorus olitorius HOM05D001078 ORTHO05D000927 1.2e-22 112.1 528 26.3
FAN16G3411 Fragaria x ananassa HOM05D001078 ORTHO05D000927 1.2e-22 112.1 513 26.9
TWI38G0838 Tripterygium wilfordii HOM05D001078 ORTHO05D000927 1.6e-22 111.7 525 28.0
TAR624G0730 Trochodendron aralioides HOM05D001078 ORTHO05D000927 2.8e-22 110.9 537 29.1
PGSC0003DMG400022213 Solanum tuberosum HOM05D001078 ORTHO05D000927 6.1e-22 109.8 531 27.7
RcHm_v2.0_Chr5g0040321 Rosa chinensis HOM05D001078 ORTHO05D000927 1.0e-21 109.0 512 26.8
MSTRG.14439 Avicennia marina HOM05D001078 ORTHO05D000927 1.4e-21 108.6 514 27.0
Peaxi162Scf00235g00321 Petunia axillaris HOM05D001078 ORTHO05D000927 1.8e-21 108.2 519 27.4
Eucgr.F03477 Eucalyptus grandis HOM05D001078 ORTHO05D000927 2.3e-21 107.8 520 26.3
Ciclev10007654m.g Citrus clementina HOM05D001078 ORTHO05D000927 3.0e-21 107.5 510 27.1
Phvul.006G045600 Phaseolus vulgaris HOM05D001078 ORTHO05D000927 3.0e-21 107.5 504 25.8
Atru.chr2.3452 Acer truncatum HOM05D001078 ORTHO05D000927 5.2e-21 106.7 516 26.2
Glyma.18G095200 Glycine max HOM05D001078 ORTHO05D000927 1.2e-20 105.5 512 26.6
Nn1g07159 Nelumbo nucifera HOM05D001078 ORTHO05D000927 1.2e-20 105.5 521 27.6
Actinidia05089 Actinidia chinensis HOM05D001078 ORTHO05D000927 1.5e-20 105.1 536 27.8
Glyma.08G318200 Glycine max HOM05D001078 ORTHO05D000927 1.5e-20 105.1 512 27.1
RhsimUnG0249300 Rhododendron simsii HOM05D001078 ORTHO05D000927 1.5e-20 105.1 527 28.3
arahy.Tifrunner.gnm1.ann1.CUFW55 Arachis hypogaea HOM05D001078 ORTHO05D000927 2.0e-20 104.8 512 27.3
Thecc.07G033900 Theobroma cacao HOM05D001078 ORTHO05D000927 2.0e-20 104.8 520 26.5
CAN.G337.81 Capsicum annuum HOM05D001078 ORTHO05D000927 2.6e-20 104.4 536 28.2
Actinidia35357 Actinidia chinensis HOM05D001078 ORTHO05D000927 4.4e-20 103.6 525 26.9
Cc05_g13930 Coffea canephora HOM05D001078 ORTHO05D000927 5.7e-20 103.2 521 26.1
Migut.H01816 Erythranthe guttata HOM05D001078 ORTHO05D000927 5.7e-20 103.2 528 26.9
arahy.Tifrunner.gnm1.ann1.Z8B0E4 Arachis hypogaea HOM05D001078 ORTHO05D000927 7.5e-20 102.8 509 28.7
TAR626G0690 Trochodendron aralioides HOM05D001078 ORTHO05D000927 7.5e-20 102.8 517 30.0
PGR083G1710 Punica granatum HOM05D001078 ORTHO05D000927 9.8e-20 102.4 532 25.9
Glyma.08G318100 Glycine max HOM05D001078 ORTHO05D000927 1.7e-19 101.7 583 24.2
arahy.Tifrunner.gnm1.ann1.R0BHUP Arachis hypogaea HOM05D001078 ORTHO05D000927 2.9e-19 100.9 509 28.5
Zm00001eb322530 Zea mays HOM05D001078 ORTHO05D000927 1.1e-18 99.0 238 33.2
Gohir.D05G372200 Gossypium hirsutum HOM05D001078 ORTHO05D000927 1.8e-18 98.2 197 38.1
Gorai.009G440400 Gossypium raimondii HOM05D001078 ORTHO05D000927 1.8e-18 98.2 197 38.1
Nn1g03501 Nelumbo nucifera HOM05D001078 ORTHO05D000927 2.4e-18 97.8 520 27.3
vmacro02227 Vaccinium macrocarpon HOM05D001078 ORTHO05D000927 2.4e-18 97.8 509 26.5
vmacro09702 Vaccinium macrocarpon HOM05D001078 ORTHO05D000927 3.2e-18 97.4 514 25.5
TAR627G0281 Trochodendron aralioides HOM05D001078 ORTHO05D000927 9.2e-18 95.9 293 33.4
TPR.G33790 Trifolium pratense HOM05D001078 ORTHO05D000927 1.2e-17 95.5 507 26.4
Cpa.g.sc12.291 Carica papaya HOM05D001078 ORTHO05D000927 1.6e-17 95.1 512 25.8
Zm00001eb105830 Zea mays HOM05D001078 ORTHO05D000927 2.0e-17 94.7 238 31.9
Actinidia10740 Actinidia chinensis HOM05D001078 ORTHO05D000927 4.6e-17 93.6 525 25.1
CANSAT11G0386 Cannabis sativa HOM05D001078 ORTHO05D000927 4.6e-17 93.6 520 25.2
Gohir.A04G014100 Gossypium hirsutum HOM05D001078 ORTHO05D000927 5.9e-17 93.2 197 36.5
Aqoxy1G02099 Aquilegia oxysepala HOM05D001078 ORTHO05D000927 1.3e-16 92.0 534 25.5
Os07g0511900 Oryza sativa ssp. japonica HOM05D001078 ORTHO05D000927 1.3e-16 92.0 235 31.1
Lj8A170G78 Lonicera japonica HOM05D001078 ORTHO05D000927 2.3e-16 91.3 513 25.1
Rhsim06G0218500 Rhododendron simsii HOM05D001078 ORTHO05D000927 2.3e-16 91.3 545 24.0
Psat5g176480 Pisum sativum HOM05D001078 ORTHO05D000927 3.0e-16 90.9 518 28.2
Dinv40767 Davidia involucrata HOM05D001078 ORTHO05D000927 6.6e-16 89.7 517 25.3
Dinv22255 Davidia involucrata HOM05D001078 ORTHO05D000927 1.1e-15 89.0 495 25.7
LjContig00272g0005281 Lotus japonicus HOM05D001078 ORTHO05D000927 1.1e-15 89.0 516 23.4
MD11G1215500 Malus domestica HOM05D001078 ORTHO05D000927 1.1e-15 89.0 525 25.5
Duzib213G0265 Durio zibethinus HOM05D001078 ORTHO05D000927 3.3e-15 87.4 179 37.4
ECA246G0232 Erigeron canadensis HOM05D001078 ORTHO05D000927 7.3e-15 86.3 516 26.4
MD03G1199100 Malus domestica HOM05D001078 ORTHO05D000927 1.2e-14 85.5 173 39.3
Manes.03G131100 Manihot esculenta HOM05D001078 ORTHO05D000927 1.2e-14 85.5 531 25.2
Lalb_Chr17g0348511 Lupinus albus HOM05D001078 ORTHO05D000927 1.4e-13 82.0 219 34.2
HanXRQChr05g0159511 Helianthus annuus HOM05D001078 ORTHO05D000927 3.1e-13 80.9 524 26.7
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 6.8e-13 79.7 507 27.0
THA.LOC104811614 Tarenaya hassleriana HOM05D001078 ORTHO05D000927 8.9e-13 79.3 499 23.8
Oeu042944.1 Olea europaea HOM05D001078 ORTHO05D000927 1.2e-12 79.0 326 28.8
Aa31LG3G10930 Aethionema arabicum HOM05D001078 ORTHO05D000927 2.0e-12 78.2 512 24.6
PSO675G7296 Papaver somniferum HOM05D001078 ORTHO05D000927 2.6e-12 77.8 506 25.3
AT5G55040 Arabidopsis thaliana HOM05D001078 ORTHO05D000927 3.4e-12 77.4 527 25.8
Psat2g011520 Pisum sativum HOM05D001078 ORTHO05D000927 5.8e-12 76.6 557 23.7
Carub.0008s1531 Capsella rubella HOM05D001078 ORTHO05D000927 7.5e-12 76.3 502 24.3
Lj6g0014414 Lotus japonicus HOM05D001078 ORTHO05D000927 3.7e-11 73.9 515 24.9
Medtr3g052530 Medicago truncatula HOM05D001078 ORTHO05D000927 3.7e-11 73.9 505 24.2
Sp6g16970 Schrenkiella parvula HOM05D001078 ORTHO05D000927 4.9e-11 73.6 539 25.0
AL8G30520 Arabidopsis lyrata HOM05D001078 ORTHO05D000927 6.4e-11 73.2 520 25.2
PSO210G0993 Papaver somniferum HOM05D001078 ORTHO05D000927 4.1e-10 70.5 593 23.4
SGA_v2.0_scaffold43G16258 Striga asiatica HOM05D001078 ORTHO05D000927 5.4e-10 70.1 159 38.4
CARHR268360 Cardamine hirsuta HOM05D001078 ORTHO05D000927 1.2e-09 68.9 504 26.2
Ah.04g165980 Amaranthus hybridus HOM05D001078 ORTHO05D000927 1.6e-09 68.6 554 23.1
ATR0794G116 Amborella trichopoda HOM05D001078 ORTHO05D000927 2.0e-09 68.2 82 50.0
arahy.Tifrunner.gnm1.ann1.F4DV7V Arachis hypogaea HOM05D001078 ORTHO05D000927 2.0e-09 68.2 338 29.0
Lsat_1_v5_gn_5_3721 Lactuca sativa HOM05D001078 ORTHO05D000927 2.0e-09 68.2 155 38.7
unitig_62.g23287 Utricularia gibba HOM05D001078 ORTHO05D000927 2.0e-09 68.2 502 27.7
EL10Ac4g07787 Beta vulgaris HOM05D001078 ORTHO05D000927 2.7e-09 67.8 177 34.5
PSO832G3726 Papaver somniferum HOM05D001078 ORTHO05D000927 1.0e-08 65.9 598 22.7
PSO541G2226 Papaver somniferum HOM05D001078 ORTHO05D000927 1.3e-08 65.5 501 24.2
AUR62015795 Chenopodium quinoa HOM05D001078 ORTHO05D000927 3.0e-08 64.3 557 21.9
Oeu062585.1 Olea europaea HOM05D001078 ORTHO05D000927 3.0e-08 64.3 54 64.8
MSTRG.15137 Avicennia marina HOM05D001078 ORTHO05D000927 1.1e-07 62.4 508 25.2
Sc16g0005940 Simmondsia chinensis HOM05D001078 ORTHO05D000927 1.1e-07 62.4 268 29.1
Cc00_g18580 Coffea canephora HOM05D001078 ORTHO05D000927 2.5e-07 61.2 37 67.6
Eucgr.F00750 Eucalyptus grandis HOM05D001078 ORTHO05D000927 3.3e-07 60.8 563 22.4
Glyma.14G022600 Glycine max HOM05D001078 ORTHO05D000927 4.3e-07 60.5 116 34.5
Glyma.13G066200 Glycine max HOM05D001078 ORTHO05D000927 3.6e-06 57.4 84 34.5
Hund23234 Selenicereus undatus HOM05D001078 ORTHO05D000927 3.6e-06 57.4 526 23.6
Thecc.03G220300 Theobroma cacao HOM05D001078 ORTHO05D000927 3.6e-06 57.4 36 66.7
SHI26593 Sapria himalayana HOM05D001078 ORTHO05D000927 4.7e-06 57.0 36 63.9
TWI38G1825 Tripterygium wilfordii HOM05D001078 ORTHO05D000927 8.1e-06 56.2 95 35.8


User provided reference genes

Program Settings