Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 1.4e-212 742.7 364 100.0
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 1.5e-86 323.9 415 42.2
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 5.8e-86 322.0 427 42.9
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 1.4e-84 317.4 429 41.5
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 1.9e-84 317.0 408 42.9
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 7.9e-83 311.6 463 40.0
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.0e-82 311.2 414 42.5
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 1.8e-82 310.5 416 42.5
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 2.3e-82 310.1 475 38.1
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 3.9e-82 309.3 430 41.4
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.9e-81 307.0 418 41.9
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.5e-81 306.6 402 42.8
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 4.3e-81 305.8 429 41.5
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.1e-79 299.7 402 40.8
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 5.3e-79 298.9 430 40.5
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 6.9e-79 298.5 434 41.5
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 9.0e-79 298.1 432 39.4
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 2.0e-78 297.0 416 41.6
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 4.5e-78 295.8 372 44.1
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 4.5e-78 295.8 426 41.5
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 1.0e-77 294.7 419 39.9
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 1.7e-77 293.9 436 40.6
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 2.9e-77 293.1 422 40.3
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 3.8e-77 292.7 419 39.4
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 5.0e-77 292.4 391 41.4
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 1.1e-76 291.2 376 41.0
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 3.2e-76 289.7 375 41.9
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 3.2e-76 289.7 427 38.4
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 5.5e-76 288.9 404 39.9
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 7.2e-76 288.5 421 39.4
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 7.2e-76 288.5 426 38.3
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 9.4e-76 288.1 415 40.5
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 3.6e-75 286.2 425 39.8
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 4.6e-75 285.8 418 39.7
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 4.6e-75 285.8 417 39.8
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 1.0e-74 284.6 419 38.7
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 1.4e-74 284.3 411 39.4
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 1.8e-74 283.9 403 40.0
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 2.3e-74 283.5 398 41.7
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 8.8e-74 281.6 435 37.7
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 8.8e-74 281.6 447 38.9
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 8.8e-74 281.6 459 36.2
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 1.1e-73 281.2 421 36.6
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 1.5e-73 280.8 431 37.4
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 2.0e-73 280.4 420 38.8
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.5e-73 280.0 407 39.3
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 3.3e-73 279.6 410 38.5
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 3.3e-73 279.6 416 39.2
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 3.3e-73 279.6 433 37.9
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 7.4e-73 278.5 404 39.1
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 1.3e-72 277.7 446 37.7
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 1.3e-72 277.7 435 37.7
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 1.7e-72 277.3 397 39.3
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 1.7e-72 277.3 432 39.1
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 2.8e-72 276.6 401 39.7
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 8.2e-72 275.0 433 37.0
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 8.2e-72 275.0 375 40.3
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 2.4e-71 273.5 413 38.7
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 2.4e-71 273.5 413 38.7
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 6.9e-71 271.9 434 38.5
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 9.1e-71 271.6 426 38.0
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.0e-70 270.4 423 39.5
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 5.9e-70 268.9 430 37.9
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 1.7e-69 267.3 425 36.2
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 1.1e-68 264.6 394 39.8
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 1.1e-68 264.6 424 37.7
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 1.9e-68 263.8 418 36.1
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 1.9e-68 263.8 440 35.7
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 7.2e-68 261.9 389 39.6
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 1.2e-67 261.2 393 39.2
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 1.2e-67 261.2 377 40.3
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 1.6e-67 260.8 388 38.9
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 2.1e-67 260.4 375 39.2
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 7.9e-67 258.5 388 38.4
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 1.0e-66 258.1 388 38.7
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 6.7e-66 255.4 371 39.9
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 9.7e-65 251.5 386 37.6
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 5.3e-63 245.7 410 38.5
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 2.0e-62 243.8 426 36.4
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 4.5e-62 242.7 431 34.8
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 1.7e-61 240.7 412 36.7
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 4.2e-60 236.1 401 38.2
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 6.7e-58 228.8 528 30.7
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.7e-53 214.2 199 50.8
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 6.5e-53 212.2 277 42.6
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 1.1e-52 211.5 422 33.4
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 5.2e-50 202.6 196 51.0
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.1e-47 194.9 441 29.5
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 2.0e-46 190.7 180 48.9
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 3.5e-46 189.9 160 51.9
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 6.5e-45 185.7 160 50.6
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 1.5e-44 184.5 164 51.8
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 3.2e-44 183.3 384 32.3
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 1.2e-43 181.4 356 35.1
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 2.3e-42 177.2 344 32.0
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 5.2e-42 176.0 158 49.4
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 1.3e-40 171.4 225 41.8
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 2.8e-40 170.2 315 34.9
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 1.4e-39 167.9 158 48.7
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 1.9e-36 157.5 155 49.0
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 3.3e-36 156.8 303 35.6
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 6.1e-35 152.5 129 59.7
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.0e-34 151.8 130 58.5
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 1.2e-33 148.3 126 56.3
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 2.0e-33 147.5 308 35.1
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 2.0e-33 147.5 473 27.9
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 3.4e-33 146.7 121 51.2
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 4.4e-33 146.4 130 55.4
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 9.8e-33 145.2 136 56.6
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 1.3e-32 144.8 138 53.6
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 4.9e-32 142.9 157 44.6
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 4.9e-32 142.9 157 44.6
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.1e-31 141.7 132 52.3
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 1.1e-31 141.7 138 50.0
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 9.2e-31 138.7 114 49.1
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 3.9e-29 133.3 179 45.3
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 5.0e-29 132.9 136 48.5
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 6.1e-27 125.9 141 36.9
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 8.0e-27 125.6 126 49.2
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 4.0e-26 123.2 127 55.1
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 9.8e-25 118.6 138 51.4
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 9.2e-23 112.1 145 43.4
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 3.5e-22 110.2 146 43.8
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 3.5e-22 110.2 181 29.8
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 3.3e-20 103.6 127 42.5
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 2.8e-19 100.5 72 59.7
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 4.1e-15 86.7 127 32.3
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 9.2e-15 85.5 116 37.9
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 3.5e-14 83.6 70 57.1
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 4.3e-12 76.6 165 33.3
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.1e-10 72.0 125 34.4
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 3.1e-10 70.5 127 36.2
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 8.4e-08 62.4 111 37.8
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 5.4e-07 59.7 125 34.4


User provided reference genes

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