Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 1.4e-63 246.1 124 100.0
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 2.7e-51 205.3 119 81.5
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 3.0e-50 201.8 119 81.5
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 6.7e-50 200.7 117 81.2
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 3.3e-49 198.4 127 78.0
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 4.3e-49 198.0 117 81.2
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 5.7e-49 197.6 125 79.2
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 7.4e-49 197.2 130 74.6
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 2.2e-48 195.7 115 80.9
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 2.2e-48 195.7 128 73.4
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 1.1e-47 193.4 117 78.6
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.1e-47 193.4 119 77.3
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.4e-47 193.0 117 78.6
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.4e-47 193.0 127 74.0
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.4e-47 193.0 129 73.6
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 1.8e-47 192.6 127 73.2
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 2.4e-47 192.2 127 73.2
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 3.1e-47 191.8 117 76.9
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 3.1e-47 191.8 117 76.9
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 3.1e-47 191.8 117 76.9
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 3.1e-47 191.8 121 78.5
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 4.1e-47 191.4 127 73.2
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 5.3e-47 191.0 115 78.3
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 6.9e-47 190.7 128 72.7
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 9.0e-47 190.3 117 76.9
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 9.0e-47 190.3 128 73.4
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.5e-46 189.5 128 71.9
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.5e-46 189.5 117 76.1
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 2.0e-46 189.1 117 76.1
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 2.6e-46 188.7 120 75.8
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.7e-46 187.2 122 75.4
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.0e-45 186.8 128 69.5
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 1.3e-45 186.4 115 77.4
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 3.8e-45 184.9 130 72.3
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 6.5e-45 184.1 116 79.3
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.9e-44 182.6 127 72.4
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 1.9e-44 182.6 119 72.3
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.5e-44 182.2 140 66.4
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.5e-44 182.2 140 66.4
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 2.5e-44 182.2 124 71.8
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 4.2e-44 181.4 114 74.6
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 5.5e-44 181.0 119 71.4
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 5.5e-44 181.0 124 71.8
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 7.2e-44 180.6 144 63.9
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 7.2e-44 180.6 144 63.9
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 9.4e-44 180.3 119 73.1
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 9.4e-44 180.3 114 76.3
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.2e-43 179.9 122 69.7
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 2.1e-43 179.1 117 73.5
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 2.7e-43 178.7 117 73.5
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 2.7e-43 178.7 117 74.4
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 3.6e-43 178.3 114 75.4
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 3.6e-43 178.3 125 69.6
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 4.6e-43 177.9 114 76.3
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 7.9e-43 177.2 119 67.2
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 1.0e-42 176.8 126 71.4
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 2.3e-42 175.6 114 74.6
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 2.3e-42 175.6 114 76.3
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 5.1e-42 174.5 121 71.9
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.5e-41 172.9 126 68.3
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 2.0e-41 172.6 113 72.6
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 2.5e-41 172.2 117 70.1
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 5.7e-41 171.0 121 70.2
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 7.4e-41 170.6 120 73.3
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 3.7e-40 168.3 125 67.2
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 6.3e-40 167.5 116 70.7
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 8.2e-40 167.2 133 66.2
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 8.2e-40 167.2 121 68.6
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 2.4e-39 165.6 129 65.9
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 3.1e-39 165.2 132 63.6
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 4.1e-39 164.9 130 65.4
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 4.1e-39 164.9 121 68.6
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 4.1e-39 164.9 117 70.9
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 5.3e-39 164.5 111 72.1
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 5.3e-39 164.5 116 68.1
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 6.9e-39 164.1 119 69.7
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 9.1e-39 163.7 115 67.0
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 9.1e-39 163.7 121 64.5
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 2.6e-38 162.2 118 69.5
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 4.5e-38 161.4 107 71.0
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 2.2e-37 159.1 139 61.2
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.1e-36 156.8 155 54.8
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.4e-36 156.4 121 63.6
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.2e-36 154.8 115 68.7
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 1.2e-35 153.3 116 63.8
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.2e-35 153.3 115 65.2
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.6e-35 152.9 115 68.7
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 7.9e-35 150.6 123 61.8
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.4e-34 149.8 117 65.8
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.8e-34 149.4 133 62.4
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 6.7e-34 147.5 119 59.7
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 6.7e-34 147.5 121 60.3
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 1.1e-33 146.7 119 64.7
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.5e-33 146.4 121 59.5
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.6e-33 145.6 111 66.7
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.3e-33 145.2 174 47.1
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 5.7e-33 144.4 116 62.9
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 7.4e-33 144.1 116 64.7
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 6.3e-32 141.0 118 61.0
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.1e-31 140.2 129 57.4
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.2e-30 136.7 128 54.7
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 2.0e-30 136.0 119 54.6
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 7.7e-30 134.0 116 61.2
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 1.7e-29 132.9 158 47.5
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 2.9e-29 132.1 90 65.6
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 3.8e-29 131.7 119 58.0
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 6.5e-29 131.0 106 61.3
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.1e-28 130.2 85 68.2
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.9e-28 129.4 88 64.8
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 5.5e-28 127.9 101 59.4
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.2e-27 126.7 98 63.3
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.2e-27 126.7 116 56.0
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 4.7e-27 124.8 112 58.0
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.8e-26 122.9 112 57.1
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 1.8e-26 122.9 70 80.0
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 3.0e-26 122.1 116 55.2
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 6.7e-26 120.9 116 55.2
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 1.1e-25 120.2 121 54.5
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 9.7e-25 117.1 84 65.5
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 4.8e-24 114.8 69 75.4
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 5.9e-22 107.8 174 37.9
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 6.5e-21 104.4 70 64.3
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.4e-18 96.7 93 54.8
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 5.7e-17 91.3 83 54.2
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.3e-13 80.1 50 72.0
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 2.9e-13 79.0 66 51.5
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 1.2e-11 73.6 49 65.3
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 8.0e-11 70.9 83 50.6
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 2.0e-09 66.2 48 60.4
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 6.3e-08 61.2 51 60.8
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 8.3e-08 60.8 66 53.0
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 3.5e-06 55.5 50 50.0


User provided reference genes

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