Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013791 Vanilla planifolia HOM05D000088 ORTHO05D430187 5.3e-86 320.9 148 100.0
Aqoxy4G02386 Aquilegia oxysepala HOM05D000088 ORTHO05D001217 4.4e-08 62.0 75 48.0
Peaxi162Scf00732g00340 Petunia axillaris HOM05D000088 ORTHO05D001217 5.8e-08 61.6 89 41.6
Rhsim05G0229900 Rhododendron simsii HOM05D000619 ORTHO05D002839 5.8e-08 61.6 68 48.5
vmacro20364 Vaccinium macrocarpon HOM05D000088 ORTHO05D001217 5.8e-08 61.6 63 52.4
HPP92_013833 Vanilla planifolia HOM05D000088 ORTHO05D001217 5.8e-08 61.6 41 68.3
Zm00001eb062230 Zea mays HOM05D000088 ORTHO05D001217 5.8e-08 61.6 41 68.3
Os03g0816100 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D001217 9.9e-08 60.8 41 65.9
Gorai.006G234800 Gossypium raimondii HOM05D000088 ORTHO05D001217 1.3e-07 60.5 41 65.9
Solyc09g018060.4 Solanum lycopersicum HOM05D000088 ORTHO05D001217 1.3e-07 60.5 41 65.9
Sopen09g010510 Solanum pennellii HOM05D000088 ORTHO05D001217 1.3e-07 60.5 41 65.9
ECA247G2932 Erigeron canadensis HOM05D000088 ORTHO05D001217 1.7e-07 60.1 41 65.9
HanXRQChr15g0463201 Helianthus annuus HOM05D000088 ORTHO05D001217 1.7e-07 60.1 41 65.9
Lsat_1_v5_gn_9_37801 Lactuca sativa HOM05D000088 ORTHO05D001217 1.7e-07 60.1 41 65.9
TAR369G0883 Trochodendron aralioides HOM05D000088 ORTHO05D001217 1.7e-07 60.1 41 65.9
TAR623G0012 Trochodendron aralioides HOM05D000088 ORTHO05D001217 1.7e-07 60.1 41 65.9
TAR623G0737 Trochodendron aralioides HOM05D000088 ORTHO05D001217 1.7e-07 60.1 41 65.9
Atru.chr8.2389 Acer truncatum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Actinidia32562 Actinidia chinensis HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Aa31LG5G11540 Aethionema arabicum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
AL6G10180 Arabidopsis lyrata HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
AT5G01850 Arabidopsis thaliana HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
arahy.Tifrunner.gnm1.ann1.9X741C Arachis hypogaea HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
arahy.Tifrunner.gnm1.ann1.SFYS5E Arachis hypogaea HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
MSTRG.5509 Avicennia marina HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
EL10Ac7g17077 Beta vulgaris HOM05D000088 ORTHO05D001217 2.2e-07 59.7 40 65.0
BcaB05g21906 Brassica carinata HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
BcaC03g13105 Brassica carinata HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
BNapus_Darmor_BZH_scaffold_209p00080 Brassica napus HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
BolC2t05985H Brassica oleracea HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
BraA02t04675Z Brassica rapa HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
CSS0034896 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
CANSAT35G0399 Cannabis sativa HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
CARHR212200 Cardamine hirsuta HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Cfa017047 Carpinus fangiana HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
CiPaw.09G220200 Carya illinoinensis HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Ca_07757_v3 Cicer arietinum L. HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
ClCG10G022660 Citrullus lanatus HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
COL.COLO4_16537 Corchorus olitorius HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Haze_21164 Corylus avellana HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
MELO3C009110.2 Cucumis melo HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
CsaV3_3G033170 Cucumis sativus L. HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
DCAR_023977 Daucus carota HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Dinv11370 Davidia involucrata HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Duzib151G1093 Durio zibethinus HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Duzib212G0430 Durio zibethinus HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Migut.J00052 Erythranthe guttata HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Eucgr.K01281 Eucalyptus grandis HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
FvH4_6g10040 Fragaria vesca HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
FAN05G1813 Fragaria x ananassa HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
FAN05G1923 Fragaria x ananassa HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
FAN09G2241 Fragaria x ananassa HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
FAN14G2583 Fragaria x ananassa HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Glyma.03G036000 Glycine max HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Glyma.09G275900 Glycine max HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Gohir.A02G003900 Gossypium hirsutum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Gohir.A09G213648 Gossypium hirsutum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Gohir.D02G004300 Gossypium hirsutum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Gohir.D09G214400 Gossypium hirsutum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Gorai.005G004900 Gossypium raimondii HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Hma1.2p1_1052F.1_g252280 Hydrangea macrophylla HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Lj1g0018926 Lotus japonicus HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Lalb_Chr01g0023701 Lupinus albus HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
MBI03_g42979_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
MD04G1173100 Malus domestica HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
MD12G1186500 Malus domestica HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Manes.08G172200 Manihot esculenta HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Manes.09G117100 Manihot esculenta HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Medtr7g072710 Medicago truncatula HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Nn5g26865 Nelumbo nucifera HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Nitab4.5_0000046g0150 Nicotiana tabacum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Nitab4.5_0010966g0010 Nicotiana tabacum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 2.2e-07 59.7 41 65.9
Oeu060434.1 Olea europaea HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
PSO017G0620 Papaver somniferum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
PSO170G2674 Papaver somniferum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Phvul.010G068300 Phaseolus vulgaris HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Psat3g120400 Pisum sativum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Potri.016G134900 Populus trichocarpa HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Prupe.6G292000 Prunus persica HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
PGR004G2904 Punica granatum HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
QL07p032425 Quercus lobata HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
RcHm_v2.0_Chr3g0460721 Rosa chinensis HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Sabra04G0152300 Salix brachista HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Sp6g41090 Schrenkiella parvula HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Sed0018298 Sechium edule HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Hund19780 Selenicereus undatus HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
SGA_v2.0_scaffold85G26633 Striga asiatica HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
THA.LOC104827070 Tarenaya hassleriana HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
Thecc.04G153100 Theobroma cacao HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
TPR.G26949 Trifolium pratense HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
TWI53G1203 Tripterygium wilfordii HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
TWI77G0826 Tripterygium wilfordii HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
TAR636G2806 Trochodendron aralioides HOM05D000088 ORTHO05D029931 2.2e-07 59.7 31 80.6
VMungo0331G1924 Vigna mungo HOM05D000088 ORTHO05D001217 2.2e-07 59.7 41 65.9
CAN.G110.4 Capsicum annuum HOM05D000088 ORTHO05D001217 2.9e-07 59.3 41 63.4
Glyma.01G132300 Glycine max HOM05D000088 ORTHO05D001217 2.9e-07 59.3 41 65.9
Lalb_Chr03g0043721 Lupinus albus HOM05D000088 ORTHO05D001217 2.9e-07 59.3 41 63.4
Phvul.008G083700 Phaseolus vulgaris HOM05D000088 ORTHO05D001217 2.9e-07 59.3 41 63.4
VMungo1383G0292 Vigna mungo HOM05D000088 ORTHO05D001217 2.9e-07 59.3 41 63.4
CDE04G3311 Ceratophyllum demersum HOM05D000088 ORTHO05D001217 3.8e-07 58.9 41 65.9
CDE12G0572 Ceratophyllum demersum HOM05D000088 ORTHO05D001217 3.8e-07 58.9 41 65.9
Ah.08g209580 Amaranthus hybridus HOM05D000088 ORTHO05D001217 4.9e-07 58.5 41 61.0
CSS0049332 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D001217 4.9e-07 58.5 41 63.4
AUR62029712 Chenopodium quinoa HOM05D000088 ORTHO05D001217 4.9e-07 58.5 41 63.4
Ciclev10011970m.g Citrus clementina HOM05D000088 ORTHO05D001217 4.9e-07 58.5 41 63.4
Mapoly0187s0006 Marchantia polymorpha HOM05D000088 ORTHO05D001217 4.9e-07 58.5 71 45.1
Sed0023923 Sechium edule HOM05D000709 ORTHO05D002401 4.9e-07 58.5 71 40.8
Hund03718 Selenicereus undatus HOM05D000088 ORTHO05D001217 4.9e-07 58.5 41 63.4
AUR62006378 Chenopodium quinoa HOM05D000088 ORTHO05D001217 6.4e-07 58.2 40 65.0
Cc06_g00450 Coffea canephora HOM05D000088 ORTHO05D001217 6.4e-07 58.2 41 63.4
Lj2C60G8 Lonicera japonica HOM05D000088 ORTHO05D001217 6.4e-07 58.2 41 63.4
Nn2g10327 Nelumbo nucifera HOM05D000088 ORTHO05D001217 6.4e-07 58.2 41 63.4
Pp3c15_16340 Physcomitrium patens HOM05D000088 ORTHO05D001217 6.4e-07 58.2 71 45.1
Pp3c9_16610 Physcomitrium patens HOM05D000088 ORTHO05D001217 6.4e-07 58.2 71 45.1
Sc02g0000230 Simmondsia chinensis HOM05D000088 ORTHO05D001217 6.4e-07 58.2 41 63.4
GSVIVG01030194001 Vitis vinifera HOM05D000088 ORTHO05D001217 6.4e-07 58.2 41 63.4
Os02g0594100 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D001217 1.1e-06 57.4 71 43.7
TAR633G0625 Trochodendron aralioides HOM05D000088 ORTHO05D001217 1.1e-06 57.4 41 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3637 Anthoceros agrestis HOM05D000088 ORTHO05D001217 1.4e-06 57.0 71 43.7
Cfa004278 Carpinus fangiana HOM05D000088 ORTHO05D001217 1.4e-06 57.0 61 45.9
Ciclev10015773m.g Citrus clementina HOM05D000088 ORTHO05D001217 1.4e-06 57.0 41 61.0
SEGI_03663 Sequoiadendron giganteum HOM05D000088 ORTHO05D001217 1.4e-06 57.0 41 63.4
Haze_15123 Corylus avellana HOM05D000088 ORTHO05D001217 1.9e-06 56.6 61 45.9
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 1.9e-06 56.6 63 46.0
Oeu063852.1 Olea europaea HOM05D000088 ORTHO05D001217 1.9e-06 56.6 41 58.5
VMungo1383G2139 Vigna mungo HOM05D000088 ORTHO05D001217 1.9e-06 56.6 68 44.1
CDE07G0248 Ceratophyllum demersum HOM05D000088 ORTHO05D001217 2.4e-06 56.2 62 48.4
Dinv25333 Davidia involucrata HOM05D000088 ORTHO05D001217 2.4e-06 56.2 39 64.1
Oeu018145.1 Olea europaea HOM05D000088 ORTHO05D001217 2.4e-06 56.2 68 42.6
Oeu018146.1 Olea europaea HOM05D000088 ORTHO05D001217 2.4e-06 56.2 68 42.6
HPP92_006180 Vanilla planifolia HOM05D000088 ORTHO05D001217 2.4e-06 56.2 71 42.3
Zm00001eb183610 Zea mays HOM05D000088 ORTHO05D001217 2.4e-06 56.2 71 42.3
SEGI_17624 Sequoiadendron giganteum HOM05D000088 ORTHO05D001217 3.2e-06 55.8 71 42.3
GSVIVG01007646001 Vitis vinifera HOM05D000088 ORTHO05D001217 3.2e-06 55.8 71 40.8
ATR0824G273 Amborella trichopoda HOM05D000088 ORTHO05D001217 4.2e-06 55.5 71 42.3
Ciclev10025821m.g Citrus clementina HOM05D000088 ORTHO05D001217 4.2e-06 55.5 99 34.3
Aqoxy3G01227 Aquilegia oxysepala HOM05D000088 ORTHO05D001217 5.4e-06 55.1 71 40.8
Aqoxy5G03752 Aquilegia oxysepala HOM05D000088 ORTHO05D001217 5.4e-06 55.1 71 40.8
CsaV3_5G027080 Cucumis sativus L. HOM05D000088 ORTHO05D001217 5.4e-06 55.1 41 56.1
Duzib068G0211 Durio zibethinus HOM05D000088 ORTHO05D001217 5.4e-06 55.1 69 42.0
SMO348G0044 Selaginella moellendorffii HOM05D000088 ORTHO05D001217 5.4e-06 55.1 41 61.0
MBI16_g26983_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D001217 7.1e-06 54.7 66 40.9
Nn4g22601 Nelumbo nucifera HOM05D000088 ORTHO05D001217 7.1e-06 54.7 71 40.8
HPP92_020247 Vanilla planifolia HOM05D000088 ORTHO05D001217 7.1e-06 54.7 69 42.0
BcaB01g02913 Brassica carinata HOM05D000088 ORTHO05D001217 9.2e-06 54.3 41 56.1
BcaC01g04826 Brassica carinata HOM05D000088 ORTHO05D001217 9.2e-06 54.3 41 56.1
A03p27700 Brassica napus HOM05D000088 ORTHO05D001217 9.2e-06 54.3 41 56.1
C03p33410 Brassica napus HOM05D000088 ORTHO05D001217 9.2e-06 54.3 41 56.1
BolC3t15663H Brassica oleracea HOM05D000088 ORTHO05D001217 9.2e-06 54.3 41 56.1
BraA03t11982Z Brassica rapa HOM05D000088 ORTHO05D001217 9.2e-06 54.3 41 56.1
CDE04G3350 Ceratophyllum demersum HOM05D000088 ORTHO05D001217 9.2e-06 54.3 41 61.0
ClCG09G019310 Citrullus lanatus HOM05D000088 ORTHO05D001217 9.2e-06 54.3 41 56.1
MELO3C021586.2 Cucumis melo HOM05D000088 ORTHO05D001217 9.2e-06 54.3 41 56.1
Duzib187G0548 Durio zibethinus HOM05D000088 ORTHO05D001217 9.2e-06 54.3 69 40.6
Nitab4.5_0009627g0010 Nicotiana tabacum HOM05D000088 ORTHO05D001217 9.2e-06 54.3 68 41.2


User provided reference genes

Program Settings