Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 0.0e+00 1842.0 1006 100.0
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 4.3e-280 968.4 1044 56.1
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 7.3e-280 967.6 1053 54.8
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 3.6e-279 965.3 1053 54.7
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 5.4e-275 951.4 1024 54.6
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 6.9e-270 934.5 1018 56.0
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 2.0e-269 932.9 1067 52.7
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 7.6e-269 931.0 1052 53.2
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 7.6e-269 931.0 1053 54.5
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 3.8e-268 928.7 1088 52.9
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 6.4e-268 927.9 1046 52.6
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 2.4e-267 926.0 1026 55.5
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 3.2e-267 925.6 1043 54.4
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 7.9e-266 921.0 1061 54.6
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 1.0e-265 920.6 1037 53.0
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 9.6e-264 914.1 1009 53.4
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 3.7e-263 912.1 1075 51.5
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.9e-262 907.9 1066 53.4
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 9.0e-262 907.5 1080 53.1
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 1.2e-261 907.1 1084 53.3
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 4.5e-261 905.2 1039 55.1
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 7.6e-261 904.4 1041 54.5
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 2.2e-260 902.9 1064 52.3
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 6.5e-260 901.4 1059 52.6
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 8.4e-260 901.0 1059 55.1
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 1.1e-259 900.6 1062 53.8
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 9.3e-259 897.5 1081 53.6
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.3e-257 892.9 867 57.9
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 3.0e-257 892.5 1054 52.0
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.5e-256 889.4 1051 52.0
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 2.5e-256 889.4 1040 53.5
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 3.3e-256 889.0 1089 52.2
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.3e-255 887.1 854 57.1
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.6e-255 886.7 1069 52.5
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.1e-255 886.3 1089 51.4
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 6.2e-255 884.8 1069 51.3
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 3.1e-254 882.5 1046 52.7
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 5.3e-254 881.7 974 52.9
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.5e-253 880.2 1090 50.6
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 7.6e-253 877.9 1033 53.1
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.2e-252 876.3 878 55.0
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.2e-252 876.3 1030 52.3
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 5.0e-252 875.2 1069 51.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 1.1e-251 874.0 1054 53.0
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.4e-251 873.6 1045 52.2
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 2.5e-251 872.8 1045 53.0
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.1e-251 871.3 1026 53.1
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.6e-250 870.2 1056 50.9
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 2.7e-250 869.4 1052 50.9
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 3.5e-250 869.0 1024 53.8
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 4.6e-250 868.6 1039 52.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 1.3e-249 867.1 1072 51.5
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 2.3e-249 866.3 960 54.0
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.5e-248 862.8 1041 52.0
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 4.3e-248 862.1 1101 50.6
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 4.3e-248 862.1 854 57.0
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 9.7e-248 860.9 1086 50.5
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 9.7e-248 860.9 1046 51.2
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 3.7e-247 859.0 1088 49.4
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 4.8e-247 858.6 1039 52.0
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 6.3e-247 858.2 1115 49.6
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.4e-246 857.1 888 53.6
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 3.1e-246 855.9 1023 51.3
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 5.3e-246 855.1 1056 50.3
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 9.0e-246 854.4 1052 51.0
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 7.7e-245 851.3 1113 49.0
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.4e-243 847.0 1048 49.9
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.9e-243 846.7 879 53.4
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.9e-243 846.7 1071 50.9
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 3.2e-243 845.9 1085 48.6
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 9.4e-243 844.3 1058 51.7
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 3.9e-241 839.0 1077 49.9
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 6.7e-241 838.2 887 52.6
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.1e-240 837.4 1043 50.0
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 3.3e-240 835.9 869 53.9
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.2e-239 833.2 1076 50.7
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 6.3e-239 831.6 1043 48.8
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.4e-238 829.7 892 52.1
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 9.1e-238 827.8 1076 50.2
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 2.6e-237 826.2 1052 48.3
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 1.0e-236 824.3 980 50.3
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.7e-236 823.5 1037 51.5
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.9e-236 822.8 1072 48.0
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.8e-236 822.4 1065 48.4
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.4e-233 813.9 1046 50.4
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 8.8e-233 811.2 1046 50.4
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.1e-232 810.8 1082 49.7
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.8e-230 803.5 960 50.1
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 5.3e-230 802.0 1220 44.8
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 9.1e-230 801.2 1065 50.2
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 3.5e-229 799.3 1051 49.5
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 6.5e-228 795.0 1062 48.4
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 1.2e-226 790.8 1049 49.4
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 5.2e-225 785.4 877 51.7
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 8.2e-223 778.1 1046 46.6
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.5e-213 745.7 871 50.6
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.1e-211 741.1 841 54.2
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 4.0e-209 732.6 911 52.0
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 9.5e-203 711.4 1038 47.4
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.5e-189 666.4 633 57.5
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 4.6e-189 666.0 946 43.8
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 6.0e-189 665.6 728 55.9
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 7.3e-187 658.7 829 47.4
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 3.1e-185 653.3 967 42.8
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 6.4e-183 645.6 596 58.1
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.2e-176 624.8 988 45.6
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.2e-170 604.7 619 56.1
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 1.5e-163 581.3 1022 43.1
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 9.0e-153 545.4 567 54.0
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.5e-144 518.1 646 48.6
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.7e-143 514.6 1041 35.8
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.5e-142 510.8 883 40.1
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 3.0e-140 503.8 517 58.0
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 4.8e-138 496.5 741 43.9
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 2.9e-135 487.3 611 51.9
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 9.3e-134 482.3 841 37.7
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 2.4e-105 387.9 359 58.5
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.0e-103 382.5 1104 30.9
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.6e-101 374.0 352 57.7
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.8e-89 335.1 596 39.1
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.8e-76 292.0 694 33.1
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.2e-73 281.2 299 52.5
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.1e-70 272.7 560 42.3
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 3.4e-67 261.2 641 33.2
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.1e-56 225.3 216 58.8
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 2.4e-49 201.8 252 51.2
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.6e-45 189.1 189 57.7
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.8e-37 161.0 226 43.8
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 3.8e-34 151.4 269 51.7
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 3.0e-31 141.7 166 47.6
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 2.6e-27 128.6 167 47.3
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.6e-24 119.4 114 54.4
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 4.6e-24 117.9 91 60.4
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 7.9e-24 117.1 132 53.0
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.3e-13 83.2 62 66.1
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 2.8e-13 82.0 235 39.6
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.7e-13 81.6 82 50.0
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 2.4e-12 79.0 75 56.0
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 5.3e-12 77.8 228 40.4
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 7.9e-08 63.9 231 37.2
Zm00001eb363000 Zea mays HOM05D001561 ORTHO05D002967 6.7e-07 60.8 36 63.9
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 4.4e-06 58.2 584 22.9


User provided reference genes

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