Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013812 Vanilla planifolia HOM05D007506 ORTHO05D008409 1.1e-24 116.3 85 100.0
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 1.1e-08 63.2 56 57.1
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 1.5e-08 62.8 56 57.1
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 5.7e-08 60.8 49 61.2
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 7.4e-08 60.5 47 66.0
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 9.7e-08 60.1 49 59.2
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 1.7e-07 59.3 32 81.2
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 2.2e-07 58.9 52 57.7
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 2.8e-07 58.5 57 50.9
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 2.8e-07 58.5 32 84.4
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 2.8e-07 58.5 33 84.8
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 3.7e-07 58.2 32 81.2
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 3.7e-07 58.2 56 50.0
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 6.3e-07 57.4 51 58.8
Os08g0558900 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 6.3e-07 57.4 46 63.0
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 6.3e-07 57.4 31 83.9
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 8.2e-07 57.0 49 61.2
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 8.2e-07 57.0 48 60.4
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 1.1e-06 56.6 29 89.7
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 1.1e-06 56.6 54 55.6
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 1.1e-06 56.6 54 55.6
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 1.1e-06 56.6 47 59.6
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 1.4e-06 56.2 29 86.2
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 1.4e-06 56.2 44 65.9
Peaxi162Scf00125g00216 Petunia axillaris HOM05D007506 ORTHO05D008409 1.4e-06 56.2 49 59.2
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 1.4e-06 56.2 48 58.3
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 1.4e-06 56.2 61 52.5
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 1.8e-06 55.8 52 61.5
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.8e-06 55.8 51 56.9
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 1.8e-06 55.8 32 75.0
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 2.4e-06 55.5 32 71.9
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 2.4e-06 55.5 30 83.3
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 2.4e-06 55.5 30 83.3
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 3.1e-06 55.1 48 62.5
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 3.1e-06 55.1 41 56.1
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 3.1e-06 55.1 41 56.1
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 3.1e-06 55.1 41 56.1
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 3.1e-06 55.1 41 56.1
PGSC0003DMG400023979 Solanum tuberosum HOM05D007506 ORTHO05D008409 3.1e-06 55.1 48 56.2
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 3.1e-06 55.1 48 62.5
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 4.1e-06 54.7 31 77.4
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 4.1e-06 54.7 57 54.4
Os02g0533800 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 5.3e-06 54.3 32 75.0
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 5.3e-06 54.3 51 54.9
CiPaw.13G041100 Carya illinoinensis HOM05D007506 ORTHO05D008409 6.9e-06 53.9 30 80.0
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 6.9e-06 53.9 55 49.1
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 6.9e-06 53.9 30 80.0
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 9.1e-06 53.5 32 71.9
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 9.1e-06 53.5 59 57.6
CAN.G1373.1 Capsicum annuum HOM05D007506 ORTHO05D008409 9.1e-06 53.5 49 55.1


User provided reference genes

Program Settings