Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_014013 Vanilla planifolia HOM05D005010 ORTHO05D006065 7.1e-74 280.4 132 100.0
HPP92_013926 Vanilla planifolia HOM05D005010 ORTHO05D006065 4.6e-33 144.8 67 95.5
Dinv32470 Davidia involucrata HOM05D005010 ORTHO05D006065 3.4e-20 102.1 61 75.4
HPP92_014015 Vanilla planifolia HOM05D005010 ORTHO05D006065 1.0e-19 100.5 53 84.9
TAR629G1525 Trochodendron aralioides HOM05D005010 ORTHO05D006065 1.3e-19 100.1 64 73.4
Rhsim11G0072000 Rhododendron simsii HOM05D005010 ORTHO05D006065 2.9e-19 99.0 60 71.7
TAR629G2224 Trochodendron aralioides HOM05D005010 ORTHO05D006065 3.8e-19 98.6 64 73.4
Cfa003937 Carpinus fangiana HOM05D005010 ORTHO05D006065 5.0e-19 98.2 59 74.6
Gohir.A08G032600 Gossypium hirsutum HOM05D005010 ORTHO05D006065 8.5e-19 97.4 55 76.4
Haze_15489 Corylus avellana HOM05D005010 ORTHO05D006065 1.1e-18 97.1 59 72.9
Rhsim07G0016300 Rhododendron simsii HOM05D005010 ORTHO05D006065 1.1e-18 97.1 60 70.0
arahy.Tifrunner.gnm1.ann1.99Z3M1 Arachis hypogaea HOM05D005010 ORTHO05D006065 2.5e-18 95.9 52 80.8
arahy.Tifrunner.gnm1.ann1.L7E1K8 Arachis hypogaea HOM05D005010 ORTHO05D006065 2.5e-18 95.9 52 80.8
Lalb_Chr17g0339751 Lupinus albus HOM05D005010 ORTHO05D006065 2.5e-18 95.9 55 74.5
Duzib138G0257 Durio zibethinus HOM05D005010 ORTHO05D006065 3.2e-18 95.5 55 76.4
Gorai.004G042100 Gossypium raimondii HOM05D005010 ORTHO05D006065 3.2e-18 95.5 55 74.5
Manes.05G035400 Manihot esculenta HOM05D005010 ORTHO05D006065 3.2e-18 95.5 55 78.2
Solyc01g094500.3 Solanum lycopersicum HOM05D005010 ORTHO05D006065 3.2e-18 95.5 59 69.5
Sopen01g038310 Solanum pennellii HOM05D005010 ORTHO05D006065 3.2e-18 95.5 59 69.5
MSTRG.17259 Avicennia marina HOM05D005010 ORTHO05D006065 4.2e-18 95.1 55 74.5
Glyma.03G010700 Glycine max HOM05D005010 ORTHO05D006065 4.2e-18 95.1 52 76.9
Prupe.2G112100 Prunus persica HOM05D005010 ORTHO05D006065 4.2e-18 95.1 55 76.4
Sabra14G0060200 Salix brachista HOM05D005010 ORTHO05D006065 4.2e-18 95.1 59 74.6
FvH4_7g08470 Fragaria vesca HOM05D005010 ORTHO05D006065 5.5e-18 94.7 55 76.4
FAN01G2345 Fragaria x ananassa HOM05D005010 ORTHO05D006065 5.5e-18 94.7 55 76.4
FAN06G0276 Fragaria x ananassa HOM05D005010 ORTHO05D006065 5.5e-18 94.7 55 76.4
RcHm_v2.0_Chr1g0343231 Rosa chinensis HOM05D005010 ORTHO05D006065 5.5e-18 94.7 55 76.4
Cpa.g.c27491.2 Carica papaya HOM05D005010 ORTHO05D006065 7.2e-18 94.4 61 68.9
FAN03G3376 Fragaria x ananassa HOM05D005010 ORTHO05D006065 7.2e-18 94.4 55 76.4
FAN26G0391 Fragaria x ananassa HOM05D005010 ORTHO05D006065 7.2e-18 94.4 55 74.5
PGSC0003DMG400000164 Solanum tuberosum HOM05D005010 ORTHO05D006065 7.2e-18 94.4 59 69.5
vmacro13278 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 7.2e-18 94.4 55 74.5
Atru.chr5.463 Acer truncatum HOM05D005010 ORTHO05D006065 9.4e-18 94.0 52 80.8
arahy.Tifrunner.gnm1.ann1.MH5UBF Arachis hypogaea HOM05D005010 ORTHO05D006065 9.4e-18 94.0 51 78.4
CiPaw.01G060000 Carya illinoinensis HOM05D005010 ORTHO05D006065 9.4e-18 94.0 52 80.8
Glyma.07G071800 Glycine max HOM05D005010 ORTHO05D006065 9.4e-18 94.0 52 75.0
Lsat_1_v5_gn_4_36200 Lactuca sativa HOM05D005010 ORTHO05D006065 9.4e-18 94.0 52 78.8
Lj4g0008215 Lotus japonicus HOM05D005010 ORTHO05D006065 9.4e-18 94.0 62 66.1
Potri.002G158800 Populus trichocarpa HOM05D005010 ORTHO05D006065 9.4e-18 94.0 52 80.8
MD07G1084500 Malus domestica HOM05D005010 ORTHO05D006065 1.2e-17 93.6 52 78.8
Peaxi162Scf00020g00235 Petunia axillaris HOM05D005010 ORTHO05D006065 1.2e-17 93.6 55 74.5
arahy.Tifrunner.gnm1.ann1.23H0YW Arachis hypogaea HOM05D005010 ORTHO05D006065 1.6e-17 93.2 51 78.4
ECA234G3587 Erigeron canadensis HOM05D005010 ORTHO05D006065 1.6e-17 93.2 52 76.9
QL08p049016 Quercus lobata HOM05D005010 ORTHO05D006065 1.6e-17 93.2 55 76.4
MD02G1227800 Malus domestica HOM05D005010 ORTHO05D006065 2.1e-17 92.8 55 74.5
Sc23g0002970 Simmondsia chinensis HOM05D005010 ORTHO05D006065 2.1e-17 92.8 55 70.9
Actinidia10021 Actinidia chinensis HOM05D005010 ORTHO05D006065 2.7e-17 92.4 57 77.2
Thecc.01G360400 Theobroma cacao HOM05D005010 ORTHO05D006065 3.6e-17 92.0 55 74.5
ATR0680G350 Amborella trichopoda HOM05D005010 ORTHO05D006065 4.7e-17 91.7 52 76.9
FAN03G2591 Fragaria x ananassa HOM05D005010 ORTHO05D006065 4.7e-17 91.7 55 74.5
FAN03G3310 Fragaria x ananassa HOM05D005010 ORTHO05D006065 4.7e-17 91.7 55 74.5
HanXRQChr16g0522801 Helianthus annuus HOM05D005010 ORTHO05D006065 4.7e-17 91.7 52 78.8
Ciclev10020258m.g Citrus clementina HOM05D005010 ORTHO05D006065 6.1e-17 91.3 52 76.9
Nitab4.5_0007225g0010 Nicotiana tabacum HOM05D005010 ORTHO05D006065 6.1e-17 91.3 52 76.9
Aqoxy7G00336 Aquilegia oxysepala HOM05D005010 ORTHO05D006065 8.0e-17 90.9 52 76.9
CSS0001208 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 8.0e-17 90.9 65 64.6
CSS0029232 Camellia sinensis var. sinensis HOM05D005010 ORTHO05D006065 8.0e-17 90.9 65 64.6
Lj9C582G27 Lonicera japonica HOM05D005010 ORTHO05D006065 8.0e-17 90.9 52 73.1
MBI18_g42176_MAGBIO Magnolia biondii HOM05D005010 ORTHO05D006065 8.0e-17 90.9 62 67.7
THA.LOC104812937 Tarenaya hassleriana HOM05D005010 ORTHO05D006065 8.0e-17 90.9 59 71.2
unitig_749.g13796 Utricularia gibba HOM05D005010 ORTHO05D006065 8.0e-17 90.9 55 69.1
Actinidia20915 Actinidia chinensis HOM05D005010 ORTHO05D006065 1.0e-16 90.5 63 68.3
Migut.B01743 Erythranthe guttata HOM05D005010 ORTHO05D006065 1.0e-16 90.5 55 70.9
FAN19G0035 Fragaria x ananassa HOM05D005010 ORTHO05D006065 1.0e-16 90.5 55 72.7
Oeu034880.2 Olea europaea HOM05D005010 ORTHO05D006065 1.0e-16 90.5 55 69.1
Duzib268G0644 Durio zibethinus HOM05D005010 ORTHO05D006065 1.4e-16 90.1 52 76.9
Oeu058611.3 Olea europaea HOM05D005010 ORTHO05D006065 1.4e-16 90.1 55 70.9
SalBow6G7245 Salvia bowleyana HOM05D005010 ORTHO05D006065 1.4e-16 90.1 55 72.7
CANSAT21G0157 Cannabis sativa HOM05D005010 ORTHO05D006065 1.8e-16 89.7 52 73.1
CAN.G78.54 Capsicum annuum HOM05D005010 ORTHO05D006065 3.0e-16 89.0 59 66.1
Cc02_g37880 Coffea canephora HOM05D005010 ORTHO05D006065 3.0e-16 89.0 65 64.6
COL.COLO4_12702 Corchorus olitorius HOM05D005010 ORTHO05D006065 3.9e-16 88.6 55 67.3
FAN28G0697 Fragaria x ananassa HOM05D005010 ORTHO05D006065 3.9e-16 88.6 59 67.8
RcHm_v2.0_Chr2g0122991 Rosa chinensis HOM05D005010 ORTHO05D006065 3.9e-16 88.6 55 70.9
Sp7g19030 Schrenkiella parvula HOM05D005010 ORTHO05D006065 3.9e-16 88.6 52 73.1
TPR.G14634 Trifolium pratense HOM05D005010 ORTHO05D006065 3.9e-16 88.6 55 65.5
AL7G33190 Arabidopsis lyrata HOM05D005010 ORTHO05D006065 5.2e-16 88.2 54 68.5
AT4G20960 Arabidopsis thaliana HOM05D005010 ORTHO05D006065 5.2e-16 88.2 54 68.5
Eucgr.D02284 Eucalyptus grandis HOM05D005010 ORTHO05D006065 5.2e-16 88.2 52 75.0
Thhalv10025283m.g Eutrema salsugineum HOM05D005010 ORTHO05D006065 5.2e-16 88.2 52 73.1
Nn2g11699 Nelumbo nucifera HOM05D005010 ORTHO05D006065 5.2e-16 88.2 63 65.1
Phvul.010G097500 Phaseolus vulgaris HOM05D005010 ORTHO05D006065 6.7e-16 87.8 51 70.6
SalBow1G2229 Salvia bowleyana HOM05D005010 ORTHO05D006065 6.7e-16 87.8 55 70.9
BcaB03g11707 Brassica carinata HOM05D005010 ORTHO05D006065 8.8e-16 87.4 52 73.1
BcaC01g00726 Brassica carinata HOM05D005010 ORTHO05D006065 8.8e-16 87.4 52 73.1
FvH4_1g22161 Fragaria vesca HOM05D005010 ORTHO05D006065 8.8e-16 87.4 55 70.9
PGR031G1307 Punica granatum HOM05D005010 ORTHO05D006065 8.8e-16 87.4 52 73.1
Hund16928 Selenicereus undatus HOM05D005010 ORTHO05D006065 1.1e-15 87.0 52 69.2
Carub.0007s2048 Capsella rubella HOM05D005010 ORTHO05D006065 1.5e-15 86.7 54 70.4
VMungo0331G1782 Vigna mungo HOM05D005010 ORTHO05D006065 1.5e-15 86.7 51 72.5
BcaC01g00732 Brassica carinata HOM05D005010 ORTHO05D006065 2.0e-15 86.3 55 67.3
BolC3t20645H Brassica oleracea HOM05D005010 ORTHO05D006065 2.0e-15 86.3 55 67.3
Zm00001eb001180 Zea mays HOM05D005010 ORTHO05D006065 2.0e-15 86.3 53 69.8
C03p83660 Brassica napus HOM05D005010 ORTHO05D006065 2.6e-15 85.9 55 67.3
Os03g0117200 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 3.3e-15 85.5 51 72.5
ClCG06G003790 Citrullus lanatus HOM05D005010 ORTHO05D006065 4.4e-15 85.1 53 73.6
CsaV3_6G000480 Cucumis sativus L. HOM05D005010 ORTHO05D006065 4.4e-15 85.1 53 73.6
CARHR227510 Cardamine hirsuta HOM05D005010 ORTHO05D006065 5.7e-15 84.7 52 69.2
Psat4g028280 Pisum sativum HOM05D005010 ORTHO05D006065 5.7e-15 84.7 52 67.3
TWI14G0418 Tripterygium wilfordii HOM05D005010 ORTHO05D006065 5.7e-15 84.7 51 72.5
A08p15390 Brassica napus HOM05D005010 ORTHO05D006065 9.7e-15 84.0 52 69.2
BraA08t33517Z Brassica rapa HOM05D005010 ORTHO05D006065 9.7e-15 84.0 52 69.2
Aa31LG6G3020 Aethionema arabicum HOM05D005010 ORTHO05D006065 1.3e-14 83.6 52 71.2
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 1.3e-14 83.6 52 65.4
MELO3C021216.2 Cucumis melo HOM05D005010 ORTHO05D006065 1.3e-14 83.6 52 73.1
PSO782G1000 Papaver somniferum HOM05D005010 ORTHO05D006065 1.3e-14 83.6 59 62.7
SGA_v2.0_scaffold4G02331 Striga asiatica HOM05D005010 ORTHO05D006065 1.7e-14 83.2 51 70.6
Nitab4.5_0007690g0020 Nicotiana tabacum HOM05D005010 ORTHO05D006065 3.7e-14 82.0 52 69.2
EL10Ac1g00427 Beta vulgaris HOM05D005010 ORTHO05D006065 4.8e-14 81.6 59 61.0
BcaB06g27372 Brassica carinata HOM05D005010 ORTHO05D006065 4.8e-14 81.6 52 67.3
Medtr4g119220 Medicago truncatula HOM05D005010 ORTHO05D006065 6.3e-14 81.3 52 65.4
AUR62004345 Chenopodium quinoa HOM05D005010 ORTHO05D006065 8.2e-14 80.9 52 67.3
DCAR_006924 Daucus carota HOM05D005010 ORTHO05D006065 8.2e-14 80.9 52 67.3
Os04g0177400 Oryza sativa ssp. japonica HOM05D005010 ORTHO05D006065 8.2e-14 80.9 52 67.3
AUR62022551 Chenopodium quinoa HOM05D005010 ORTHO05D006065 1.1e-13 80.5 52 65.4
Ah.05g180680 Amaranthus hybridus HOM05D005010 ORTHO05D006065 1.4e-13 80.1 52 63.5
GSVIVG01026897001 Vitis vinifera HOM05D005010 ORTHO05D006065 1.8e-13 79.7 46 76.1
Pp3c7_11900 Physcomitrium patens HOM05D005010 ORTHO05D006065 2.4e-13 79.3 51 66.7
Sed0013033 Sechium edule HOM05D005010 ORTHO05D006065 2.4e-13 79.3 51 70.6
AagrBONN_evm.TU.Sc2ySwM_228.296 Anthoceros agrestis HOM05D005010 ORTHO05D006065 4.1e-13 78.6 51 64.7
Mapoly0008s0021 Marchantia polymorpha HOM05D005010 ORTHO05D006065 5.3e-13 78.2 51 68.6
SEGI_16261 Sequoiadendron giganteum HOM05D005010 ORTHO05D006065 5.3e-13 78.2 52 63.5
Lalb_Chr04g0256911 Lupinus albus HOM05D005010 ORTHO05D006065 7.0e-13 77.8 57 56.1
CBR_g12386 Chara braunii HOM05D005010 ORTHO05D006065 4.5e-12 75.1 52 57.7
BraA03t14331Z Brassica rapa HOM05D005010 ORTHO05D006065 1.0e-11 73.9 45 68.9
SMO119G0342 Selaginella moellendorffii HOM05D005010 ORTHO05D006065 1.3e-11 73.6 57 57.9
Eucgr.D00187 Eucalyptus grandis HOM05D005010 ORTHO05D006065 1.7e-11 73.2 46 71.7
BcaNung05416 Brassica carinata HOM05D005010 ORTHO05D006065 5.0e-11 71.6 46 65.2
BolC7t45602H Brassica oleracea HOM05D005010 ORTHO05D006065 5.0e-11 71.6 46 65.2
vmacro14577 Vaccinium macrocarpon HOM05D005010 ORTHO05D006065 1.5e-10 70.1 55 61.8
C07p51010 Brassica napus HOM05D005010 ORTHO05D006065 2.5e-10 69.3 46 63.0
Ciclev10013015m.g Citrus clementina HOM05D005010 ORTHO05D006065 3.2e-10 68.9 43 72.1
A03p52560 Brassica napus HOM05D005010 ORTHO05D006065 8.0e-09 64.3 42 64.3
PRCOL_00002917 Prasinoderma coloniale HOM05D005010 ORTHO05D006065 2.3e-08 62.8 60 48.3
Potri.014G083000 Populus trichocarpa HOM05D005010 ORTHO05D006065 4.4e-07 58.5 41 65.9
Ah.09g225570 Amaranthus hybridus HOM05D005010 ORTHO05D006065 9.7e-07 57.4 36 63.9
MCO15G184 Micromonas commoda HOM05D005010 ORTHO05D006065 2.2e-06 56.2 48 58.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 6.3e-06 54.7 55 49.1


User provided reference genes

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